FvH4_5g29740

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0008590
Physical Location & Seq
Forward (+)
20662364 .. 20663958
1595 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g29740.t1

Sequence Viewer

Length: 1035 bp
ATGGCGGCGTTCACCGTCCGATCACTCTCGCCGGTTCCGATACTCCTCCTCCTCCTCGCCGTCGCCGTCTTCCTCACGTTCCCGACGTGCGCGGCGTCGATCTCCTCCCGCGAGTACGAGTCGATGCAGCGCGTGCTTCGCAACCACGGCTACAATCTCATCTGCAACGCCATGGCCACCTCTGACCTCCAGTACGAGATCCTCACGCTTCCTCCCAACGCCTCCTTCACCATCTTCGCTCCCACGGACGCCTCCCTCTTCGCCCTCGACATGATCCAAACGGCGTCGTCCTACACCGAAACGCTCCGCCTCCACTTCGTCCCTCTCCGTCTCTCCCTCTCCGACCTCCGATCCATCTCCTCCGGCTCCATCCTCCCCACTCTCCTCCCCTACTCCGCCCTCCGCCTCACCACCGATCCCCTCCAAGTCGCCGGAGTCGACGTCGCCTTGCCCGGCCTTTTCTACTCTCGCCGCGTCGCCGTCCACGGCCTCGCCGGAATAGTCAGCCTCAGCTCTGTCGTTTCCTACGGTTCTCATTTCCAGGCCACTGCTCCCGTCGCAAGCGGCGGCGCCGACACGGTCGCGCCCTTGAAAACTGTCTCCAACCGCTCAGATCTCTCTCCGGCGGCCTCACCACCGTCCGTAGCTGCGGCGCCGTCGTCTAATCATTCCAAGACTGCCGGCGTGGATCTTTCTCCGGCGAGAGCAGAGTCGCCGGTGAGCACTGCTGGACCTCCATCTCCGACTCCGAGAGAAAACATCTCGCCGGCTTCGGATCAGAGTCCCTCGGCATCTCCACCGTCGGCCAATTCAGTGCCGGAGAGAGCTAGGGTTTTGCTGATGGAGACTACGGAGGGCAATTCGGACTCCGACGTCGGTGATGAAATCTCTGAGGGGGTGGAAGCGGAAGCGGTTGGGAAGGTGAAGAAATGTGGAGCGTCGGATGAGATGACCATTGACTGCTTTGTGGCTGATGAAGACGGGGATGGACTAGAACAGCTCAGCCTTCAGCGTCTGGTTCGAGCCTTGGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

345

Amino Acids

35.89

Weight (kDa)

4.83

Isoelectric Point (pI)

57.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 872
AatII GACGTC 2 cut(s) 444, 876
AccB1I GGYRCC 2 cut(s) 569, 652
AccBSI CCGCTC 1 cut(s) 609
AccI GTMKAC 1 cut(s) 438
AccII CGCG 5 cut(s) 92, 111, 132, 474, 584
AclWI GGATC 6 cut(s) 193, 268, 345, 410, 696, 783
AcoI YGGCCR 2 cut(s) 174, 804
AcuI CTGAAG 1 cut(s) 992
AcyI GRCGYC 7 cut(s) 95, 249, 284, 441, 570, 653, 873
AfaI GTAC 2 cut(s) 116, 194
AgsI TTSAA 1 cut(s) 592
AjiI CACGTC 1 cut(s) 87
AjnI CCWGG 1 cut(s) 540
AjuI GAANNNNNNNTTGG 2 cut(s) 209, 241
AluBI AGCT 4 cut(s) 513, 647, 827, 1000
AluI AGCT 4 cut(s) 513, 647, 827, 1000
Alw21I GWGCWC 1 cut(s) 725
Alw26I GTCTC 3 cut(s) 335, 604, 839
AlwI GGATC 6 cut(s) 193, 268, 345, 410, 696, 783
AlwNI CAGNNNCTG 1 cut(s) 1015
AoxI GGCC 7 cut(s) 174, 454, 487, 543, 627, 804, 1029
ApeKI GCWGC 2 cut(s) 127, 647
AspLEI GCGC 5 cut(s) 92, 132, 572, 586, 655
AspS9I GGNCC 1 cut(s) 731
AsuC2I CCSGG 1 cut(s) 453
AsuHPI GGTGA 7 cut(s) 4, 220, 400, 624, 730, 890, 934
AvaII GGWCC 1 cut(s) 731
BalI TGGCCA 1 cut(s) 176
BanI GGYRCC 2 cut(s) 569, 652
BbsI GAAGAC 2 cut(s) 61, 984
Bbv12I GWGCWC 1 cut(s) 725
BbvCI CCTCAGC 1 cut(s) 509
BbvI GCAGC 2 cut(s) 139, 634
BccI CCATC 6 cut(s) 239, 362, 377, 745, 835, 980
BceAI ACGGC 7 cut(s) 44, 50, 163, 297, 464, 502, 640
BciT130I CCWGG 1 cut(s) 542
BcnI CCSGG 1 cut(s) 453
BcoDI GTCTC 3 cut(s) 335, 604, 839
BfaI CTAG 2 cut(s) 828, 992
BfoI RGCGCY 2 cut(s) 573, 656
BglII AGATCT 1 cut(s) 613
BisI GCNGC 9 cut(s) 6, 93, 128, 472, 565, 568, 627, 648, 651
BlpI GCTNAGC 1 cut(s) 1001
BlsI GCNGC 9 cut(s) 7, 94, 129, 473, 566, 569, 628, 649, 652
Bme1390I CCNGG 2 cut(s) 453, 542
Bme18I GGWCC 1 cut(s) 731
BmgBI CACGTC 1 cut(s) 87
BmgT120I GGNCC 1 cut(s) 731
BmiI GGNNCC 4 cut(s) 36, 367, 571, 654
BmrFI CCNGG 2 cut(s) 453, 542
BmsI GCATC 2 cut(s) 114, 800
BpiI GAAGAC 2 cut(s) 61, 984
BpmI CTGGAG 1 cut(s) 173
Bpu10I CCTNAGC 1 cut(s) 509
Bpu1102I GCTNAGC 1 cut(s) 1001
BpuMI CCSGG 1 cut(s) 453
BsaHI GRCGYC 7 cut(s) 95, 249, 284, 441, 570, 653, 873
BsaJI CCNNGG 6 cut(s) 145, 171, 243, 484, 786, 1026
BsaXI ACNNNNNCTCC 6 cut(s) 33, 63, 196, 226, 426, 456
Bse118I RCCGGY 4 cut(s) 31, 680, 715, 766
Bse1I ACTGG 1 cut(s) 190
BseBI CCWGG 1 cut(s) 542
BseDI CCNNGG 6 cut(s) 145, 171, 243, 484, 786, 1026
BseGI GGATG 3 cut(s) 369, 949, 991
BseMII CTCAG 4 cut(s) 523, 624, 882, 1015
BseNI ACTGG 1 cut(s) 190
BseRI GAGGAG 7 cut(s) 35, 38, 41, 44, 94, 349, 374
BseXI GCAGC 2 cut(s) 139, 634
Bsh1236I CGCG 5 cut(s) 92, 111, 132, 474, 584
Bsh1285I CGRYCG 1 cut(s) 582
BshFI GGCC 7 cut(s) 176, 456, 489, 545, 629, 806, 1031
BshNI GGYRCC 2 cut(s) 569, 652
BsiEI CGRYCG 1 cut(s) 582
BsiHKAI GWGCWC 1 cut(s) 725
BslFI GGGAC 2 cut(s) 305, 768
BsmAI GTCTC 3 cut(s) 335, 604, 839
BsmBI CGTCTC 1 cut(s) 335
BsmFI GGGAC 2 cut(s) 305, 768
BsnI GGCC 7 cut(s) 176, 456, 489, 545, 629, 806, 1031
Bsp1286I GDGCHC 1 cut(s) 725
Bsp143I GATC 9 cut(s) 20, 99, 198, 273, 350, 415, 613, 688, 775
Bsp1720I GCTNAGC 1 cut(s) 1001
Bsp19I CCATGG 1 cut(s) 171
BspANI GGCC 7 cut(s) 176, 456, 489, 545, 629, 806, 1031
BspCNI CTCAG 4 cut(s) 522, 623, 883, 1014
BspFNI CGCG 5 cut(s) 92, 111, 132, 474, 584
BspLI GGNNCC 4 cut(s) 36, 367, 571, 654
BspPI GGATC 6 cut(s) 193, 268, 345, 410, 696, 783
BspT107I GGYRCC 2 cut(s) 569, 652
BsrBI CCGCTC 1 cut(s) 609
BsrFI RCCGGY 4 cut(s) 31, 680, 715, 766
BsrI ACTGG 1 cut(s) 190
BssAI RCCGGY 4 cut(s) 31, 680, 715, 766
BssECI CCNNGG 6 cut(s) 145, 171, 243, 484, 786, 1026
BssMI GATC 9 cut(s) 20, 99, 198, 273, 350, 415, 613, 688, 775
BssNI GRCGYC 7 cut(s) 95, 249, 284, 441, 570, 653, 873
BssT1I CCWWGG 2 cut(s) 171, 1026
Bst2UI CCWGG 1 cut(s) 542
Bst4CI ACNGT 6 cut(s) 16, 530, 580, 598, 639, 801
Bst6I CTCTTC 1 cut(s) 263
BstACI GRCGYC 7 cut(s) 95, 249, 284, 441, 570, 653, 873
BstAPI GCANNNNNTGC 1 cut(s) 133
BstC8I GCNNGC 4 cut(s) 134, 562, 682, 768
BstDEI CTNAG 4 cut(s) 509, 610, 891, 1001
BstDSI CCRYGG 4 cut(s) 145, 171, 243, 484
BstF5I GGATG 3 cut(s) 369, 949, 991
BstFNI CGCG 5 cut(s) 92, 111, 132, 474, 584
BstH2I RGCGCY 2 cut(s) 573, 656
BstHHI GCGC 5 cut(s) 92, 132, 572, 586, 655
BstKTI GATC 9 cut(s) 23, 102, 201, 276, 353, 418, 616, 691, 778
BstMAI GTCTC 3 cut(s) 335, 604, 839
BstMBI GATC 9 cut(s) 20, 99, 198, 273, 350, 415, 613, 688, 775
BstMCI CGRYCG 1 cut(s) 582
BstMWI GCNNNNNNNGC 4 cut(s) 133, 138, 147, 557
BstNI CCWGG 1 cut(s) 542
BstSCI CCNGG 2 cut(s) 451, 540
BstUI CGCG 5 cut(s) 92, 111, 132, 474, 584
BstV1I GCAGC 2 cut(s) 139, 634
BstV2I GAAGAC 2 cut(s) 61, 984
BstX2I RGATCY 3 cut(s) 198, 613, 688
BstYI RGATCY 3 cut(s) 198, 613, 688
BsuRI GGCC 7 cut(s) 176, 456, 489, 545, 629, 806, 1031
BtgI CCRYGG 4 cut(s) 145, 171, 243, 484
BtrI CACGTC 1 cut(s) 87
BtsCI GGATG 3 cut(s) 369, 949, 991
BtsI GCAGTG 2 cut(s) 546, 723
BtsIMutI CAGTG 3 cut(s) 546, 723, 819
Cac8I GCNNGC 4 cut(s) 134, 562, 682, 768
CaiI CAGNNNCTG 1 cut(s) 1015
CfoI GCGC 5 cut(s) 92, 132, 572, 586, 655
Cfr10I RCCGGY 4 cut(s) 31, 680, 715, 766
Cfr13I GGNCC 1 cut(s) 731
CseI GACGC 6 cut(s) 84, 257, 273, 463, 927, 1001
Csp6I GTAC 2 cut(s) 115, 193
CviAII CATG 2 cut(s) 172, 271
CviQI GTAC 2 cut(s) 115, 193
DdeI CTNAG 4 cut(s) 509, 610, 891, 1001
DinI GGCGCC 2 cut(s) 571, 654
DpnI GATC 9 cut(s) 22, 101, 200, 275, 352, 417, 615, 690, 777
DpnII GATC 9 cut(s) 20, 99, 198, 273, 350, 415, 613, 688, 775
DrdI GACNNNNNNGTC 1 cut(s) 872
DseDI GACNNNNNNGTC 1 cut(s) 872
EaeI YGGCCR 2 cut(s) 174, 804
Eam1104I CTCTTC 1 cut(s) 263
EarI CTCTTC 1 cut(s) 263
EciI GGCGGA 3 cut(s) 296, 385, 392
Eco130I CCWWGG 2 cut(s) 171, 1026
Eco47I GGWCC 1 cut(s) 731
Eco57I CTGAAG 1 cut(s) 992
EcoRII CCWGG 1 cut(s) 540
EcoT14I CCWWGG 2 cut(s) 171, 1026
EgeI GGCGCC 2 cut(s) 571, 654
EheI GGCGCC 2 cut(s) 571, 654
ErhI CCWWGG 2 cut(s) 171, 1026
Esp3I CGTCTC 1 cut(s) 335
FaeI CATG 2 cut(s) 175, 274
FaiI YATR 2 cut(s) 173, 272
FaqI GGGAC 2 cut(s) 305, 768
FatI CATG 2 cut(s) 171, 270
FauI CCCGC 1 cut(s) 116
FblI GTMKAC 1 cut(s) 438
Fnu4HI GCNGC 9 cut(s) 6, 93, 128, 472, 565, 568, 627, 648, 651
FokI GGATG 3 cut(s) 356, 956, 998
Fsp4HI GCNGC 9 cut(s) 6, 93, 128, 472, 565, 568, 627, 648, 651
FspBI CTAG 2 cut(s) 828, 992
GlaI GCGC 5 cut(s) 91, 131, 571, 585, 654
GluI GCNGC 9 cut(s) 6, 93, 128, 472, 565, 568, 627, 648, 651
GsuI CTGGAG 1 cut(s) 173
HaeII RGCGCY 2 cut(s) 573, 656
HaeIII GGCC 7 cut(s) 176, 456, 489, 545, 629, 806, 1031
HgaI GACGC 6 cut(s) 84, 257, 273, 463, 927, 1001
HhaI GCGC 5 cut(s) 92, 132, 572, 586, 655
Hin1I GRCGYC 7 cut(s) 95, 249, 284, 441, 570, 653, 873
Hin1II CATG 2 cut(s) 175, 274
Hin6I GCGC 5 cut(s) 90, 130, 570, 584, 653
HinP1I GCGC 5 cut(s) 90, 130, 570, 584, 653
HincII GTYRAC 1 cut(s) 439
HindII GTYRAC 1 cut(s) 439
HinfI GANTC 6 cut(s) 119, 435, 710, 745, 781, 866
HphI GGTGA 7 cut(s) 4, 220, 400, 624, 730, 890, 934
Hpy166II GTNNAC 3 cut(s) 12, 439, 484
Hpy188III TCNNGA 1 cut(s) 82
Hpy8I GTNNAC 3 cut(s) 12, 439, 484
HpyAV CCTTC 3 cut(s) 235, 913, 1016
HpyCH4III ACNGT 6 cut(s) 16, 530, 580, 598, 639, 801
HpyCH4IV ACGT 4 cut(s) 77, 86, 441, 873
HpyCH4V TGCA 2 cut(s) 127, 165
HpyF10VI GCNNNNNNNGC 4 cut(s) 133, 138, 147, 557
HpyF3I CTNAG 4 cut(s) 509, 610, 891, 1001
HpySE526I ACGT 4 cut(s) 77, 86, 441, 873
Hsp92I GRCGYC 7 cut(s) 95, 249, 284, 441, 570, 653, 873
Hsp92II CATG 2 cut(s) 175, 274
HspAI GCGC 5 cut(s) 90, 130, 570, 584, 653
KasI GGCGCC 2 cut(s) 569, 652
KroI GCCGGC 2 cut(s) 680, 766
KroNI GCCGGC 2 cut(s) 682, 768
Kzo9I GATC 9 cut(s) 20, 99, 198, 273, 350, 415, 613, 688, 775
LmnI GCTCC 5 cut(s) 244, 309, 371, 556, 935
Lsp1109I GCAGC 2 cut(s) 139, 634
LweI GCATC 2 cut(s) 114, 800
MaeI CTAG 2 cut(s) 828, 992
MaeII ACGT 4 cut(s) 77, 86, 441, 873
MalI GATC 9 cut(s) 22, 101, 200, 275, 352, 417, 615, 690, 777
MbiI CCGCTC 1 cut(s) 609
MboI GATC 9 cut(s) 20, 99, 198, 273, 350, 415, 613, 688, 775
MboII GAAGA 5 cut(s) 61, 226, 250, 937, 989
MflI RGATCY 3 cut(s) 198, 613, 688
MhlI GDGCHC 1 cut(s) 725
MlsI TGGCCA 1 cut(s) 176
MluCI AATT 2 cut(s) 808, 859
MluNI TGGCCA 1 cut(s) 176
Mly113I GGCGCC 2 cut(s) 570, 653
MlyI GAGTC 6 cut(s) 128, 444, 719, 739, 790, 860
MmeI TCCRAC 5 cut(s) 366, 627, 767, 894, 921
Mox20I TGGCCA 1 cut(s) 176
MroNI GCCGGC 2 cut(s) 680, 766
MscI TGGCCA 1 cut(s) 176
Msp20I TGGCCA 1 cut(s) 176
MspR9I CCNGG 2 cut(s) 453, 542
MvaI CCWGG 1 cut(s) 542
MvnI CGCG 5 cut(s) 92, 111, 132, 474, 584
MwoI GCNNNNNNNGC 4 cut(s) 133, 138, 147, 557
NaeI GCCGGC 2 cut(s) 682, 768
NarI GGCGCC 2 cut(s) 570, 653
NciI CCSGG 1 cut(s) 453
NcoI CCATGG 1 cut(s) 171
NdeII GATC 9 cut(s) 20, 99, 198, 273, 350, 415, 613, 688, 775
NgoMIV GCCGGC 2 cut(s) 680, 766
NlaIII CATG 2 cut(s) 175, 274
NlaIV GGNNCC 4 cut(s) 36, 367, 571, 654
NmeAIII GCCGAG 1 cut(s) 767
PcsI WCGNNNNNNNCGW 5 cut(s) 35, 63, 83, 92, 435
PdiI GCCGGC 2 cut(s) 682, 768
PflFI GACNNNGTC 1 cut(s) 578
PkrI GCNGC 9 cut(s) 7, 94, 129, 473, 566, 569, 628, 649, 652
PleI GAGTC 6 cut(s) 127, 443, 718, 739, 789, 860
PluTI GGCGCC 2 cut(s) 573, 656
PpsI GAGTC 6 cut(s) 127, 443, 718, 739, 789, 860
Psp6I CCWGG 1 cut(s) 540
PspGI CCWGG 1 cut(s) 540
PspN4I GGNNCC 4 cut(s) 36, 367, 571, 654
PspPI GGNCC 1 cut(s) 731
PstNI CAGNNNCTG 1 cut(s) 1015
PsuI RGATCY 3 cut(s) 198, 613, 688
PsyI GACNNNGTC 1 cut(s) 578
RsaI GTAC 2 cut(s) 116, 194
RsaNI GTAC 2 cut(s) 115, 193
SalI GTCGAC 1 cut(s) 437
SatI GCNGC 9 cut(s) 6, 93, 128, 472, 565, 568, 627, 648, 651
Sau3AI GATC 9 cut(s) 20, 99, 198, 273, 350, 415, 613, 688, 775
Sau96I GGNCC 1 cut(s) 731
SchI GAGTC 6 cut(s) 128, 444, 719, 739, 790, 860
ScrFI CCNGG 2 cut(s) 453, 542
SduI GDGCHC 1 cut(s) 725
SfaNI GCATC 2 cut(s) 114, 800
SfoI GGCGCC 2 cut(s) 571, 654
SgrAI CRCCGGYG 1 cut(s) 715
SinI GGWCC 1 cut(s) 731
Sse9I AATT 2 cut(s) 808, 859
SspDI GGCGCC 2 cut(s) 569, 652
SspMI CTAG 2 cut(s) 828, 992
StyD4I CCNGG 2 cut(s) 451, 540
StyI CCWWGG 2 cut(s) 171, 1026
TaaI ACNGT 6 cut(s) 16, 530, 580, 598, 639, 801
TaiI ACGT 4 cut(s) 80, 89, 444, 876
TaqI TCGA 5 cut(s) 98, 122, 267, 438, 1021
TasI AATT 2 cut(s) 808, 859
TauI GCSGC 7 cut(s) 8, 95, 474, 567, 570, 629, 653
TscAI CASTG 3 cut(s) 553, 730, 819
TseI GCWGC 2 cut(s) 127, 647
TspDTI ATGAA 2 cut(s) 897, 990
TspGWI ACGGA 4 cut(s) 260, 317, 631, 866
TspRI CASTG 3 cut(s) 553, 730, 819
Tth111I GACNNNGTC 1 cut(s) 578
VpaK11BI GGWCC 1 cut(s) 731
XmiI GTMKAC 1 cut(s) 438
XspI CTAG 2 cut(s) 828, 992
ZraI GACGTC 2 cut(s) 442, 874
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.