Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0008590

Physical Location & Seq

Genomic Coordinates Reverse (-)

24076789 .. 24077829

Gene Structure 1041 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001997

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGCGATCTTCACCGTCCGAACACTCTCGCTTGTTCCGGTACTCCTCCTCCTCGCCGTCGTCTTCACTTTCCCGACGGGCACGGCGTCGATTTCAACCCGCGAGTACGAGTGGATGCAGCGCGTGCTCCGCAACCACGGCTACAATCTGATCTGCAACGCCATGGCCACCTCTGACCTCCAGTACGAGCTCCTCACGCTCCCGCCCAACGCCTCCTTCACCGTCTTCGCTCCCACCGACGCCTCCCTCTTCGCGCTCGACATGATCCAAACGGCGTCGTATTACATCGACACCCTCCGCGTCCACGTCGTCCCTCTCCGCTTCTCTGTCTCCGACCTCCGATCTATCTCCTCCGGCTCCATCCTCCCCACGCTCCTCCCCTACAGAGCTCTCCGCCTCTCCACCGACCCCCTAGCCGTCTCCGGCGTCGACGTCTTTTTACCCGGCCTTTTCTACTCTCGCCGCGTCGCAGTCCACGGCCTCGGAGGCATCGTCAGTCTCAGCTCTGTTGTTCCCTACGGTTCTCATCTTCCGGCCAGTGCTCCCGTCGCAAGCGGAGTTGCCGATAAGGTCGCGCCCTTGAAAACTGTGTCCAACCGCACAGATCTCTCTCCGGCGGCCACACCACCGTCCGAAGCCGTGTCGAGCATGAATGCTCATTCAAACGGGACGGCCAGCACTGATCTTTCTCCGCTTGTAGCTGAGTCGCCGGTGACCACTGCACCTCCATCTTCTCCGACTGGAGTACACGATAACTCGACGGCTTCCGAAGATTCTCCCTCGGCATCTCCACCGTCACCGTCGGCCGATTCAGTACAGGAGAGACCTAGGGCTTTGTTGATGGAGATTTCAGACGGCAATTCCGACTCCAAGGGTGATGAAATTTCCGAGAAATCGCCGCTGCTGATGGAAGCGCAAGCGGTTGGTGAGGTGAAGAAATGTGGAGCGTTGGATGAGATGACCATTGACTGCTTTGTGCCTGAAGACGGGGATGGACTAGAACAGCTCAGCCTTAAGCGGGTGGTTCGAGCTTTGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

347

Amino Acids

36.53

Weight (kDa)

4.9

Isoelectric Point (pI)

49.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008590)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15190
fragaria_vesca	FvH4_2g02380 FvH4_2g02450 FvH4_2g04910 FvH4_3g08610 FvH4_4g13350 FvH4_4g36540 FvH4_4g36551 FvH4_5g29740
malus_domestica	MD15G1420000.v1.1
prunus_persica	Prupe.1G566000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0223241 RchiOBHm_Chr7g0223251
rosa_laevigata	RLG00000001997
rosa_multiflora	Rmu_co8206110.1_g000001 Rmu_sc0002192.1_g000007 Rmu_sc0009034.1_g000005
rosa_roxburghii	Rroxscaffold_3G00236010
rosa_rugosa	Rorug07G0213800
rosa_samantha	Rh1AG061200 Rh2CG525600 Rh7DG354200
rosa_wichuraiana	Rw7G030520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	435
AccI	GTMKAC	1 cut(s)	429
AccII	CGCG	6 cut(s)	102, 123, 254, 300, 465, 575
AclWI	GGATC	1 cut(s)	259
AcoI	YGGCCR	5 cut(s)	165, 534, 618, 672, 804
AcsI	RAATTY	1 cut(s)	882
AcuI	CTGAAG	1 cut(s)	1002
AcyI	GRCGYC	5 cut(s)	86, 240, 275, 426, 432
AfaI	GTAC	5 cut(s)	42, 107, 185, 747, 816
AfiI	CCNNNNNNNGG	2 cut(s)	986, 1018
AflII	CTTAAG	1 cut(s)	1013
AgsI	TTSAA	3 cut(s)	96, 583, 663
AjiI	CACGTC	1 cut(s)	307
AjuI	GAANNNNNNNTTGG	2 cut(s)	200, 232
AluBI	AGCT	6 cut(s)	190, 389, 504, 701, 1006, 1031
AluI	AGCT	6 cut(s)	190, 389, 504, 701, 1006, 1031
Alw21I	GWGCWC	4 cut(s)	129, 192, 391, 544
Alw26I	GTCTC	4 cut(s)	334, 424, 503, 817
AlwI	GGATC	1 cut(s)	259
AoxI	GGCC	7 cut(s)	165, 445, 478, 534, 618, 672, 804
ApeKI	GCWGC	2 cut(s)	118, 901
ApoI	RAATTY	1 cut(s)	882
AspA2I	CCTAGG	1 cut(s)	827
AspLEI	GCGC	4 cut(s)	123, 256, 577, 916
AsuC2I	CCSGG	1 cut(s)	444
AsuHPI	GGTGA	7 cut(s)	4, 211, 724, 789, 887, 938, 943
AvrII	CCTAGG	1 cut(s)	827
BaeGI	GKGCMC	1 cut(s)	83
BalI	TGGCCA	1 cut(s)	167
BanII	GRGCYC	2 cut(s)	192, 391
BbsI	GAAGAC	3 cut(s)	55, 217, 990
Bbv12I	GWGCWC	4 cut(s)	129, 192, 391, 544
BbvI	GCAGC	2 cut(s)	130, 888
BccI	CCATC	5 cut(s)	368, 736, 835, 901, 986
BcnI	CCSGG	1 cut(s)	444
BcoDI	GTCTC	4 cut(s)	334, 424, 503, 817
BfaI	CTAG	3 cut(s)	413, 828, 998
BfmI	CTRYAG	1 cut(s)	382
BfrI	CTTAAG	1 cut(s)	1013
BglI	GCCNNNNNGGC	1 cut(s)	486
BglII	AGATCT	1 cut(s)	604
BisI	GCNGC	5 cut(s)	119, 463, 618, 899, 902
BlnI	CCTAGG	1 cut(s)	827
BlpI	GCTNAGC	1 cut(s)	1007
BlsI	GCNGC	5 cut(s)	120, 464, 619, 900, 903
Bme1390I	CCNGG	1 cut(s)	444
BmgBI	CACGTC	1 cut(s)	307
BmiI	GGNNCC	1 cut(s)	358
BmrFI	CCNGG	1 cut(s)	444
BmsI	GCATC	3 cut(s)	105, 498, 794
BpiI	GAAGAC	3 cut(s)	55, 217, 990
BpmI	CTGGAG	2 cut(s)	164, 762
Bpu1102I	GCTNAGC	1 cut(s)	1007
BpuMI	CCSGG	1 cut(s)	444
BsaHI	GRCGYC	5 cut(s)	86, 240, 275, 426, 432
BsaI	GGTCTC	1 cut(s)	817
BsaJI	CCNNGG	7 cut(s)	136, 162, 475, 481, 780, 827, 870
BsaWI	WCCGGW	1 cut(s)	37
BsaXI	ACNNNNNCTCC	6 cut(s)	33, 63, 477, 507, 709, 739
Bsc4I	CCNNNNNNNGG	2 cut(s)	986, 1018
Bse118I	RCCGGY	1 cut(s)	709
Bse1I	ACTGG	3 cut(s)	181, 537, 745
BseDI	CCNNGG	7 cut(s)	136, 162, 475, 481, 780, 827, 870
BseGI	GGATG	4 cut(s)	120, 360, 958, 997
BseLI	CCNNNNNNNGG	2 cut(s)	986, 1018
BseMII	CTCAG	3 cut(s)	514, 693, 1021
BseNI	ACTGG	3 cut(s)	181, 537, 745
BseRI	GAGGAG	6 cut(s)	35, 38, 41, 182, 340, 365
BseSI	GKGCMC	1 cut(s)	83
BseX3I	CGGCCG	1 cut(s)	804
BseXI	GCAGC	2 cut(s)	130, 888
BsgI	GTGCAG	1 cut(s)	705
Bsh1236I	CGCG	6 cut(s)	102, 123, 254, 300, 465, 575
Bsh1285I	CGRYCG	1 cut(s)	807
BshFI	GGCC	7 cut(s)	167, 447, 480, 536, 620, 674, 806
BsiEI	CGRYCG	1 cut(s)	807
BsiHKAI	GWGCWC	4 cut(s)	129, 192, 391, 544
BsiSI	CCGG	7 cut(s)	38, 354, 423, 444, 533, 614, 710
BslFI	GGGAC	2 cut(s)	296, 682
BslI	CCNNNNNNNGG	2 cut(s)	986, 1018
BsmAI	GTCTC	4 cut(s)	334, 424, 503, 817
BsmBI	CGTCTC	1 cut(s)	424
BsmFI	GGGAC	2 cut(s)	296, 682
BsmI	GAATGC	1 cut(s)	658
BsnI	GGCC	7 cut(s)	167, 447, 480, 536, 620, 674, 806
Bso31I	GGTCTC	1 cut(s)	817
Bsp1286I	GDGCHC	5 cut(s)	83, 129, 192, 391, 544
Bsp143I	GATC	6 cut(s)	6, 150, 264, 341, 604, 682
Bsp1720I	GCTNAGC	1 cut(s)	1007
Bsp19I	CCATGG	1 cut(s)	162
BspANI	GGCC	7 cut(s)	167, 447, 480, 536, 620, 674, 806
BspCNI	CTCAG	3 cut(s)	513, 694, 1020
BspFNI	CGCG	6 cut(s)	102, 123, 254, 300, 465, 575
BspLI	GGNNCC	1 cut(s)	358
BspPI	GGATC	1 cut(s)	259
BspTI	CTTAAG	1 cut(s)	1013
BspTNI	GGTCTC	1 cut(s)	817
BsrFI	RCCGGY	1 cut(s)	709
BsrI	ACTGG	3 cut(s)	181, 537, 745
BssAI	RCCGGY	1 cut(s)	709
BssECI	CCNNGG	7 cut(s)	136, 162, 475, 481, 780, 827, 870
BssMI	GATC	6 cut(s)	6, 150, 264, 341, 604, 682
BssNI	GRCGYC	5 cut(s)	86, 240, 275, 426, 432
BssT1I	CCWWGG	3 cut(s)	162, 827, 870
Bst4CI	ACNGT	7 cut(s)	16, 223, 521, 589, 630, 795, 801
Bst6I	CTCTTC	1 cut(s)	254
BstACI	GRCGYC	5 cut(s)	86, 240, 275, 426, 432
BstAFI	CTTAAG	1 cut(s)	1013
BstAPI	GCANNNNNTGC	1 cut(s)	124
BstC8I	GCNNGC	4 cut(s)	125, 553, 676, 918
BstDEI	CTNAG	3 cut(s)	500, 702, 1007
BstDSI	CCRYGG	3 cut(s)	136, 162, 475
BstEII	GGTNACC	1 cut(s)	712
BstF5I	GGATG	4 cut(s)	120, 360, 958, 997
BstFNI	CGCG	6 cut(s)	102, 123, 254, 300, 465, 575
BstHHI	GCGC	4 cut(s)	123, 256, 577, 916
BstKTI	GATC	6 cut(s)	9, 153, 267, 344, 607, 685
BstMAI	GTCTC	4 cut(s)	334, 424, 503, 817
BstMBI	GATC	6 cut(s)	6, 150, 264, 341, 604, 682
BstMCI	CGRYCG	1 cut(s)	807
BstMWI	GCNNNNNNNGC	6 cut(s)	124, 129, 138, 196, 486, 548
BstPI	GGTNACC	1 cut(s)	712
BstSCI	CCNGG	1 cut(s)	442
BstSFI	CTRYAG	1 cut(s)	382
BstSLI	GKGCMC	1 cut(s)	83
BstUI	CGCG	6 cut(s)	102, 123, 254, 300, 465, 575
BstV1I	GCAGC	2 cut(s)	130, 888
BstV2I	GAAGAC	3 cut(s)	55, 217, 990
BstX2I	RGATCY	1 cut(s)	604
BstYI	RGATCY	1 cut(s)	604
BstZI	CGGCCG	1 cut(s)	804
BsuRI	GGCC	7 cut(s)	167, 447, 480, 536, 620, 674, 806
BtgI	CCRYGG	3 cut(s)	136, 162, 475
BtrI	CACGTC	1 cut(s)	307
BtsCI	GGATG	4 cut(s)	120, 360, 958, 997
BtsI	GCAGTG	1 cut(s)	717
BtsIMutI	CAGTG	3 cut(s)	544, 678, 717
Cac8I	GCNNGC	4 cut(s)	125, 553, 676, 918
CfoI	GCGC	4 cut(s)	123, 256, 577, 916
Cfr10I	RCCGGY	1 cut(s)	709
CseI	GACGC	6 cut(s)	75, 248, 264, 289, 415, 454
Csp6I	GTAC	5 cut(s)	41, 106, 184, 746, 815
CviAII	CATG	3 cut(s)	163, 262, 649
CviQI	GTAC	5 cut(s)	41, 106, 184, 746, 815
DdeI	CTNAG	3 cut(s)	500, 702, 1007
DpnI	GATC	6 cut(s)	8, 152, 266, 343, 606, 684
DpnII	GATC	6 cut(s)	6, 150, 264, 341, 604, 682
EaeI	YGGCCR	5 cut(s)	165, 534, 618, 672, 804
EagI	CGGCCG	1 cut(s)	804
Eam1104I	CTCTTC	1 cut(s)	254
EarI	CTCTTC	1 cut(s)	254
EciI	GGCGGA	1 cut(s)	383
Ecl136II	GAGCTC	2 cut(s)	190, 389
EclXI	CGGCCG	1 cut(s)	804
Eco130I	CCWWGG	3 cut(s)	162, 827, 870
Eco24I	GRGCYC	2 cut(s)	192, 391
Eco31I	GGTCTC	1 cut(s)	817
Eco52I	CGGCCG	1 cut(s)	804
Eco53kI	GAGCTC	2 cut(s)	190, 389
Eco57I	CTGAAG	1 cut(s)	1002
Eco91I	GGTNACC	1 cut(s)	712
EcoICRI	GAGCTC	2 cut(s)	190, 389
EcoO65I	GGTNACC	1 cut(s)	712
EcoT14I	CCWWGG	3 cut(s)	162, 827, 870
EcoT38I	GRGCYC	2 cut(s)	192, 391
ErhI	CCWWGG	3 cut(s)	162, 827, 870
Esp3I	CGTCTC	1 cut(s)	424
FaeI	CATG	3 cut(s)	166, 265, 652
FaiI	YATR	3 cut(s)	164, 263, 650
FaqI	GGGAC	2 cut(s)	296, 682
FatI	CATG	3 cut(s)	162, 261, 648
FauI	CCCGC	3 cut(s)	107, 210, 1011
FblI	GTMKAC	1 cut(s)	429
Fnu4HI	GCNGC	5 cut(s)	119, 463, 618, 899, 902
FokI	GGATG	4 cut(s)	127, 347, 965, 1004
FriOI	GRGCYC	2 cut(s)	192, 391
Fsp4HI	GCNGC	5 cut(s)	119, 463, 618, 899, 902
FspBI	CTAG	3 cut(s)	413, 828, 998
GlaI	GCGC	4 cut(s)	122, 255, 576, 915
GluI	GCNGC	5 cut(s)	119, 463, 618, 899, 902
GsuI	CTGGAG	2 cut(s)	164, 762
HaeIII	GGCC	7 cut(s)	167, 447, 480, 536, 620, 674, 806
HapII	CCGG	7 cut(s)	38, 354, 423, 444, 533, 614, 710
HgaI	GACGC	6 cut(s)	75, 248, 264, 289, 415, 454
HhaI	GCGC	4 cut(s)	123, 256, 577, 916
Hin1I	GRCGYC	5 cut(s)	86, 240, 275, 426, 432
Hin1II	CATG	3 cut(s)	166, 265, 652
Hin6I	GCGC	4 cut(s)	121, 254, 575, 914
HinP1I	GCGC	4 cut(s)	121, 254, 575, 914
HincII	GTYRAC	1 cut(s)	430
HindII	GTYRAC	1 cut(s)	430
HinfI	GANTC	4 cut(s)	704, 773, 809, 866
HpaII	CCGG	7 cut(s)	38, 354, 423, 444, 533, 614, 710
HphI	GGTGA	7 cut(s)	4, 211, 724, 789, 887, 938, 943
Hpy166II	GTNNAC	4 cut(s)	304, 430, 475, 748
Hpy188III	TCNNGA	1 cut(s)	73
Hpy8I	GTNNAC	4 cut(s)	304, 430, 475, 748
HpyAV	CCTTC	1 cut(s)	226
HpyCH4III	ACNGT	7 cut(s)	16, 223, 521, 589, 630, 795, 801
HpyCH4IV	ACGT	2 cut(s)	306, 432
HpyCH4V	TGCA	3 cut(s)	118, 156, 722
HpyF10VI	GCNNNNNNNGC	6 cut(s)	124, 129, 138, 196, 486, 548
HpyF3I	CTNAG	3 cut(s)	500, 702, 1007
HpySE526I	ACGT	2 cut(s)	306, 432
Hsp92I	GRCGYC	5 cut(s)	86, 240, 275, 426, 432
Hsp92II	CATG	3 cut(s)	166, 265, 652
HspAI	GCGC	4 cut(s)	121, 254, 575, 914
Kzo9I	GATC	6 cut(s)	6, 150, 264, 341, 604, 682
LmnI	GCTCC	8 cut(s)	132, 195, 204, 235, 362, 378, 547, 944
Lsp1109I	GCAGC	2 cut(s)	130, 888
LweI	GCATC	3 cut(s)	105, 498, 794
MaeI	CTAG	3 cut(s)	413, 828, 998
MaeII	ACGT	2 cut(s)	306, 432
MaeIII	GTNAC	2 cut(s)	712, 795
MalI	GATC	6 cut(s)	8, 152, 266, 343, 606, 684
MboI	GATC	6 cut(s)	6, 150, 264, 341, 604, 682
MboII	GAAGA	8 cut(s)	55, 217, 241, 521, 723, 782, 946, 995
MflI	RGATCY	1 cut(s)	604
MhlI	GDGCHC	5 cut(s)	83, 129, 192, 391, 544
MlsI	TGGCCA	1 cut(s)	167
MluCI	AATT	2 cut(s)	859, 882
MluNI	TGGCCA	1 cut(s)	167
MlyI	GAGTC	2 cut(s)	713, 860
MmeI	TCCRAC	5 cut(s)	357, 618, 761, 888, 930
Mox20I	TGGCCA	1 cut(s)	167
MscI	TGGCCA	1 cut(s)	167
MseI	TTAA	2 cut(s)	1014, 1039
Msp20I	TGGCCA	1 cut(s)	167
MspA1I	CMGCKG	1 cut(s)	901
MspCI	CTTAAG	1 cut(s)	1013
MspI	CCGG	7 cut(s)	38, 354, 423, 444, 533, 614, 710
MspR9I	CCNGG	1 cut(s)	444
Mva1269I	GAATGC	1 cut(s)	658
MvnI	CGCG	6 cut(s)	102, 123, 254, 300, 465, 575
MwoI	GCNNNNNNNGC	6 cut(s)	124, 129, 138, 196, 486, 548
NciI	CCSGG	1 cut(s)	444
NcoI	CCATGG	1 cut(s)	162
NdeII	GATC	6 cut(s)	6, 150, 264, 341, 604, 682
NlaIII	CATG	3 cut(s)	166, 265, 652
NlaIV	GGNNCC	1 cut(s)	358
NmeAIII	GCCGAG	1 cut(s)	761
NmuCI	GTSAC	2 cut(s)	712, 795
PcsI	WCGNNNNNNNCGW	4 cut(s)	83, 234, 489, 861
PctI	GAATGC	1 cut(s)	658
PfeI	GAWTC	2 cut(s)	773, 809
PkrI	GCNGC	5 cut(s)	120, 464, 619, 900, 903
PleI	GAGTC	2 cut(s)	712, 860
PpsI	GAGTC	2 cut(s)	712, 860
Psp124BI	GAGCTC	2 cut(s)	192, 391
PspEI	GGTNACC	1 cut(s)	712
PspN4I	GGNNCC	1 cut(s)	358
PsuI	RGATCY	1 cut(s)	604
RsaI	GTAC	5 cut(s)	42, 107, 185, 747, 816
RsaNI	GTAC	5 cut(s)	41, 106, 184, 746, 815
SacI	GAGCTC	2 cut(s)	192, 391
SalI	GTCGAC	1 cut(s)	428
SaqAI	TTAA	2 cut(s)	1014, 1039
SatI	GCNGC	5 cut(s)	119, 463, 618, 899, 902
Sau3AI	GATC	6 cut(s)	6, 150, 264, 341, 604, 682
SchI	GAGTC	2 cut(s)	713, 860
ScrFI	CCNGG	1 cut(s)	444
SduI	GDGCHC	5 cut(s)	83, 129, 192, 391, 544
SfaNI	GCATC	3 cut(s)	105, 498, 794
SfcI	CTRYAG	1 cut(s)	382
SgrAI	CRCCGGYG	1 cut(s)	709
SgrDI	CGTCGACG	1 cut(s)	428
SmlI	CTYRAG	1 cut(s)	1013
SmoI	CTYRAG	1 cut(s)	1013
Sse9I	AATT	2 cut(s)	859, 882
SspMI	CTAG	3 cut(s)	413, 828, 998
SstI	GAGCTC	2 cut(s)	192, 391
StyD4I	CCNGG	1 cut(s)	442
StyI	CCWWGG	3 cut(s)	162, 827, 870
TaaI	ACNGT	7 cut(s)	16, 223, 521, 589, 630, 795, 801
TaiI	ACGT	2 cut(s)	309, 435
TaqI	TCGA	7 cut(s)	89, 258, 288, 429, 644, 758, 1027
TasI	AATT	2 cut(s)	859, 882
TatI	WGTACW	2 cut(s)	745, 814
TauI	GCSGC	3 cut(s)	465, 620, 901
TfiI	GAWTC	2 cut(s)	773, 809
Tru1I	TTAA	2 cut(s)	1014, 1039
Tru9I	TTAA	2 cut(s)	1014, 1039
TscAI	CASTG	3 cut(s)	544, 685, 724
TseFI	GTSAC	2 cut(s)	712, 795
TseI	GCWGC	2 cut(s)	118, 901
Tsp45I	GTSAC	2 cut(s)	712, 795
TspDTI	ATGAA	2 cut(s)	665, 894
TspRI	CASTG	3 cut(s)	544, 685, 724
Vha464I	CTTAAG	1 cut(s)	1013
XapI	RAATTY	1 cut(s)	882
XmaJI	CCTAGG	1 cut(s)	827
XmiI	GTMKAC	1 cut(s)	429
XspI	CTAG	3 cut(s)	413, 828, 998
ZraI	GACGTC	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.