Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8206110.1

Orthogroup ID

OG0008590

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 707

Gene Structure 706 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8206110.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 706 bp

atgcagcgcgtgctccgcaaccacggctacaatctgatctgcaacgccatggccacctctgacctccagtacgagctcctcacgctcccgcccaacgcctccttcaccgtcttcgctcccaccgacgcctccctcttcgcgctcgacatgatccaaacggcgtcgtattacatcgacaccctccgcgtccacgtcgtccctctccgcttctctgtctccgacctccgatctatctcctccggctccatcctccccacgctcctcccctacagagctctccgcctctccacagatcccctcgcagtctccggcgtcgacgtcgttttgcccggccttttctactctcgccgcgtcgccgtccacggcctcggaggcatcgtcagtctcagctctgtcgttccctacggttctcatcttcaggccagtgctcccgtcgcaagcggcggcgccgatatggtcgcgcccttgaaaactgtgtccaaccgcacagatctctctccggcggccacaccaccgtccgaagccgtgtcgctcatgaatgctcattccaacgggacggccagcgctgatctttctccggttgtagctgagtcgccggtgaccactgcatctccatctccgccgactgactcgacggcttccgaagatactccgtcggcatctccaccgtcaccgtcggccgattcagtaccggaaagagctaggg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

235

Amino Acids

24.43

Weight (kDa)

5.4

Isoelectric Point (pI)

56.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008590)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15190
fragaria_vesca	FvH4_2g02380 FvH4_2g02450 FvH4_2g04910 FvH4_3g08610 FvH4_4g13350 FvH4_4g36540 FvH4_4g36551 FvH4_5g29740
malus_domestica	MD15G1420000.v1.1
prunus_persica	Prupe.1G566000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0223241 RchiOBHm_Chr7g0223251
rosa_laevigata	RLG00000001997
rosa_multiflora	Rmu_co8206110.1_g000001 Rmu_sc0002192.1_g000007 Rmu_sc0009034.1_g000005
rosa_roxburghii	Rroxscaffold_3G00236010
rosa_rugosa	Rorug07G0213800
rosa_samantha	Rh1AG061200 Rh2CG525600 Rh7DG354200
rosa_wichuraiana	Rw7G030520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	321
AccB1I	GGYRCC	1 cut(s)	446
AccI	GTMKAC	1 cut(s)	315
AccII	CGCG	5 cut(s)	9, 140, 186, 351, 461
AclWI	GGATC	2 cut(s)	145, 287
AcoI	YGGCCR	4 cut(s)	51, 504, 558, 678
AcuI	CTGAAG	1 cut(s)	401
AcyI	GRCGYC	5 cut(s)	126, 161, 312, 318, 447
AfaI	GTAC	2 cut(s)	71, 690
AfeI	AGCGCT	1 cut(s)	565
AgsI	TTSAA	1 cut(s)	469
AjiI	CACGTC	1 cut(s)	193
AjuI	GAANNNNNNNTTGG	2 cut(s)	86, 118
AluBI	AGCT	5 cut(s)	76, 275, 390, 587, 701
AluI	AGCT	5 cut(s)	76, 275, 390, 587, 701
Alw21I	GWGCWC	4 cut(s)	15, 78, 277, 430
Alw26I	GTCTC	3 cut(s)	220, 310, 389
AlwI	GGATC	2 cut(s)	145, 287
Aor51HI	AGCGCT	1 cut(s)	565
AoxI	GGCC	7 cut(s)	51, 331, 364, 420, 504, 558, 678
ApeKI	GCWGC	1 cut(s)	4
AspLEI	GCGC	5 cut(s)	9, 142, 449, 463, 566
AsuC2I	CCSGG	1 cut(s)	330
AsuHPI	GGTGA	3 cut(s)	97, 610, 663
BalI	TGGCCA	1 cut(s)	53
BanI	GGYRCC	1 cut(s)	446
BanII	GRGCYC	2 cut(s)	78, 277
BbsI	GAAGAC	1 cut(s)	103
Bbv12I	GWGCWC	4 cut(s)	15, 78, 277, 430
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	2 cut(s)	254, 622
BceAI	ACGGC	7 cut(s)	40, 174, 341, 379, 509, 573, 651
BcnI	CCSGG	1 cut(s)	330
BcoDI	GTCTC	3 cut(s)	220, 310, 389
BfaI	CTAG	1 cut(s)	702
BfmI	CTRYAG	1 cut(s)	268
BfoI	RGCGCY	2 cut(s)	450, 567
BglI	GCCNNNNNGGC	1 cut(s)	372
BglII	AGATCT	1 cut(s)	490
BisI	GCNGC	5 cut(s)	5, 349, 442, 445, 504
BlsI	GCNGC	5 cut(s)	6, 350, 443, 446, 505
Bme1390I	CCNGG	1 cut(s)	330
BmgBI	CACGTC	1 cut(s)	193
BmiI	GGNNCC	2 cut(s)	244, 448
BmrFI	CCNGG	1 cut(s)	330
BmsI	GCATC	3 cut(s)	384, 617, 668
BpiI	GAAGAC	1 cut(s)	103
BpmI	CTGGAG	1 cut(s)	50
BpuMI	CCSGG	1 cut(s)	330
BsaHI	GRCGYC	5 cut(s)	126, 161, 312, 318, 447
BsaJI	CCNNGG	4 cut(s)	22, 48, 361, 367
BsaWI	WCCGGW	2 cut(s)	577, 691
BsaXI	ACNNNNNCTCC	4 cut(s)	363, 393, 595, 625
Bse118I	RCCGGY	1 cut(s)	595
Bse1I	ACTGG	2 cut(s)	67, 423
BseDI	CCNNGG	4 cut(s)	22, 48, 361, 367
BseGI	GGATG	1 cut(s)	246
BseMII	CTCAG	2 cut(s)	400, 579
BseNI	ACTGG	2 cut(s)	67, 423
BseRI	GAGGAG	3 cut(s)	68, 226, 251
BseX3I	CGGCCG	1 cut(s)	678
BseXI	GCAGC	1 cut(s)	16
Bsh1236I	CGCG	5 cut(s)	9, 140, 186, 351, 461
Bsh1285I	CGRYCG	1 cut(s)	681
BshFI	GGCC	7 cut(s)	53, 333, 366, 422, 506, 560, 680
BshNI	GGYRCC	1 cut(s)	446
BsiEI	CGRYCG	1 cut(s)	681
BsiHKAI	GWGCWC	4 cut(s)	15, 78, 277, 430
BsiSI	CCGG	7 cut(s)	240, 309, 330, 500, 578, 596, 692
BslFI	GGGAC	2 cut(s)	182, 568
BsmAI	GTCTC	3 cut(s)	220, 310, 389
BsmFI	GGGAC	2 cut(s)	182, 568
BsmI	GAATGC	1 cut(s)	544
BsnI	GGCC	7 cut(s)	53, 333, 366, 422, 506, 560, 680
Bsp1286I	GDGCHC	4 cut(s)	15, 78, 277, 430
Bsp143I	GATC	6 cut(s)	36, 150, 227, 292, 490, 568
Bsp19I	CCATGG	1 cut(s)	48
BspANI	GGCC	7 cut(s)	53, 333, 366, 422, 506, 560, 680
BspCNI	CTCAG	2 cut(s)	399, 580
BspFNI	CGCG	5 cut(s)	9, 140, 186, 351, 461
BspHI	TCATGA	1 cut(s)	534
BspLI	GGNNCC	2 cut(s)	244, 448
BspPI	GGATC	2 cut(s)	145, 287
BspT107I	GGYRCC	1 cut(s)	446
BsrFI	RCCGGY	1 cut(s)	595
BsrI	ACTGG	2 cut(s)	67, 423
BssAI	RCCGGY	1 cut(s)	595
BssECI	CCNNGG	4 cut(s)	22, 48, 361, 367
BssMI	GATC	6 cut(s)	36, 150, 227, 292, 490, 568
BssNI	GRCGYC	5 cut(s)	126, 161, 312, 318, 447
BssT1I	CCWWGG	1 cut(s)	48
Bst4CI	ACNGT	6 cut(s)	109, 407, 475, 516, 669, 675
Bst6I	CTCTTC	1 cut(s)	140
BstACI	GRCGYC	5 cut(s)	126, 161, 312, 318, 447
BstAPI	GCANNNNNTGC	1 cut(s)	10
BstC8I	GCNNGC	3 cut(s)	11, 439, 562
BstDEI	CTNAG	2 cut(s)	386, 588
BstDSI	CCRYGG	3 cut(s)	22, 48, 361
BstEII	GGTNACC	1 cut(s)	598
BstF5I	GGATG	1 cut(s)	246
BstFNI	CGCG	5 cut(s)	9, 140, 186, 351, 461
BstH2I	RGCGCY	2 cut(s)	450, 567
BstHHI	GCGC	5 cut(s)	9, 142, 449, 463, 566
BstKTI	GATC	6 cut(s)	39, 153, 230, 295, 493, 571
BstMAI	GTCTC	3 cut(s)	220, 310, 389
BstMBI	GATC	6 cut(s)	36, 150, 227, 292, 490, 568
BstMCI	CGRYCG	1 cut(s)	681
BstMWI	GCNNNNNNNGC	6 cut(s)	10, 15, 24, 82, 372, 434
BstPI	GGTNACC	1 cut(s)	598
BstSCI	CCNGG	1 cut(s)	328
BstSFI	CTRYAG	1 cut(s)	268
BstUI	CGCG	5 cut(s)	9, 140, 186, 351, 461
BstV1I	GCAGC	1 cut(s)	16
BstV2I	GAAGAC	1 cut(s)	103
BstX2I	RGATCY	2 cut(s)	292, 490
BstYI	RGATCY	2 cut(s)	292, 490
BstZI	CGGCCG	1 cut(s)	678
BsuRI	GGCC	7 cut(s)	53, 333, 366, 422, 506, 560, 680
BtgI	CCRYGG	3 cut(s)	22, 48, 361
BtrI	CACGTC	1 cut(s)	193
BtsCI	GGATG	1 cut(s)	246
BtsI	GCAGTG	1 cut(s)	603
BtsIMutI	CAGTG	2 cut(s)	430, 603
Cac8I	GCNNGC	3 cut(s)	11, 439, 562
CciI	TCATGA	1 cut(s)	534
CfoI	GCGC	5 cut(s)	9, 142, 449, 463, 566
Cfr10I	RCCGGY	1 cut(s)	595
CseI	GACGC	5 cut(s)	134, 150, 175, 301, 340
Csp6I	GTAC	2 cut(s)	70, 689
CviAII	CATG	3 cut(s)	49, 148, 535
CviQI	GTAC	2 cut(s)	70, 689
DdeI	CTNAG	2 cut(s)	386, 588
DinI	GGCGCC	1 cut(s)	448
DpnI	GATC	6 cut(s)	38, 152, 229, 294, 492, 570
DpnII	GATC	6 cut(s)	36, 150, 227, 292, 490, 568
EaeI	YGGCCR	4 cut(s)	51, 504, 558, 678
EagI	CGGCCG	1 cut(s)	678
Eam1104I	CTCTTC	1 cut(s)	140
EarI	CTCTTC	1 cut(s)	140
EciI	GGCGGA	2 cut(s)	269, 609
Ecl136II	GAGCTC	2 cut(s)	76, 275
EclXI	CGGCCG	1 cut(s)	678
Eco130I	CCWWGG	1 cut(s)	48
Eco24I	GRGCYC	2 cut(s)	78, 277
Eco47III	AGCGCT	1 cut(s)	565
Eco52I	CGGCCG	1 cut(s)	678
Eco53kI	GAGCTC	2 cut(s)	76, 275
Eco57I	CTGAAG	1 cut(s)	401
Eco91I	GGTNACC	1 cut(s)	598
EcoICRI	GAGCTC	2 cut(s)	76, 275
EcoO65I	GGTNACC	1 cut(s)	598
EcoT14I	CCWWGG	1 cut(s)	48
EcoT38I	GRGCYC	2 cut(s)	78, 277
EgeI	GGCGCC	1 cut(s)	448
EheI	GGCGCC	1 cut(s)	448
ErhI	CCWWGG	1 cut(s)	48
FaeI	CATG	3 cut(s)	52, 151, 538
FaiI	YATR	4 cut(s)	50, 149, 455, 536
FaqI	GGGAC	2 cut(s)	182, 568
FatI	CATG	3 cut(s)	48, 147, 534
FauI	CCCGC	1 cut(s)	96
FblI	GTMKAC	1 cut(s)	315
Fnu4HI	GCNGC	5 cut(s)	5, 349, 442, 445, 504
FokI	GGATG	1 cut(s)	233
FriOI	GRGCYC	2 cut(s)	78, 277
Fsp4HI	GCNGC	5 cut(s)	5, 349, 442, 445, 504
FspBI	CTAG	1 cut(s)	702
GlaI	GCGC	5 cut(s)	8, 141, 448, 462, 565
GluI	GCNGC	5 cut(s)	5, 349, 442, 445, 504
GsuI	CTGGAG	1 cut(s)	50
HaeII	RGCGCY	2 cut(s)	450, 567
HaeIII	GGCC	7 cut(s)	53, 333, 366, 422, 506, 560, 680
HapII	CCGG	7 cut(s)	240, 309, 330, 500, 578, 596, 692
HgaI	GACGC	5 cut(s)	134, 150, 175, 301, 340
HhaI	GCGC	5 cut(s)	9, 142, 449, 463, 566
Hin1I	GRCGYC	5 cut(s)	126, 161, 312, 318, 447
Hin1II	CATG	3 cut(s)	52, 151, 538
Hin6I	GCGC	5 cut(s)	7, 140, 447, 461, 564
HinP1I	GCGC	5 cut(s)	7, 140, 447, 461, 564
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HinfI	GANTC	3 cut(s)	590, 629, 683
HpaII	CCGG	7 cut(s)	240, 309, 330, 500, 578, 596, 692
HphI	GGTGA	3 cut(s)	97, 610, 663
Hpy166II	GTNNAC	3 cut(s)	190, 316, 361
Hpy188I	TCNGA	7 cut(s)	36, 61, 220, 227, 371, 520, 643
Hpy188III	TCNNGA	1 cut(s)	535
Hpy8I	GTNNAC	3 cut(s)	190, 316, 361
HpyAV	CCTTC	1 cut(s)	112
HpyCH4III	ACNGT	6 cut(s)	109, 407, 475, 516, 669, 675
HpyCH4IV	ACGT	2 cut(s)	192, 318
HpyCH4V	TGCA	3 cut(s)	4, 42, 608
HpyF10VI	GCNNNNNNNGC	6 cut(s)	10, 15, 24, 82, 372, 434
HpyF3I	CTNAG	2 cut(s)	386, 588
HpySE526I	ACGT	2 cut(s)	192, 318
Hsp92I	GRCGYC	5 cut(s)	126, 161, 312, 318, 447
Hsp92II	CATG	3 cut(s)	52, 151, 538
HspAI	GCGC	5 cut(s)	7, 140, 447, 461, 564
KasI	GGCGCC	1 cut(s)	446
Kzo9I	GATC	6 cut(s)	36, 150, 227, 292, 490, 568
LmnI	GCTCC	7 cut(s)	18, 81, 90, 121, 248, 264, 433
Lsp1109I	GCAGC	1 cut(s)	16
LweI	GCATC	3 cut(s)	384, 617, 668
MaeI	CTAG	1 cut(s)	702
MaeII	ACGT	2 cut(s)	192, 318
MaeIII	GTNAC	2 cut(s)	598, 669
MalI	GATC	6 cut(s)	38, 152, 229, 294, 492, 570
MboI	GATC	6 cut(s)	36, 150, 227, 292, 490, 568
MboII	GAAGA	4 cut(s)	103, 127, 407, 656
MflI	RGATCY	2 cut(s)	292, 490
MhlI	GDGCHC	4 cut(s)	15, 78, 277, 430
MlsI	TGGCCA	1 cut(s)	53
MluNI	TGGCCA	1 cut(s)	53
Mly113I	GGCGCC	1 cut(s)	447
MlyI	GAGTC	2 cut(s)	599, 623
MmeI	TCCRAC	3 cut(s)	243, 504, 573
Mox20I	TGGCCA	1 cut(s)	53
MscI	TGGCCA	1 cut(s)	53
Msp20I	TGGCCA	1 cut(s)	53
MspI	CCGG	7 cut(s)	240, 309, 330, 500, 578, 596, 692
MspR9I	CCNGG	1 cut(s)	330
Mva1269I	GAATGC	1 cut(s)	544
MvnI	CGCG	5 cut(s)	9, 140, 186, 351, 461
MwoI	GCNNNNNNNGC	6 cut(s)	10, 15, 24, 82, 372, 434
NarI	GGCGCC	1 cut(s)	447
NciI	CCSGG	1 cut(s)	330
NcoI	CCATGG	1 cut(s)	48
NdeII	GATC	6 cut(s)	36, 150, 227, 292, 490, 568
NlaIII	CATG	3 cut(s)	52, 151, 538
NlaIV	GGNNCC	2 cut(s)	244, 448
NmuCI	GTSAC	2 cut(s)	598, 669
PagI	TCATGA	1 cut(s)	534
PcsI	WCGNNNNNNNCGW	2 cut(s)	120, 375
PctI	GAATGC	1 cut(s)	544
PfeI	GAWTC	1 cut(s)	683
PkrI	GCNGC	5 cut(s)	6, 350, 443, 446, 505
PleI	GAGTC	2 cut(s)	598, 623
PluTI	GGCGCC	1 cut(s)	450
PpsI	GAGTC	2 cut(s)	598, 623
Psp124BI	GAGCTC	2 cut(s)	78, 277
PspEI	GGTNACC	1 cut(s)	598
PspN4I	GGNNCC	2 cut(s)	244, 448
PsuI	RGATCY	2 cut(s)	292, 490
RsaI	GTAC	2 cut(s)	71, 690
RsaNI	GTAC	2 cut(s)	70, 689
SacI	GAGCTC	2 cut(s)	78, 277
SalI	GTCGAC	1 cut(s)	314
SatI	GCNGC	5 cut(s)	5, 349, 442, 445, 504
Sau3AI	GATC	6 cut(s)	36, 150, 227, 292, 490, 568
SchI	GAGTC	2 cut(s)	599, 623
ScrFI	CCNGG	1 cut(s)	330
SduI	GDGCHC	4 cut(s)	15, 78, 277, 430
SfaNI	GCATC	3 cut(s)	384, 617, 668
SfcI	CTRYAG	1 cut(s)	268
SfoI	GGCGCC	1 cut(s)	448
SgrAI	CRCCGGYG	1 cut(s)	595
SgrDI	CGTCGACG	1 cut(s)	314
SspDI	GGCGCC	1 cut(s)	446
SspMI	CTAG	1 cut(s)	702
SstI	GAGCTC	2 cut(s)	78, 277
StyD4I	CCNGG	1 cut(s)	328
StyI	CCWWGG	1 cut(s)	48
TaaI	ACNGT	6 cut(s)	109, 407, 475, 516, 669, 675
TaiI	ACGT	2 cut(s)	195, 321
TaqI	TCGA	4 cut(s)	144, 174, 315, 632
TauI	GCSGC	4 cut(s)	351, 444, 447, 506
TfiI	GAWTC	1 cut(s)	683
TscAI	CASTG	2 cut(s)	430, 610
TseFI	GTSAC	2 cut(s)	598, 669
TseI	GCWGC	1 cut(s)	4
Tsp45I	GTSAC	2 cut(s)	598, 669
TspDTI	ATGAA	1 cut(s)	551
TspGWI	ACGGA	1 cut(s)	642
TspRI	CASTG	2 cut(s)	430, 610
XmiI	GTMKAC	1 cut(s)	315
XspI	CTAG	1 cut(s)	702
ZraI	GACGTC	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.