Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008590

Physical Location & Seq

Genomic Coordinates Forward (+)

5226982 .. 5228202

Gene Structure 1221 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G15190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGCGAAAATCTCGAGCGCTTCTTGTTTCAGAGCCATCTTTCTCGGAGCTCTCATCATCCTCTGTCTCCCTCATCCCTCCACCGGCGTTCCTTTGGAAGAGTTAGAAAGAGCCATCGCCATCCTCCGCGTCAGAGGTCGTGCTCTCTTCGCCAATGCCATCATCACCTCCGATCTTCTCTTCGATCTACTCTCCGACGAGTCTCTCACTCTCTTCGCCCCCACCGATTCCATGCTCTTCGATCTCGACATGACTCATTCTCTTCCGTTCTACGTTTCTACTCTCCGCCTCCACTCGGTACCTCTCCGACTCTCACTTTCTGGTCTCCGATCTCTCCCCAACTCCTCCTCTCTCCCGACGCTTCTCCCATCTCATCGCCTCCTTCTCACTAAGCATTCTTCCTCCAACGATTCCATTTTTCTCGACGGCGTTCAACTTCTCATCCCTGGTTTGTTCGATGGTCAACATATTGCCGTACACGGTCTCGCCGATCTTCTTCCCCTCACTGCTCCTTCATCCCCCAATCGTCTCGTGGAAGATTCGACGGCACTGGCAAAGTCACCATGGTTTTTAGGTTCAAGATTTTCACCGGCACCAGAGCCTTACTTCGCCTTTATGGATCTTTCACCAGCAGAATCGCCGAGTGTTGAGGAAGTTTCACCATCGCCGTCGTGGGGAGAAGGAGAAGAAGATTTCATCGTAGGCGATGAAGGAGGTCCGTTAGATGGGAGGAATAACGGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

248

Amino Acids

26.74

Weight (kDa)

4.79

Isoelectric Point (pI)

63.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008590)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15190
fragaria_vesca	FvH4_2g02380 FvH4_2g02450 FvH4_2g04910 FvH4_3g08610 FvH4_4g13350 FvH4_4g36540 FvH4_4g36551 FvH4_5g29740
malus_domestica	MD15G1420000.v1.1
prunus_persica	Prupe.1G566000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0223241 RchiOBHm_Chr7g0223251
rosa_laevigata	RLG00000001997
rosa_multiflora	Rmu_co8206110.1_g000001 Rmu_sc0002192.1_g000007 Rmu_sc0009034.1_g000005
rosa_roxburghii	Rroxscaffold_3G00236010
rosa_rugosa	Rorug07G0213800
rosa_samantha	Rh1AG061200 Rh2CG525600 Rh7DG354200
rosa_wichuraiana	Rw7G030520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	298
AccB1I	GGYRCC	2 cut(s)	298, 592
AccII	CGCG	1 cut(s)	129
AciI	CCGC	2 cut(s)	127, 286
AclWI	GGATC	1 cut(s)	627
AfaI	GTAC	2 cut(s)	300, 477
AfeI	AGCGCT	1 cut(s)	19
AfiI	CCNNNNNNNGG	4 cut(s)	83, 295, 674, 725
AgsI	TTSAA	2 cut(s)	434, 579
AjnI	CCWGG	1 cut(s)	445
AluBI	AGCT	1 cut(s)	50
AluI	AGCT	1 cut(s)	50
Alw21I	GWGCWC	2 cut(s)	52, 145
Alw26I	GTCTC	5 cut(s)	71, 207, 329, 488, 533
AlwI	GGATC	1 cut(s)	627
Ama87I	CYCGRG	1 cut(s)	13
Aor51HI	AGCGCT	1 cut(s)	19
Asp718I	GGTACC	1 cut(s)	298
AspLEI	GCGC	1 cut(s)	20
AspS9I	GGNCC	1 cut(s)	716
AsuHPI	GGTGA	5 cut(s)	157, 552, 579, 618, 651
AvaI	CYCGRG	1 cut(s)	13
AvaII	GGWCC	1 cut(s)	716
BanI	GGYRCC	2 cut(s)	298, 592
BanII	GRGCYC	1 cut(s)	52
BauI	CACGAG	1 cut(s)	530
Bbv12I	GWGCWC	2 cut(s)	52, 145
BccI	CCATC	8 cut(s)	44, 122, 128, 167, 376, 452, 670, 719
BceAI	ACGGC	4 cut(s)	442, 458, 561, 652
BciT130I	CCWGG	1 cut(s)	447
BcoDI	GTCTC	5 cut(s)	71, 207, 329, 488, 533
BfoI	RGCGCY	1 cut(s)	21
Bme1390I	CCNGG	1 cut(s)	447
Bme18I	GGWCC	1 cut(s)	716
BmeT110I	CYCGRG	1 cut(s)	13
BmgT120I	GGNCC	1 cut(s)	716
BmiI	GGNNCC	2 cut(s)	300, 594
BmrFI	CCNGG	1 cut(s)	447
BsaI	GGTCTC	2 cut(s)	329, 488
BsaJI	CCNNGG	2 cut(s)	445, 563
Bsc4I	CCNNNNNNNGG	4 cut(s)	83, 295, 674, 725
Bse118I	RCCGGY	2 cut(s)	83, 589
Bse1I	ACTGG	1 cut(s)	555
BseBI	CCWGG	1 cut(s)	447
BseDI	CCNNGG	2 cut(s)	445, 563
BseGI	GGATG	5 cut(s)	57, 73, 120, 441, 515
BseLI	CCNNNNNNNGG	4 cut(s)	83, 295, 674, 725
BseNI	ACTGG	1 cut(s)	555
BseRI	GAGGAG	2 cut(s)	334, 337
Bsh1236I	CGCG	1 cut(s)	129
BshNI	GGYRCC	2 cut(s)	298, 592
BsiHKAI	GWGCWC	2 cut(s)	52, 145
BsiHKCI	CYCGRG	1 cut(s)	13
BsiSI	CCGG	2 cut(s)	84, 590
BslI	CCNNNNNNNGG	4 cut(s)	83, 295, 674, 725
BsmAI	GTCTC	5 cut(s)	71, 207, 329, 488, 533
BsmBI	CGTCTC	1 cut(s)	533
BsmI	GAATGC	1 cut(s)	394
Bso31I	GGTCTC	2 cut(s)	329, 488
BsoBI	CYCGRG	1 cut(s)	13
Bsp1286I	GDGCHC	2 cut(s)	52, 145
Bsp143I	GATC	6 cut(s)	172, 184, 241, 329, 490, 619
Bsp19I	CCATGG	1 cut(s)	563
BspACI	CCGC	2 cut(s)	127, 286
BspFNI	CGCG	1 cut(s)	129
BspLI	GGNNCC	2 cut(s)	300, 594
BspPI	GGATC	1 cut(s)	627
BspQI	GCTCTTC	1 cut(s)	242
BspT107I	GGYRCC	2 cut(s)	298, 592
BspTNI	GGTCTC	2 cut(s)	329, 488
BsrFI	RCCGGY	2 cut(s)	83, 589
BsrI	ACTGG	1 cut(s)	555
BssAI	RCCGGY	2 cut(s)	83, 589
BssECI	CCNNGG	2 cut(s)	445, 563
BssMI	GATC	6 cut(s)	172, 184, 241, 329, 490, 619
BssSI	CACGAG	1 cut(s)	530
BssT1I	CCWWGG	1 cut(s)	563
Bst2BI	CACGAG	1 cut(s)	530
Bst2UI	CCWGG	1 cut(s)	447
Bst4CI	ACNGT	1 cut(s)	482
Bst6I	CTCTTC	6 cut(s)	93, 152, 185, 218, 242, 267
BstDEI	CTNAG	1 cut(s)	390
BstDSI	CCRYGG	1 cut(s)	563
BstF5I	GGATG	5 cut(s)	57, 73, 120, 441, 515
BstFNI	CGCG	1 cut(s)	129
BstH2I	RGCGCY	1 cut(s)	21
BstHHI	GCGC	1 cut(s)	20
BstKTI	GATC	6 cut(s)	175, 187, 244, 332, 493, 622
BstMAI	GTCTC	5 cut(s)	71, 207, 329, 488, 533
BstMBI	GATC	6 cut(s)	172, 184, 241, 329, 490, 619
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstNI	CCWGG	1 cut(s)	447
BstSCI	CCNGG	1 cut(s)	445
BstUI	CGCG	1 cut(s)	129
BstX2I	RGATCY	1 cut(s)	619
BstYI	RGATCY	1 cut(s)	619
BtgI	CCRYGG	1 cut(s)	563
BtgZI	GCGATG	4 cut(s)	100, 359, 648, 720
BtsCI	GGATG	5 cut(s)	57, 73, 120, 441, 515
BtsI	GCAGTG	1 cut(s)	504
BtsIMutI	CAGTG	2 cut(s)	504, 548
CfoI	GCGC	1 cut(s)	20
Cfr10I	RCCGGY	2 cut(s)	83, 589
Cfr13I	GGNCC	1 cut(s)	716
CseI	GACGC	2 cut(s)	118, 367
Csp6I	GTAC	2 cut(s)	299, 476
CviAII	CATG	3 cut(s)	232, 250, 564
CviJI	RGCY	5 cut(s)	35, 50, 113, 601, 741
CviKI_1	RGCY	5 cut(s)	35, 50, 113, 601, 741
CviQI	GTAC	2 cut(s)	299, 476
DdeI	CTNAG	1 cut(s)	390
DpnI	GATC	6 cut(s)	174, 186, 243, 331, 492, 621
DpnII	GATC	6 cut(s)	172, 184, 241, 329, 490, 619
Eam1104I	CTCTTC	6 cut(s)	93, 152, 185, 218, 242, 267
EarI	CTCTTC	6 cut(s)	93, 152, 185, 218, 242, 267
EciI	GGCGGA	1 cut(s)	275
Ecl136II	GAGCTC	1 cut(s)	50
Eco130I	CCWWGG	1 cut(s)	563
Eco24I	GRGCYC	1 cut(s)	52
Eco31I	GGTCTC	2 cut(s)	329, 488
Eco47I	GGWCC	1 cut(s)	716
Eco47III	AGCGCT	1 cut(s)	19
Eco53kI	GAGCTC	1 cut(s)	50
Eco88I	CYCGRG	1 cut(s)	13
EcoICRI	GAGCTC	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	445
EcoT14I	CCWWGG	1 cut(s)	563
EcoT38I	GRGCYC	1 cut(s)	52
ErhI	CCWWGG	1 cut(s)	563
Esp3I	CGTCTC	1 cut(s)	533
FaeI	CATG	3 cut(s)	235, 253, 567
FaiI	YATR	5 cut(s)	233, 251, 468, 565, 617
FatI	CATG	3 cut(s)	231, 249, 563
FokI	GGATG	5 cut(s)	44, 60, 107, 428, 502
FriOI	GRGCYC	1 cut(s)	52
GlaI	GCGC	1 cut(s)	19
HaeII	RGCGCY	1 cut(s)	21
HapII	CCGG	2 cut(s)	84, 590
HgaI	GACGC	2 cut(s)	118, 367
HhaI	GCGC	1 cut(s)	20
Hin1II	CATG	3 cut(s)	235, 253, 567
Hin6I	GCGC	1 cut(s)	18
HinP1I	GCGC	1 cut(s)	18
HincII	GTYRAC	1 cut(s)	464
HindII	GTYRAC	1 cut(s)	464
HinfI	GANTC	7 cut(s)	200, 227, 253, 309, 410, 539, 635
HpaII	CCGG	2 cut(s)	84, 590
HphI	GGTGA	5 cut(s)	157, 552, 579, 618, 651
Hpy166II	GTNNAC	2 cut(s)	464, 478
Hpy188I	TCNGA	7 cut(s)	32, 47, 134, 172, 196, 308, 329
Hpy188III	TCNNGA	5 cut(s)	13, 245, 355, 422, 579
Hpy8I	GTNNAC	2 cut(s)	464, 478
Hpy99I	CGWCG	5 cut(s)	200, 361, 428, 547, 673
HpyAV	CCTTC	4 cut(s)	392, 522, 674, 704
HpyCH4III	ACNGT	1 cut(s)	482
HpyCH4IV	ACGT	1 cut(s)	273
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
HpyF3I	CTNAG	1 cut(s)	390
HpySE526I	ACGT	1 cut(s)	273
Hsp92II	CATG	3 cut(s)	235, 253, 567
HspAI	GCGC	1 cut(s)	18
KpnI	GGTACC	1 cut(s)	302
Kzo9I	GATC	6 cut(s)	172, 184, 241, 329, 490, 619
LguI	GCTCTTC	1 cut(s)	242
LmnI	GCTCC	2 cut(s)	47, 514
LpnPI	CCDG	8 cut(s)	97, 306, 432, 459, 536, 603, 609, 642
MaeII	ACGT	1 cut(s)	273
MaeIII	GTNAC	1 cut(s)	558
MalI	GATC	6 cut(s)	174, 186, 243, 331, 492, 621
MboI	GATC	6 cut(s)	172, 184, 241, 329, 490, 619
MflI	RGATCY	1 cut(s)	619
MhlI	GDGCHC	2 cut(s)	52, 145
MlyI	GAGTC	3 cut(s)	209, 247, 303
MmeI	TCCRAC	3 cut(s)	219, 331, 429
MspI	CCGG	2 cut(s)	84, 590
MspR9I	CCNGG	1 cut(s)	447
Mva1269I	GAATGC	1 cut(s)	394
MvaI	CCWGG	1 cut(s)	447
MvnI	CGCG	1 cut(s)	129
MwoI	GCNNNNNNNGC	1 cut(s)	149
NcoI	CCATGG	1 cut(s)	563
NdeII	GATC	6 cut(s)	172, 184, 241, 329, 490, 619
NlaIII	CATG	3 cut(s)	235, 253, 567
NlaIV	GGNNCC	2 cut(s)	300, 594
NmeAIII	GCCGAG	1 cut(s)	666
NmuCI	GTSAC	1 cut(s)	558
PaeR7I	CTCGAG	1 cut(s)	13
PciSI	GCTCTTC	1 cut(s)	242
PcsI	WCGNNNNNNNCGW	2 cut(s)	222, 486
PctI	GAATGC	1 cut(s)	394
PfeI	GAWTC	4 cut(s)	227, 410, 539, 635
PleI	GAGTC	3 cut(s)	208, 247, 303
PpsI	GAGTC	3 cut(s)	208, 247, 303
Psp124BI	GAGCTC	1 cut(s)	52
Psp6I	CCWGG	1 cut(s)	445
PspGI	CCWGG	1 cut(s)	445
PspN4I	GGNNCC	2 cut(s)	300, 594
PspPI	GGNCC	1 cut(s)	716
PsuI	RGATCY	1 cut(s)	619
RsaI	GTAC	2 cut(s)	300, 477
RsaNI	GTAC	2 cut(s)	299, 476
SacI	GAGCTC	1 cut(s)	52
SapI	GCTCTTC	1 cut(s)	242
Sau3AI	GATC	6 cut(s)	172, 184, 241, 329, 490, 619
Sau96I	GGNCC	1 cut(s)	716
SchI	GAGTC	3 cut(s)	209, 247, 303
ScrFI	CCNGG	1 cut(s)	447
SduI	GDGCHC	2 cut(s)	52, 145
SetI	ASST	7 cut(s)	52, 139, 170, 276, 304, 577, 718
Sfr274I	CTCGAG	1 cut(s)	13
SgrAI	CRCCGGYG	1 cut(s)	83
SinI	GGWCC	1 cut(s)	716
SlaI	CTCGAG	1 cut(s)	13
SmlI	CTYRAG	1 cut(s)	13
SmoI	CTYRAG	1 cut(s)	13
SsiI	CCGC	2 cut(s)	127, 286
SstI	GAGCTC	1 cut(s)	52
StyD4I	CCNGG	1 cut(s)	445
StyI	CCWWGG	1 cut(s)	563
TaaI	ACNGT	1 cut(s)	482
TaiI	ACGT	1 cut(s)	276
TaqI	TCGA	7 cut(s)	14, 183, 240, 246, 423, 456, 542
TfiI	GAWTC	4 cut(s)	227, 410, 539, 635
TscAI	CASTG	2 cut(s)	511, 555
TseFI	GTSAC	1 cut(s)	558
Tsp45I	GTSAC	1 cut(s)	558
TspDTI	ATGAA	3 cut(s)	504, 685, 723
TspGWI	ACGGA	2 cut(s)	255, 708
TspRI	CASTG	2 cut(s)	511, 555
VpaK11BI	GGWCC	1 cut(s)	716
XcmI	CCANNNNNNNNNTGG	2 cut(s)	529, 669
XhoI	CTCGAG	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.