Rh2BG599500

Aspartate-semialdehyde

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0003893
Physical Location & Seq
Reverse (-)
82064087 .. 82065437
1351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG599500.1

Sequence Viewer

Length: 306 bp
ATGCGAGTTCCTGTAATACGGGCACATGCTGAGAGTGTAAATTGTGAATTTGAGAATCTCATTGATGAGGACACCACAAGGTATATTCGGAAGAAGGCTCCTGGTGTGGCGGTTATTGATGTCCATGCAGCTAATAACTTCCCTACACCTTTGGAGGTGTCAAACAAAGATGATGTTGCAGTTGGCAGAATCAGCCATGATGTGTCCCAGGAGGGGAACTATGGGTTGGACATCTTTGTCTGCGGTGATCAAAAACGCAAGGGAGCTGCACTTAATGCTGTTCAGATTGCTGAGCTGTTGCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00260 ko00261 ko00270 ko00300 ko01100 ko01110 ko01120 ko01130 ko01210 ko01230 map00260 map00261 map00270 map00300 map01100 map01110 map01120 map01130 map01210 map01230
Pfam Domains
Protein Families
Semialdhyde_dh Semialdhyde_dhC

Protein Analysis

101

Amino Acids

11.06

Weight (kDa)

5.24

Isoelectric Point (pI)

20.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Semialdhyde_dhC PF02774 2 - 86 4.7e-13 Semialdehyde dehydrogenase, dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 236
AciI CCGC 2 cut(s) 110, 243
AcsI RAATTY 1 cut(s) 47
AfiI CCNNNNNNNGG 1 cut(s) 213
AjnI CCWGG 2 cut(s) 100, 207
AjuI GAANNNNNNNTTGG 2 cut(s) 209, 241
AluBI AGCT 3 cut(s) 131, 266, 295
AluI AGCT 3 cut(s) 131, 266, 295
ApeKI GCWGC 2 cut(s) 128, 266
ApoI RAATTY 1 cut(s) 47
AsuHPI GGTGA 1 cut(s) 257
BaeGI GKGCMC 1 cut(s) 25
BbvI GCAGC 2 cut(s) 140, 253
BciT130I CCWGG 2 cut(s) 102, 209
BclI TGATCA 1 cut(s) 247
BfmI CTRYAG 1 cut(s) 302
BisI GCNGC 2 cut(s) 129, 267
BlpI GCTNAGC 1 cut(s) 291
BlsI GCNGC 2 cut(s) 130, 268
Bme1390I CCNGG 2 cut(s) 102, 209
BmiI GGNNCC 1 cut(s) 99
BmrFI CCNGG 2 cut(s) 102, 209
Bpu1102I GCTNAGC 1 cut(s) 291
BsaJI CCNNGG 1 cut(s) 207
Bsc4I CCNNNNNNNGG 1 cut(s) 213
BseBI CCWGG 2 cut(s) 102, 209
BseDI CCNNGG 1 cut(s) 207
BseLI CCNNNNNNNGG 1 cut(s) 213
BseMII CTCAG 2 cut(s) 21, 282
BseSI GKGCMC 1 cut(s) 25
BseXI GCAGC 2 cut(s) 140, 253
BsgI GTGCAG 1 cut(s) 252
BslFI GGGAC 1 cut(s) 190
BslI CCNNNNNNNGG 1 cut(s) 213
BsmFI GGGAC 1 cut(s) 190
Bsp1286I GDGCHC 1 cut(s) 25
Bsp143I GATC 1 cut(s) 247
Bsp1720I GCTNAGC 1 cut(s) 291
BspACI CCGC 2 cut(s) 110, 243
BspCNI CTCAG 2 cut(s) 22, 283
BspLI GGNNCC 1 cut(s) 99
BssECI CCNNGG 1 cut(s) 207
BssMI GATC 1 cut(s) 247
Bst2UI CCWGG 2 cut(s) 102, 209
BstAPI GCANNNNNTGC 1 cut(s) 275
BstDEI CTNAG 2 cut(s) 30, 291
BstKTI GATC 1 cut(s) 250
BstMBI GATC 1 cut(s) 247
BstMWI GCNNNNNNNGC 2 cut(s) 192, 275
BstNI CCWGG 2 cut(s) 102, 209
BstNSI RCATGY 1 cut(s) 29
BstSCI CCNGG 2 cut(s) 100, 207
BstSFI CTRYAG 1 cut(s) 302
BstSLI GKGCMC 1 cut(s) 25
BstV1I GCAGC 2 cut(s) 140, 253
CviAII CATG 3 cut(s) 26, 125, 197
CviJI RGCY 5 cut(s) 98, 131, 195, 266, 295
CviKI_1 RGCY 5 cut(s) 98, 131, 195, 266, 295
DdeI CTNAG 2 cut(s) 30, 291
DpnI GATC 1 cut(s) 249
DpnII GATC 1 cut(s) 247
DrdI GACNNNNNNGTC 1 cut(s) 236
DseDI GACNNNNNNGTC 1 cut(s) 236
EcoRII CCWGG 2 cut(s) 100, 207
FaeI CATG 3 cut(s) 29, 128, 200
FaiI YATR 6 cut(s) 27, 84, 126, 198, 222, 304
FaqI GGGAC 1 cut(s) 190
FatI CATG 3 cut(s) 25, 124, 196
FbaI TGATCA 1 cut(s) 247
Fnu4HI GCNGC 2 cut(s) 129, 267
Fsp4HI GCNGC 2 cut(s) 129, 267
GluI GCNGC 2 cut(s) 129, 267
Hin1II CATG 3 cut(s) 29, 128, 200
HinfI GANTC 2 cut(s) 55, 189
HphI GGTGA 1 cut(s) 257
Hpy188I TCNGA 2 cut(s) 90, 285
HpyAV CCTTC 1 cut(s) 88
HpyCH4V TGCA 3 cut(s) 128, 179, 269
HpyF10VI GCNNNNNNNGC 2 cut(s) 192, 275
HpyF3I CTNAG 2 cut(s) 30, 291
Hsp92II CATG 3 cut(s) 29, 128, 200
Ksp22I TGATCA 1 cut(s) 247
Kzo9I GATC 1 cut(s) 247
LmnI GCTCC 2 cut(s) 103, 263
LpnPI CCDG 5 cut(s) 24, 87, 114, 194, 221
Lsp1109I GCAGC 2 cut(s) 140, 253
MalI GATC 1 cut(s) 249
MboI GATC 1 cut(s) 247
MboII GAAGA 1 cut(s) 103
MhlI GDGCHC 1 cut(s) 25
MluCI AATT 2 cut(s) 40, 47
MmeI TCCRAC 1 cut(s) 207
MnlI CCTC 3 cut(s) 61, 148, 205
MseI TTAA 1 cut(s) 273
MspR9I CCNGG 2 cut(s) 102, 209
MvaI CCWGG 2 cut(s) 102, 209
MwoI GCNNNNNNNGC 2 cut(s) 192, 275
NdeII GATC 1 cut(s) 247
NlaIII CATG 3 cut(s) 29, 128, 200
NlaIV GGNNCC 1 cut(s) 99
NspI RCATGY 1 cut(s) 29
PfeI GAWTC 2 cut(s) 55, 189
PkrI GCNGC 2 cut(s) 130, 268
Psp6I CCWGG 2 cut(s) 100, 207
PspGI CCWGG 2 cut(s) 100, 207
PspN4I GGNNCC 1 cut(s) 99
SaqAI TTAA 1 cut(s) 273
SatI GCNGC 2 cut(s) 129, 267
Sau3AI GATC 1 cut(s) 247
ScrFI CCNGG 2 cut(s) 102, 209
SduI GDGCHC 1 cut(s) 25
SetI ASST 6 cut(s) 83, 133, 151, 159, 268, 297
SfcI CTRYAG 1 cut(s) 302
Sse9I AATT 2 cut(s) 40, 47
SsiI CCGC 2 cut(s) 110, 243
StyD4I CCNGG 2 cut(s) 100, 207
TasI AATT 2 cut(s) 40, 47
TfiI GAWTC 2 cut(s) 55, 189
Tru1I TTAA 1 cut(s) 273
Tru9I TTAA 1 cut(s) 273
TseI GCWGC 2 cut(s) 128, 266
XapI RAATTY 1 cut(s) 47
XceI RCATGY 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.