Rh2BG599600

Aspartate-semialdehyde

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0003893
Physical Location & Seq
Reverse (-)
82065682 .. 82066706
1025 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG599600.1

Sequence Viewer

Length: 309 bp
ATGAAATGTGTGCTGTTGTATTGTACCCAAGACAAAGTAACTAACATCAAACTGATCCCTCACTTCCTTATGCCGCCTTGGACGTCAACCATCTCCAAGCGATCTCGGATTATCCTGACCCGCGTTACAATTACACCTTCTGGGAATCTGGGTGTTATTGAGGTGAAAAGCATGGCGGTCAGTACGTATCAGGCTGCTAGTGGAGCTGCTGCTGCTATGATAGAGCTTGAGCAGCAAACTCATGAGGTTCTGGAAGGGAAGCCAGTAACTTCTGAGATATTTCACCGCGGTTTTTCCAAATGGATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00260 ko00261 ko00270 ko00300 ko01100 ko01110 ko01120 ko01130 ko01210 ko01230 map00260 map00261 map00270 map00300 map01100 map01110 map01120 map01130 map01210 map01230
Pfam Domains
Protein Families
Semialdhyde_dh Semialdhyde_dhC

Protein Analysis

102

Amino Acids

11.35

Weight (kDa)

9.34

Isoelectric Point (pI)

41.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 86
AccII CGCG 2 cut(s) 123, 288
AciI CCGC 5 cut(s) 74, 121, 176, 286, 288
AclWI GGATC 1 cut(s) 49
AcyI GRCGYC 1 cut(s) 83
AfaI GTAC 2 cut(s) 25, 184
AluBI AGCT 2 cut(s) 206, 226
AluI AGCT 2 cut(s) 206, 226
AlwI GGATC 1 cut(s) 49
ApeKI GCWGC 5 cut(s) 194, 206, 209, 212, 232
AsuHPI GGTGA 2 cut(s) 175, 275
BbvI GCAGC 5 cut(s) 181, 193, 196, 199, 244
BccI CCATC 1 cut(s) 98
BfaI CTAG 1 cut(s) 198
BisI GCNGC 6 cut(s) 74, 195, 207, 210, 213, 233
BlsI GCNGC 6 cut(s) 75, 196, 208, 211, 214, 234
BpuEI CTTGAG 1 cut(s) 248
BsaAI YACGTR 1 cut(s) 186
BsaHI GRCGYC 1 cut(s) 83
BsaJI CCNNGG 2 cut(s) 77, 286
Bse1I ACTGG 1 cut(s) 263
BseDI CCNNGG 2 cut(s) 77, 286
BseMII CTCAG 1 cut(s) 264
BseNI ACTGG 1 cut(s) 263
BseXI GCAGC 5 cut(s) 181, 193, 196, 199, 244
Bsh1236I CGCG 2 cut(s) 123, 288
Bsp143I GATC 2 cut(s) 54, 101
BspACI CCGC 5 cut(s) 74, 121, 176, 286, 288
BspCNI CTCAG 1 cut(s) 265
BspFNI CGCG 2 cut(s) 123, 288
BspHI TCATGA 1 cut(s) 241
BspPI GGATC 1 cut(s) 49
BsrI ACTGG 1 cut(s) 263
BssECI CCNNGG 2 cut(s) 77, 286
BssMI GATC 2 cut(s) 54, 101
BssNI GRCGYC 1 cut(s) 83
BssT1I CCWWGG 1 cut(s) 77
BstACI GRCGYC 1 cut(s) 83
BstBAI YACGTR 1 cut(s) 186
BstDEI CTNAG 1 cut(s) 273
BstDSI CCRYGG 1 cut(s) 286
BstFNI CGCG 2 cut(s) 123, 288
BstKTI GATC 2 cut(s) 57, 104
BstMBI GATC 2 cut(s) 54, 101
BstMWI GCNNNNNNNGC 3 cut(s) 203, 212, 232
BstSNI TACGTA 1 cut(s) 186
BstUI CGCG 2 cut(s) 123, 288
BstV1I GCAGC 5 cut(s) 181, 193, 196, 199, 244
BtgI CCRYGG 1 cut(s) 286
CciI TCATGA 1 cut(s) 241
Cfr42I CCGCGG 1 cut(s) 289
Csp6I GTAC 2 cut(s) 24, 183
CviAII CATG 2 cut(s) 172, 242
CviJI RGCY 4 cut(s) 194, 206, 226, 262
CviKI_1 RGCY 4 cut(s) 194, 206, 226, 262
CviQI GTAC 2 cut(s) 24, 183
DdeI CTNAG 1 cut(s) 273
DpnI GATC 2 cut(s) 56, 103
DpnII GATC 2 cut(s) 54, 101
Eco105I TACGTA 1 cut(s) 186
Eco130I CCWWGG 1 cut(s) 77
EcoT14I CCWWGG 1 cut(s) 77
ErhI CCWWGG 1 cut(s) 77
FaeI CATG 2 cut(s) 175, 245
FaiI YATR 5 cut(s) 71, 173, 218, 243, 307
FatI CATG 2 cut(s) 171, 241
FauI CCCGC 1 cut(s) 128
Fnu4HI GCNGC 6 cut(s) 74, 195, 207, 210, 213, 233
Fsp4HI GCNGC 6 cut(s) 74, 195, 207, 210, 213, 233
FspBI CTAG 1 cut(s) 198
GluI GCNGC 6 cut(s) 74, 195, 207, 210, 213, 233
Hin1I GRCGYC 1 cut(s) 83
Hin1II CATG 2 cut(s) 175, 245
HincII GTYRAC 1 cut(s) 87
HindII GTYRAC 1 cut(s) 87
HinfI GANTC 1 cut(s) 145
HphI GGTGA 2 cut(s) 175, 275
Hpy166II GTNNAC 1 cut(s) 87
Hpy188I TCNGA 2 cut(s) 108, 274
Hpy188III TCNNGA 3 cut(s) 115, 242, 251
Hpy8I GTNNAC 1 cut(s) 87
HpyAV CCTTC 2 cut(s) 147, 248
HpyCH4IV ACGT 2 cut(s) 83, 185
HpyF10VI GCNNNNNNNGC 3 cut(s) 203, 212, 232
HpyF3I CTNAG 1 cut(s) 273
HpySE526I ACGT 2 cut(s) 83, 185
Hsp92I GRCGYC 1 cut(s) 83
Hsp92II CATG 2 cut(s) 175, 245
KspI CCGCGG 1 cut(s) 289
Kzo9I GATC 2 cut(s) 54, 101
LmnI GCTCC 1 cut(s) 203
LpnPI CCDG 6 cut(s) 126, 128, 134, 176, 236, 276
Lsp1109I GCAGC 5 cut(s) 181, 193, 196, 199, 244
MaeI CTAG 1 cut(s) 198
MaeII ACGT 2 cut(s) 83, 185
MaeIII GTNAC 3 cut(s) 37, 124, 265
MalI GATC 2 cut(s) 56, 103
MboI GATC 2 cut(s) 54, 101
MluCI AATT 1 cut(s) 129
MnlI CCTC 3 cut(s) 69, 154, 238
MspA1I CMGCKG 1 cut(s) 288
MvnI CGCG 2 cut(s) 123, 288
MwoI GCNNNNNNNGC 3 cut(s) 203, 212, 232
NdeII GATC 2 cut(s) 54, 101
NlaIII CATG 2 cut(s) 175, 245
PagI TCATGA 1 cut(s) 241
PfeI GAWTC 1 cut(s) 145
PkrI GCNGC 6 cut(s) 75, 196, 208, 211, 214, 234
Ppu21I YACGTR 1 cut(s) 186
RsaI GTAC 2 cut(s) 25, 184
RsaNI GTAC 2 cut(s) 24, 183
SacII CCGCGG 1 cut(s) 289
SatI GCNGC 6 cut(s) 74, 195, 207, 210, 213, 233
Sau3AI GATC 2 cut(s) 54, 101
SetI ASST 7 cut(s) 86, 139, 165, 188, 208, 228, 249
Sfr303I CCGCGG 1 cut(s) 289
SgrBI CCGCGG 1 cut(s) 289
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
SnaBI TACGTA 1 cut(s) 186
Sse9I AATT 1 cut(s) 129
SsiI CCGC 5 cut(s) 74, 121, 176, 286, 288
SspMI CTAG 1 cut(s) 198
StyI CCWWGG 1 cut(s) 77
TaiI ACGT 2 cut(s) 86, 188
TasI AATT 1 cut(s) 129
TauI GCSGC 1 cut(s) 76
TfiI GAWTC 1 cut(s) 145
TseI GCWGC 5 cut(s) 194, 206, 209, 212, 232
TspDTI ATGAA 1 cut(s) 17
XspI CTAG 1 cut(s) 198
ZraI GACGTC 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.