Rh2AG587600

Aspartate-semialdehyde

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0003893
Physical Location & Seq
Reverse (-)
81939718 .. 81941109
1392 bp
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UTR
Exon/CDS
Intron
Rh2AG587600.1

Sequence Viewer

Length: 264 bp
ATGGAACGACAAGGATGTCAAGGAACTGTCACTTGCATGCGAGTTCCTGTAATACGGGCACATGCTGAGAGTGTAAATTGTGAATTTGAGAATCTCCTTGATGAGGACACCGCAAGGGATATTCGGAAGAAGGCTCCTGGTGTGGAGGTTATTGATGACCATGCAGCTAATAACTTCCCTACACCATTGGAGGTGTCAAACAAAGATGATGTTGCAGTTGGCAGAATCAGCCGTGATGTGTCCCAGGAGGGGAACTATGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00260 ko00261 ko00270 ko00300 ko01100 ko01110 ko01120 ko01130 ko01210 ko01230 map00260 map00261 map00270 map00300 map01100 map01110 map01120 map01130 map01210 map01230
Pfam Domains
Protein Families
Semialdhyde_dh Semialdhyde_dhC

Protein Analysis

87

Amino Acids

9.59

Weight (kDa)

4.74

Isoelectric Point (pI)

27.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Semialdhyde_dhC PF02774 9 - 82 2.9e-15 Semialdehyde dehydrogenase, dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 15
AciI CCGC 1 cut(s) 111
AcsI RAATTY 1 cut(s) 83
AfiI CCNNNNNNNGG 2 cut(s) 103, 249
AjnI CCWGG 2 cut(s) 136, 243
AluBI AGCT 1 cut(s) 167
AluI AGCT 1 cut(s) 167
ApeKI GCWGC 1 cut(s) 164
ApoI RAATTY 1 cut(s) 83
BaeGI GKGCMC 1 cut(s) 61
BbvI GCAGC 1 cut(s) 176
BceAI ACGGC 1 cut(s) 216
BciT130I CCWGG 2 cut(s) 138, 245
BisI GCNGC 1 cut(s) 165
BlsI GCNGC 1 cut(s) 166
Bme1390I CCNGG 2 cut(s) 138, 245
BmiI GGNNCC 1 cut(s) 135
BmrFI CCNGG 2 cut(s) 138, 245
BsaJI CCNNGG 1 cut(s) 243
Bsc4I CCNNNNNNNGG 2 cut(s) 103, 249
BseBI CCWGG 2 cut(s) 138, 245
BseDI CCNNGG 1 cut(s) 243
BseGI GGATG 1 cut(s) 20
BseLI CCNNNNNNNGG 2 cut(s) 103, 249
BseMII CTCAG 1 cut(s) 57
BseSI GKGCMC 1 cut(s) 61
BseXI GCAGC 1 cut(s) 176
BslFI GGGAC 1 cut(s) 226
BslI CCNNNNNNNGG 2 cut(s) 103, 249
BsmFI GGGAC 1 cut(s) 226
Bsp1286I GDGCHC 1 cut(s) 61
BspACI CCGC 1 cut(s) 111
BspCNI CTCAG 1 cut(s) 58
BspLI GGNNCC 1 cut(s) 135
BssECI CCNNGG 1 cut(s) 243
Bst2UI CCWGG 2 cut(s) 138, 245
Bst4CI ACNGT 1 cut(s) 28
BstC8I GCNNGC 1 cut(s) 38
BstDEI CTNAG 1 cut(s) 66
BstENI CCTNNNNNAGG 1 cut(s) 101
BstF5I GGATG 1 cut(s) 20
BstMWI GCNNNNNNNGC 1 cut(s) 228
BstNI CCWGG 2 cut(s) 138, 245
BstNSI RCATGY 2 cut(s) 40, 65
BstSCI CCNGG 2 cut(s) 136, 243
BstSLI GKGCMC 1 cut(s) 61
BstV1I GCAGC 1 cut(s) 176
BtsCI GGATG 1 cut(s) 20
Cac8I GCNNGC 1 cut(s) 38
CviAII CATG 3 cut(s) 37, 62, 161
CviJI RGCY 3 cut(s) 134, 167, 231
CviKI_1 RGCY 3 cut(s) 134, 167, 231
DdeI CTNAG 1 cut(s) 66
DrdI GACNNNNNNGTC 1 cut(s) 15
DseDI GACNNNNNNGTC 1 cut(s) 15
EcoNI CCTNNNNNAGG 1 cut(s) 101
EcoRII CCWGG 2 cut(s) 136, 243
FaeI CATG 3 cut(s) 40, 65, 164
FaiI YATR 4 cut(s) 38, 63, 162, 258
FaqI GGGAC 1 cut(s) 226
FatI CATG 3 cut(s) 36, 61, 160
Fnu4HI GCNGC 1 cut(s) 165
FokI GGATG 1 cut(s) 27
Fsp4HI GCNGC 1 cut(s) 165
GluI GCNGC 1 cut(s) 165
Hin1II CATG 3 cut(s) 40, 65, 164
HinfI GANTC 2 cut(s) 91, 225
Hpy188I TCNGA 1 cut(s) 126
HpyAV CCTTC 1 cut(s) 124
HpyCH4III ACNGT 1 cut(s) 28
HpyCH4V TGCA 3 cut(s) 36, 164, 215
HpyF10VI GCNNNNNNNGC 1 cut(s) 228
HpyF3I CTNAG 1 cut(s) 66
Hsp92II CATG 3 cut(s) 40, 65, 164
LmnI GCTCC 1 cut(s) 139
LpnPI CCDG 5 cut(s) 60, 123, 150, 230, 257
Lsp1109I GCAGC 1 cut(s) 176
MaeIII GTNAC 1 cut(s) 28
MboII GAAGA 1 cut(s) 139
MhlI GDGCHC 1 cut(s) 61
MluCI AATT 2 cut(s) 76, 83
MnlI CCTC 4 cut(s) 97, 139, 184, 241
MslI CAYNNNNRTG 1 cut(s) 35
MspR9I CCNGG 2 cut(s) 138, 245
MvaI CCWGG 2 cut(s) 138, 245
MwoI GCNNNNNNNGC 1 cut(s) 228
NlaIII CATG 3 cut(s) 40, 65, 164
NlaIV GGNNCC 1 cut(s) 135
NmuCI GTSAC 1 cut(s) 28
NspI RCATGY 2 cut(s) 40, 65
PaeI GCATGC 1 cut(s) 40
PfeI GAWTC 2 cut(s) 91, 225
PkrI GCNGC 1 cut(s) 166
Psp6I CCWGG 2 cut(s) 136, 243
PspGI CCWGG 2 cut(s) 136, 243
PspN4I GGNNCC 1 cut(s) 135
RseI CAYNNNNRTG 1 cut(s) 35
SatI GCNGC 1 cut(s) 165
ScrFI CCNGG 2 cut(s) 138, 245
SduI GDGCHC 1 cut(s) 61
SetI ASST 3 cut(s) 150, 169, 195
SmiMI CAYNNNNRTG 1 cut(s) 35
SphI GCATGC 1 cut(s) 40
Sse9I AATT 2 cut(s) 76, 83
SsiI CCGC 1 cut(s) 111
StyD4I CCNGG 2 cut(s) 136, 243
TaaI ACNGT 1 cut(s) 28
TasI AATT 2 cut(s) 76, 83
TfiI GAWTC 2 cut(s) 91, 225
TseFI GTSAC 1 cut(s) 28
TseI GCWGC 1 cut(s) 164
Tsp45I GTSAC 1 cut(s) 28
XagI CCTNNNNNAGG 1 cut(s) 101
XapI RAATTY 1 cut(s) 83
XceI RCATGY 2 cut(s) 40, 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.