RchiOBHm_Chr7g0223251

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0008590
Physical Location & Seq
Forward (+)
44900058 .. 44901297
1240 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19989

Sequence Viewer

Length: 1029 bp
ATGGCGGCCTTCACCGTCCCAACACTCTCGCTCGTTCCGGTACTCCTCCTCCTCGCCGTCGTCTTCACTTTCCCGACGGGCACGGCGTCGATCTCAACCCGCGAGTACGAGTCGATGCAGCGCGTGCTCCGCAACCACGGCTACAATCTGATCTGCAACGCCATGGCCACCTCTGACCTCCAGTACGAGCTCCTCACGCTCCCGCCCAACGCCTCCTTCACCGTCTTCGCTCCCACCGACGCCTCCCTCTTCGCGCTCGACATGATCCAAACGGCGTCGTATTACATCGACACCCTCCGCGTCCACGTCGTCCCTCTCCGCTTCTCTGTCTCCGACCTCCGATCTATCTCCTCCGGCTCCATCCTCCCCACGCTCCTCCCCTACAGAGCTCTCCGCCTCTCCACCGACCCCCTCGCCGTCTCCGGCGTCGACGTCGTTTTGCCCGGCCTTTTCTACTCTCGCCGCGTCGCCGTCCACGGCCTCGGAGGCATCGTCAGTCTCAGCTCGGTCGTTCCCTACGGTTCTCATCTTCAGGCCAGTGCTCCCGTCGCAAGCGGCGGCGCCGATAAGGTCGCGCCCTTGAAAACTGTGTCCAACCGCACAGATCTCTCTCCGGCGGCCACACCACCGTCCGAAGCCGTGTCGCTCATGAATGCTCATTCCAACGGGACGGCCAGCGCTGATCTTTCTCCGGTTGTATCTGAGTTGCCGGCGACCACTGCATCTCCATCTCCGCCGACTGACTCGACGGCTTCCGAAGATACTCCCTCGGCATCTCCACCGTCACCGTCGGCCGATTCGGTACCGGAAAGAGCTAGGGCTTTGTTGATGGAGATTTCAGACGGCAATTCCGACTCGGAGGGTGATGAAATTTCAGAGAAATCGCCACTGCTGATGGAAGCGCAAGCGGTTGGTGAGGTGAAGAAATGTGGAGCGTTGGATGAGATGACCATTGACTGCTTTGTGCCTGAAGACGGGGATGGACTAGAAAAGCTCAGCCTCCAGCGTCTGGTTCGAGCTTTGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

342

Amino Acids

35.83

Weight (kDa)

4.65

Isoelectric Point (pI)

49.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 435
Acc65I GGTACC 1 cut(s) 802
AccB1I GGYRCC 2 cut(s) 560, 802
AccB7I CCANNNNNTGG 1 cut(s) 1009
AccI GTMKAC 1 cut(s) 429
AccII CGCG 6 cut(s) 102, 123, 254, 300, 465, 575
AclWI GGATC 1 cut(s) 259
AcoI YGGCCR 4 cut(s) 165, 618, 672, 792
AcsI RAATTY 1 cut(s) 870
AcuI CTGAAG 2 cut(s) 515, 990
AcyI GRCGYC 6 cut(s) 86, 240, 275, 426, 432, 561
AfaI GTAC 4 cut(s) 42, 107, 185, 804
AfeI AGCGCT 1 cut(s) 679
AfiI CCNNNNNNNGG 2 cut(s) 974, 1009
AgsI TTSAA 1 cut(s) 583
AjiI CACGTC 1 cut(s) 307
AjuI GAANNNNNNNTTGG 2 cut(s) 200, 232
AluBI AGCT 6 cut(s) 190, 389, 504, 815, 994, 1019
AluI AGCT 6 cut(s) 190, 389, 504, 815, 994, 1019
Alw21I GWGCWC 4 cut(s) 129, 192, 391, 544
Alw26I GTCTC 3 cut(s) 334, 424, 503
AlwI GGATC 1 cut(s) 259
AlwNI CAGNNNCTG 1 cut(s) 1009
Aor51HI AGCGCT 1 cut(s) 679
AoxI GGCC 8 cut(s) 6, 165, 445, 478, 534, 618, 672, 792
ApeKI GCWGC 1 cut(s) 118
ApoI RAATTY 1 cut(s) 870
Asp718I GGTACC 1 cut(s) 802
AspLEI GCGC 6 cut(s) 123, 256, 563, 577, 680, 904
AsuC2I CCSGG 1 cut(s) 444
AsuHPI GGTGA 6 cut(s) 4, 211, 777, 875, 926, 931
BaeGI GKGCMC 1 cut(s) 83
BalI TGGCCA 1 cut(s) 167
BanI GGYRCC 2 cut(s) 560, 802
BanII GRGCYC 2 cut(s) 192, 391
BbsI GAAGAC 3 cut(s) 55, 217, 978
Bbv12I GWGCWC 4 cut(s) 129, 192, 391, 544
BbvI GCAGC 1 cut(s) 130
BccI CCATC 5 cut(s) 368, 736, 823, 889, 974
BcnI CCSGG 1 cut(s) 444
BcoDI GTCTC 3 cut(s) 334, 424, 503
BfaI CTAG 2 cut(s) 816, 986
BfmI CTRYAG 1 cut(s) 382
BfoI RGCGCY 2 cut(s) 564, 681
BglI GCCNNNNNGGC 1 cut(s) 486
BglII AGATCT 1 cut(s) 604
BisI GCNGC 6 cut(s) 6, 119, 463, 556, 559, 618
BlpI GCTNAGC 1 cut(s) 995
BlsI GCNGC 6 cut(s) 7, 120, 464, 557, 560, 619
Bme1390I CCNGG 1 cut(s) 444
BmgBI CACGTC 1 cut(s) 307
BmiI GGNNCC 3 cut(s) 358, 562, 804
BmrFI CCNGG 1 cut(s) 444
BmsI GCATC 4 cut(s) 105, 498, 731, 782
BpiI GAAGAC 3 cut(s) 55, 217, 978
BpmI CTGGAG 2 cut(s) 164, 986
Bpu1102I GCTNAGC 1 cut(s) 995
BpuMI CCSGG 1 cut(s) 444
BsaHI GRCGYC 6 cut(s) 86, 240, 275, 426, 432, 561
BsaJI CCNNGG 5 cut(s) 136, 162, 475, 481, 768
BsaWI WCCGGW 3 cut(s) 37, 691, 805
BsaXI ACNNNNNCTCC 6 cut(s) 33, 63, 477, 507, 709, 739
Bsc4I CCNNNNNNNGG 2 cut(s) 974, 1009
Bse118I RCCGGY 1 cut(s) 709
Bse1I ACTGG 2 cut(s) 181, 537
BseDI CCNNGG 5 cut(s) 136, 162, 475, 481, 768
BseGI GGATG 3 cut(s) 360, 946, 985
BseLI CCNNNNNNNGG 2 cut(s) 974, 1009
BseMII CTCAG 3 cut(s) 514, 693, 1009
BseNI ACTGG 2 cut(s) 181, 537
BseRI GAGGAG 6 cut(s) 35, 38, 41, 182, 340, 365
BseSI GKGCMC 1 cut(s) 83
BseX3I CGGCCG 1 cut(s) 792
BseXI GCAGC 1 cut(s) 130
Bsh1236I CGCG 6 cut(s) 102, 123, 254, 300, 465, 575
Bsh1285I CGRYCG 2 cut(s) 510, 795
BshFI GGCC 8 cut(s) 8, 167, 447, 480, 536, 620, 674, 794
BshNI GGYRCC 2 cut(s) 560, 802
BsiEI CGRYCG 2 cut(s) 510, 795
BsiHKAI GWGCWC 4 cut(s) 129, 192, 391, 544
BsiSI CCGG 8 cut(s) 38, 354, 423, 444, 614, 692, 710, 806
BslFI GGGAC 3 cut(s) 2, 296, 682
BslI CCNNNNNNNGG 2 cut(s) 974, 1009
BsmAI GTCTC 3 cut(s) 334, 424, 503
BsmBI CGTCTC 1 cut(s) 424
BsmFI GGGAC 3 cut(s) 2, 296, 682
BsmI GAATGC 1 cut(s) 658
BsnI GGCC 8 cut(s) 8, 167, 447, 480, 536, 620, 674, 794
Bsp1286I GDGCHC 5 cut(s) 83, 129, 192, 391, 544
Bsp143I GATC 6 cut(s) 90, 150, 264, 341, 604, 682
Bsp1720I GCTNAGC 1 cut(s) 995
Bsp19I CCATGG 1 cut(s) 162
BspANI GGCC 8 cut(s) 8, 167, 447, 480, 536, 620, 674, 794
BspCNI CTCAG 3 cut(s) 513, 694, 1008
BspFNI CGCG 6 cut(s) 102, 123, 254, 300, 465, 575
BspHI TCATGA 1 cut(s) 648
BspLI GGNNCC 3 cut(s) 358, 562, 804
BspPI GGATC 1 cut(s) 259
BspT107I GGYRCC 2 cut(s) 560, 802
BsrFI RCCGGY 1 cut(s) 709
BsrI ACTGG 2 cut(s) 181, 537
BssAI RCCGGY 1 cut(s) 709
BssECI CCNNGG 5 cut(s) 136, 162, 475, 481, 768
BssMI GATC 6 cut(s) 90, 150, 264, 341, 604, 682
BssNI GRCGYC 6 cut(s) 86, 240, 275, 426, 432, 561
BssT1I CCWWGG 1 cut(s) 162
Bst4CI ACNGT 7 cut(s) 16, 223, 521, 589, 630, 783, 789
Bst6I CTCTTC 1 cut(s) 254
BstACI GRCGYC 6 cut(s) 86, 240, 275, 426, 432, 561
BstAPI GCANNNNNTGC 1 cut(s) 124
BstC8I GCNNGC 5 cut(s) 125, 553, 676, 711, 906
BstDEI CTNAG 3 cut(s) 500, 702, 995
BstDSI CCRYGG 3 cut(s) 136, 162, 475
BstF5I GGATG 3 cut(s) 360, 946, 985
BstFNI CGCG 6 cut(s) 102, 123, 254, 300, 465, 575
BstH2I RGCGCY 2 cut(s) 564, 681
BstHHI GCGC 6 cut(s) 123, 256, 563, 577, 680, 904
BstKTI GATC 6 cut(s) 93, 153, 267, 344, 607, 685
BstMAI GTCTC 3 cut(s) 334, 424, 503
BstMBI GATC 6 cut(s) 90, 150, 264, 341, 604, 682
BstMCI CGRYCG 2 cut(s) 510, 795
BstMWI GCNNNNNNNGC 7 cut(s) 124, 129, 138, 196, 486, 548, 719
BstSCI CCNGG 1 cut(s) 442
BstSFI CTRYAG 1 cut(s) 382
BstSLI GKGCMC 1 cut(s) 83
BstUI CGCG 6 cut(s) 102, 123, 254, 300, 465, 575
BstV1I GCAGC 1 cut(s) 130
BstV2I GAAGAC 3 cut(s) 55, 217, 978
BstX2I RGATCY 1 cut(s) 604
BstYI RGATCY 1 cut(s) 604
BstZI CGGCCG 1 cut(s) 792
BsuRI GGCC 8 cut(s) 8, 167, 447, 480, 536, 620, 674, 794
BtgI CCRYGG 3 cut(s) 136, 162, 475
BtrI CACGTC 1 cut(s) 307
BtsCI GGATG 3 cut(s) 360, 946, 985
BtsI GCAGTG 2 cut(s) 717, 887
BtsIMutI CAGTG 3 cut(s) 544, 717, 887
Cac8I GCNNGC 5 cut(s) 125, 553, 676, 711, 906
CaiI CAGNNNCTG 1 cut(s) 1009
CciI TCATGA 1 cut(s) 648
CfoI GCGC 6 cut(s) 123, 256, 563, 577, 680, 904
Cfr10I RCCGGY 1 cut(s) 709
CseI GACGC 7 cut(s) 75, 248, 264, 289, 415, 454, 995
Csp6I GTAC 4 cut(s) 41, 106, 184, 803
CviAII CATG 3 cut(s) 163, 262, 649
CviQI GTAC 4 cut(s) 41, 106, 184, 803
DdeI CTNAG 3 cut(s) 500, 702, 995
DinI GGCGCC 1 cut(s) 562
DpnI GATC 6 cut(s) 92, 152, 266, 343, 606, 684
DpnII GATC 6 cut(s) 90, 150, 264, 341, 604, 682
EaeI YGGCCR 4 cut(s) 165, 618, 672, 792
EagI CGGCCG 1 cut(s) 792
Eam1104I CTCTTC 1 cut(s) 254
EarI CTCTTC 1 cut(s) 254
EciI GGCGGA 2 cut(s) 383, 723
Ecl136II GAGCTC 2 cut(s) 190, 389
EclXI CGGCCG 1 cut(s) 792
Eco130I CCWWGG 1 cut(s) 162
Eco24I GRGCYC 2 cut(s) 192, 391
Eco47III AGCGCT 1 cut(s) 679
Eco52I CGGCCG 1 cut(s) 792
Eco53kI GAGCTC 2 cut(s) 190, 389
Eco57I CTGAAG 2 cut(s) 515, 990
EcoICRI GAGCTC 2 cut(s) 190, 389
EcoT14I CCWWGG 1 cut(s) 162
EcoT38I GRGCYC 2 cut(s) 192, 391
EgeI GGCGCC 1 cut(s) 562
EheI GGCGCC 1 cut(s) 562
ErhI CCWWGG 1 cut(s) 162
Esp3I CGTCTC 1 cut(s) 424
FaeI CATG 3 cut(s) 166, 265, 652
FaiI YATR 3 cut(s) 164, 263, 650
FaqI GGGAC 3 cut(s) 2, 296, 682
FatI CATG 3 cut(s) 162, 261, 648
FauI CCCGC 2 cut(s) 107, 210
FblI GTMKAC 1 cut(s) 429
Fnu4HI GCNGC 6 cut(s) 6, 119, 463, 556, 559, 618
FokI GGATG 3 cut(s) 347, 953, 992
FriOI GRGCYC 2 cut(s) 192, 391
Fsp4HI GCNGC 6 cut(s) 6, 119, 463, 556, 559, 618
FspBI CTAG 2 cut(s) 816, 986
GlaI GCGC 6 cut(s) 122, 255, 562, 576, 679, 903
GluI GCNGC 6 cut(s) 6, 119, 463, 556, 559, 618
GsuI CTGGAG 2 cut(s) 164, 986
HaeII RGCGCY 2 cut(s) 564, 681
HaeIII GGCC 8 cut(s) 8, 167, 447, 480, 536, 620, 674, 794
HapII CCGG 8 cut(s) 38, 354, 423, 444, 614, 692, 710, 806
HgaI GACGC 7 cut(s) 75, 248, 264, 289, 415, 454, 995
HhaI GCGC 6 cut(s) 123, 256, 563, 577, 680, 904
Hin1I GRCGYC 6 cut(s) 86, 240, 275, 426, 432, 561
Hin1II CATG 3 cut(s) 166, 265, 652
Hin6I GCGC 6 cut(s) 121, 254, 561, 575, 678, 902
HinP1I GCGC 6 cut(s) 121, 254, 561, 575, 678, 902
HincII GTYRAC 1 cut(s) 430
HindII GTYRAC 1 cut(s) 430
HinfI GANTC 4 cut(s) 110, 743, 797, 854
HpaII CCGG 8 cut(s) 38, 354, 423, 444, 614, 692, 710, 806
HphI GGTGA 6 cut(s) 4, 211, 777, 875, 926, 931
Hpy166II GTNNAC 3 cut(s) 304, 430, 475
Hpy188III TCNNGA 2 cut(s) 73, 649
Hpy8I GTNNAC 3 cut(s) 304, 430, 475
HpyAV CCTTC 2 cut(s) 19, 226
HpyCH4III ACNGT 7 cut(s) 16, 223, 521, 589, 630, 783, 789
HpyCH4IV ACGT 2 cut(s) 306, 432
HpyCH4V TGCA 3 cut(s) 118, 156, 722
HpyF10VI GCNNNNNNNGC 7 cut(s) 124, 129, 138, 196, 486, 548, 719
HpyF3I CTNAG 3 cut(s) 500, 702, 995
HpySE526I ACGT 2 cut(s) 306, 432
Hsp92I GRCGYC 6 cut(s) 86, 240, 275, 426, 432, 561
Hsp92II CATG 3 cut(s) 166, 265, 652
HspAI GCGC 6 cut(s) 121, 254, 561, 575, 678, 902
KasI GGCGCC 1 cut(s) 560
KpnI GGTACC 1 cut(s) 806
KroI GCCGGC 1 cut(s) 709
KroNI GCCGGC 1 cut(s) 711
Kzo9I GATC 6 cut(s) 90, 150, 264, 341, 604, 682
LmnI GCTCC 8 cut(s) 132, 195, 204, 235, 362, 378, 547, 932
Lsp1109I GCAGC 1 cut(s) 130
LweI GCATC 4 cut(s) 105, 498, 731, 782
MaeI CTAG 2 cut(s) 816, 986
MaeII ACGT 2 cut(s) 306, 432
MaeIII GTNAC 1 cut(s) 783
MalI GATC 6 cut(s) 92, 152, 266, 343, 606, 684
MboI GATC 6 cut(s) 90, 150, 264, 341, 604, 682
MboII GAAGA 7 cut(s) 55, 217, 241, 521, 770, 934, 983
MflI RGATCY 1 cut(s) 604
MhlI GDGCHC 5 cut(s) 83, 129, 192, 391, 544
MlsI TGGCCA 1 cut(s) 167
MluCI AATT 2 cut(s) 847, 870
MluNI TGGCCA 1 cut(s) 167
Mly113I GGCGCC 1 cut(s) 561
MlyI GAGTC 3 cut(s) 119, 737, 848
MmeI TCCRAC 5 cut(s) 357, 618, 687, 876, 918
Mox20I TGGCCA 1 cut(s) 167
MroNI GCCGGC 1 cut(s) 709
MscI TGGCCA 1 cut(s) 167
MseI TTAA 1 cut(s) 1027
Msp20I TGGCCA 1 cut(s) 167
MspI CCGG 8 cut(s) 38, 354, 423, 444, 614, 692, 710, 806
MspR9I CCNGG 1 cut(s) 444
Mva1269I GAATGC 1 cut(s) 658
MvnI CGCG 6 cut(s) 102, 123, 254, 300, 465, 575
MwoI GCNNNNNNNGC 7 cut(s) 124, 129, 138, 196, 486, 548, 719
NaeI GCCGGC 1 cut(s) 711
NarI GGCGCC 1 cut(s) 561
NciI CCSGG 1 cut(s) 444
NcoI CCATGG 1 cut(s) 162
NdeII GATC 6 cut(s) 90, 150, 264, 341, 604, 682
NgoMIV GCCGGC 1 cut(s) 709
NlaIII CATG 3 cut(s) 166, 265, 652
NlaIV GGNNCC 3 cut(s) 358, 562, 804
NmeAIII GCCGAG 1 cut(s) 749
NmuCI GTSAC 1 cut(s) 783
PagI TCATGA 1 cut(s) 648
PcsI WCGNNNNNNNCGW 4 cut(s) 83, 234, 489, 849
PctI GAATGC 1 cut(s) 658
PdiI GCCGGC 1 cut(s) 711
PfeI GAWTC 1 cut(s) 797
PflMI CCANNNNNTGG 1 cut(s) 1009
PkrI GCNGC 6 cut(s) 7, 120, 464, 557, 560, 619
PleI GAGTC 3 cut(s) 118, 737, 848
PluTI GGCGCC 1 cut(s) 564
PpsI GAGTC 3 cut(s) 118, 737, 848
Psp124BI GAGCTC 2 cut(s) 192, 391
PspN4I GGNNCC 3 cut(s) 358, 562, 804
PstNI CAGNNNCTG 1 cut(s) 1009
PsuI RGATCY 1 cut(s) 604
RsaI GTAC 4 cut(s) 42, 107, 185, 804
RsaNI GTAC 4 cut(s) 41, 106, 184, 803
SacI GAGCTC 2 cut(s) 192, 391
SalI GTCGAC 1 cut(s) 428
SaqAI TTAA 1 cut(s) 1027
SatI GCNGC 6 cut(s) 6, 119, 463, 556, 559, 618
Sau3AI GATC 6 cut(s) 90, 150, 264, 341, 604, 682
SchI GAGTC 3 cut(s) 119, 737, 848
ScrFI CCNGG 1 cut(s) 444
SduI GDGCHC 5 cut(s) 83, 129, 192, 391, 544
SfaNI GCATC 4 cut(s) 105, 498, 731, 782
SfcI CTRYAG 1 cut(s) 382
SfoI GGCGCC 1 cut(s) 562
SgrDI CGTCGACG 1 cut(s) 428
Sse9I AATT 2 cut(s) 847, 870
SspDI GGCGCC 1 cut(s) 560
SspMI CTAG 2 cut(s) 816, 986
SstI GAGCTC 2 cut(s) 192, 391
StyD4I CCNGG 1 cut(s) 442
StyI CCWWGG 1 cut(s) 162
TaaI ACNGT 7 cut(s) 16, 223, 521, 589, 630, 783, 789
TaiI ACGT 2 cut(s) 309, 435
TaqI TCGA 7 cut(s) 89, 113, 258, 288, 429, 746, 1015
TaqII GACCGA 1 cut(s) 496
TasI AATT 2 cut(s) 847, 870
TauI GCSGC 5 cut(s) 8, 465, 558, 561, 620
TfiI GAWTC 1 cut(s) 797
Tru1I TTAA 1 cut(s) 1027
Tru9I TTAA 1 cut(s) 1027
TscAI CASTG 3 cut(s) 544, 724, 894
TseFI GTSAC 1 cut(s) 783
TseI GCWGC 1 cut(s) 118
Tsp45I GTSAC 1 cut(s) 783
TspDTI ATGAA 2 cut(s) 665, 882
TspRI CASTG 3 cut(s) 544, 724, 894
Van91I CCANNNNNTGG 1 cut(s) 1009
XapI RAATTY 1 cut(s) 870
XmiI GTMKAC 1 cut(s) 429
XspI CTAG 2 cut(s) 816, 986
ZraI GACGTC 1 cut(s) 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.