Rh1AG061200

Fasciclin-like arabinogalactan protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Forward (+)
10085764 .. 10086664
901 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG061200.1

Sequence Viewer

Length: 294 bp
ATGCTCCTCCCATCCAGCGCTCTCCGCCTTTCCACCGACCCACTCGCCGTCTCCAAAGTCGGCGTTGTGTTGCCTGGCCTTTTCTACTCTCGTCGTGTCGTAGTCCCCGGCCTCGGAGGCATCGTCAGCCTCAACTCTCTCATTCCCTACGGTTCTCATCATCGTCAGGCCTATCCTCCCGTCGCAAGCGTCGATGCTGATAAGGTCACGCCCTTGAAAACTGTGTCCAACTGCAGAGATTTCTCTTTGGCTGCATCGATGCCCTCACCAACAATGTCAGCGTTAGAGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

97

Amino Acids

10.13

Weight (kDa)

9.43

Isoelectric Point (pI)

45.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 25
AfeI AGCGCT 1 cut(s) 19
AfiI CCNNNNNNNGG 1 cut(s) 113
AgsI TTSAA 1 cut(s) 217
AjnI CCWGG 1 cut(s) 73
Alw26I GTCTC 1 cut(s) 55
Aor51HI AGCGCT 1 cut(s) 19
AoxI GGCC 3 cut(s) 76, 109, 168
ApeKI GCWGC 1 cut(s) 251
AspLEI GCGC 1 cut(s) 20
AsuC2I CCSGG 1 cut(s) 108
AsuHPI GGTGA 1 cut(s) 258
BbvI GCAGC 1 cut(s) 238
BccI CCATC 1 cut(s) 19
BceAI ACGGC 1 cut(s) 32
BciT130I CCWGG 1 cut(s) 75
BcnI CCSGG 1 cut(s) 108
BcoDI GTCTC 1 cut(s) 55
BfmI CTRYAG 1 cut(s) 232
BfoI RGCGCY 1 cut(s) 21
BglI GCCNNNNNGGC 1 cut(s) 117
BisI GCNGC 1 cut(s) 252
BlsI GCNGC 1 cut(s) 253
Bme1390I CCNGG 2 cut(s) 75, 108
BmrFI CCNGG 2 cut(s) 75, 108
BmsI GCATC 4 cut(s) 129, 184, 249, 263
BpuMI CCSGG 1 cut(s) 108
Bsa29I ATCGAT 1 cut(s) 257
BsaJI CCNNGG 2 cut(s) 106, 112
BsaXI ACNNNNNCTCC 2 cut(s) 108, 138
Bsc4I CCNNNNNNNGG 1 cut(s) 113
BseBI CCWGG 1 cut(s) 75
BseCI ATCGAT 1 cut(s) 257
BseDI CCNNGG 2 cut(s) 106, 112
BseGI GGATG 1 cut(s) 11
BseLI CCNNNNNNNGG 1 cut(s) 113
BseXI GCAGC 1 cut(s) 238
BshFI GGCC 3 cut(s) 78, 111, 170
BshVI ATCGAT 1 cut(s) 257
BsiSI CCGG 1 cut(s) 108
BslFI GGGAC 1 cut(s) 89
BslI CCNNNNNNNGG 1 cut(s) 113
BsmAI GTCTC 1 cut(s) 55
BsmBI CGTCTC 1 cut(s) 55
BsmFI GGGAC 1 cut(s) 89
BsnI GGCC 3 cut(s) 78, 111, 170
BspACI CCGC 1 cut(s) 25
BspANI GGCC 3 cut(s) 78, 111, 170
BspDI ATCGAT 1 cut(s) 257
BspMAI CTGCAG 1 cut(s) 236
BssECI CCNNGG 2 cut(s) 106, 112
Bst2UI CCWGG 1 cut(s) 75
Bst4CI ACNGT 2 cut(s) 152, 223
BstC8I GCNNGC 1 cut(s) 187
BstF5I GGATG 1 cut(s) 11
BstH2I RGCGCY 1 cut(s) 21
BstHHI GCGC 1 cut(s) 20
BstMAI GTCTC 1 cut(s) 55
BstMWI GCNNNNNNNGC 3 cut(s) 24, 117, 126
BstNI CCWGG 1 cut(s) 75
BstSCI CCNGG 2 cut(s) 73, 106
BstSFI CTRYAG 1 cut(s) 232
BstV1I GCAGC 1 cut(s) 238
Bsu15I ATCGAT 1 cut(s) 257
BsuRI GGCC 3 cut(s) 78, 111, 170
BsuTUI ATCGAT 1 cut(s) 257
BtsCI GGATG 1 cut(s) 11
Cac8I GCNNGC 1 cut(s) 187
CfoI GCGC 1 cut(s) 20
ClaI ATCGAT 1 cut(s) 257
CseI GACGC 1 cut(s) 178
CviJI RGCY 5 cut(s) 78, 111, 129, 170, 251
CviKI_1 RGCY 5 cut(s) 78, 111, 129, 170, 251
EciI GGCGGA 1 cut(s) 14
Eco147I AGGCCT 1 cut(s) 170
Eco47III AGCGCT 1 cut(s) 19
EcoRII CCWGG 1 cut(s) 73
Esp3I CGTCTC 1 cut(s) 55
FaqI GGGAC 1 cut(s) 89
Fnu4HI GCNGC 1 cut(s) 252
Fsp4HI GCNGC 1 cut(s) 252
GlaI GCGC 1 cut(s) 19
GluI GCNGC 1 cut(s) 252
HaeII RGCGCY 1 cut(s) 21
HaeIII GGCC 3 cut(s) 78, 111, 170
HapII CCGG 1 cut(s) 108
HgaI GACGC 1 cut(s) 178
HhaI GCGC 1 cut(s) 20
Hin6I GCGC 1 cut(s) 18
HinP1I GCGC 1 cut(s) 18
HpaII CCGG 1 cut(s) 108
HphI GGTGA 1 cut(s) 258
Hpy188I TCNGA 1 cut(s) 116
Hpy99I CGWCG 3 cut(s) 96, 185, 194
HpyCH4III ACNGT 2 cut(s) 152, 223
HpyCH4V TGCA 2 cut(s) 234, 254
HpyF10VI GCNNNNNNNGC 3 cut(s) 24, 117, 126
HspAI GCGC 1 cut(s) 18
LmnI GCTCC 1 cut(s) 9
LpnPI CCDG 5 cut(s) 28, 60, 87, 121, 152
Lsp1109I GCAGC 1 cut(s) 238
LweI GCATC 4 cut(s) 129, 184, 249, 263
MaeIII GTNAC 1 cut(s) 205
MmeI TCCRAC 1 cut(s) 252
MnlI CCTC 7 cut(s) 17, 110, 122, 140, 186, 274, 280
MspI CCGG 1 cut(s) 108
MspR9I CCNGG 2 cut(s) 75, 108
MvaI CCWGG 1 cut(s) 75
MwoI GCNNNNNNNGC 3 cut(s) 24, 117, 126
NciI CCSGG 1 cut(s) 108
NmuCI GTSAC 1 cut(s) 205
PceI AGGCCT 1 cut(s) 170
PcsI WCGNNNNNNNCGW 2 cut(s) 120, 189
PkrI GCNGC 1 cut(s) 253
Psp6I CCWGG 1 cut(s) 73
PspGI CCWGG 1 cut(s) 73
PstI CTGCAG 1 cut(s) 236
SatI GCNGC 1 cut(s) 252
ScrFI CCNGG 2 cut(s) 75, 108
SetI ASST 1 cut(s) 207
SfaNI GCATC 4 cut(s) 129, 184, 249, 263
SfcI CTRYAG 1 cut(s) 232
SseBI AGGCCT 1 cut(s) 170
SsiI CCGC 1 cut(s) 25
StuI AGGCCT 1 cut(s) 170
StyD4I CCNGG 2 cut(s) 73, 106
TaaI ACNGT 2 cut(s) 152, 223
TaqI TCGA 2 cut(s) 192, 257
TseFI GTSAC 1 cut(s) 205
TseI GCWGC 1 cut(s) 251
Tsp45I GTSAC 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.