Rmu_sc0009034.1_g000005

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009034.1
OG0008590
Physical Location & Seq
Reverse (-)
14361 .. 16397
2037 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009034.1_g000005.1.cds

Sequence Viewer

Length: 789 bp
ctggcatttccgctggccttggcctcgccgacgtcacgtggttcctctaccagacggggactgaatgggtctattcaggttcggtcagggattgtgaaatcgagacgaatttgtggtgatgtagcttgtggcagtgtggttcgtcgtgttttcttgtggcagcgtggttcatctggttcggtcgtggtggactcggggcaacgaggacatggtggagtaggcacaggggtggagctgcactggaagttaggtggtctggaggtggtggctggacctgggccaagccaagcctgctgggccttcttcttgggctactttggactgcagaattttgggctagggtcggacagtgaagtcgtcattctgtcgttgaagtcgtcggtgggttgtgaggtcgtcgatctctctccggcggccacaccaccgtccgaagccgtgtcgctcatgaatgctcattccaacgggacggccagcgctgatctttctccggttgtagctgagtcgccggtgaccactgcatctccatctccgccgactgactcgacggcttccgaagatactccgtcggcatctccaccgtcaccgtcggccgattcagtaccggaaagagctagggctttgttgatggagatttcagacggcaattccgactccgagggtgatgaaatttccgagaaatcgccactgatgatggaagcgcaagtggttggtgaggtgaagaaatgtggagcgttggatgagatgaccattgactgctttgtgcctgaagacggggatggcctggactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

262

Amino Acids

26.82

Weight (kDa)

4.57

Isoelectric Point (pI)

56.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 353
AatII GACGTC 1 cut(s) 35
AciI CCGC 3 cut(s) 11, 413, 530
AcoI YGGCCR 3 cut(s) 414, 468, 588
AcsI RAATTY 3 cut(s) 108, 328, 666
AcuI CTGAAG 1 cut(s) 786
AcvI CACGTG 1 cut(s) 38
AcyI GRCGYC 1 cut(s) 32
AfaI GTAC 1 cut(s) 600
AfeI AGCGCT 1 cut(s) 475
AfiI CCNNNNNNNGG 1 cut(s) 770
AgsI TTSAA 1 cut(s) 373
AjnI CCWGG 2 cut(s) 274, 780
AleI CACNNNNGTG 1 cut(s) 227
AluBI AGCT 4 cut(s) 125, 235, 497, 611
AluI AGCT 4 cut(s) 125, 235, 497, 611
Alw26I GTCTC 1 cut(s) 97
Ama87I CYCGRG 1 cut(s) 193
Aor51HI AGCGCT 1 cut(s) 475
AoxI GGCC 8 cut(s) 15, 21, 278, 297, 414, 468, 588, 778
ApeKI GCWGC 2 cut(s) 160, 235
ApoI RAATTY 3 cut(s) 108, 328, 666
AspLEI GCGC 2 cut(s) 476, 700
AspS9I GGNCC 3 cut(s) 272, 278, 297
AsuHPI GGTGA 6 cut(s) 128, 520, 573, 671, 722, 727
AvaI CYCGRG 1 cut(s) 193
AvaII GGWCC 1 cut(s) 272
BbrPI CACGTG 1 cut(s) 38
BbsI GAAGAC 1 cut(s) 774
BbvI GCAGC 2 cut(s) 172, 222
BccI CCATC 4 cut(s) 532, 619, 685, 770
BceAI ACGGC 4 cut(s) 419, 483, 561, 655
BciT130I CCWGG 2 cut(s) 276, 782
BcoDI GTCTC 1 cut(s) 97
BfaI CTAG 3 cut(s) 338, 612, 787
BfmI CTRYAG 1 cut(s) 323
BfoI RGCGCY 1 cut(s) 477
BglI GCCNNNNNGGC 1 cut(s) 296
BisI GCNGC 3 cut(s) 161, 236, 414
BlsI GCNGC 3 cut(s) 162, 237, 415
Bme1390I CCNGG 2 cut(s) 276, 782
Bme18I GGWCC 1 cut(s) 272
BmeT110I CYCGRG 1 cut(s) 193
BmgT120I GGNCC 3 cut(s) 272, 278, 297
BmiI GGNNCC 1 cut(s) 43
BmrFI CCNGG 2 cut(s) 276, 782
BmsI GCATC 2 cut(s) 527, 578
BpiI GAAGAC 1 cut(s) 774
BpmI CTGGAG 1 cut(s) 278
BsaAI YACGTR 1 cut(s) 38
BsaHI GRCGYC 1 cut(s) 32
BsaJI CCNNGG 3 cut(s) 18, 275, 654
BsaWI WCCGGW 2 cut(s) 487, 601
BsaXI ACNNNNNCTCC 2 cut(s) 505, 535
Bsc4I CCNNNNNNNGG 1 cut(s) 770
Bse118I RCCGGY 1 cut(s) 505
Bse1I ACTGG 1 cut(s) 245
BseBI CCWGG 2 cut(s) 276, 782
BseDI CCNNGG 3 cut(s) 18, 275, 654
BseGI GGATG 2 cut(s) 742, 781
BseLI CCNNNNNNNGG 1 cut(s) 770
BseMII CTCAG 1 cut(s) 489
BseNI ACTGG 1 cut(s) 245
BseX3I CGGCCG 1 cut(s) 588
BseXI GCAGC 2 cut(s) 172, 222
BseYI CCCAGC 1 cut(s) 294
BsgI GTGCAG 1 cut(s) 221
Bsh1285I CGRYCG 2 cut(s) 183, 591
BshFI GGCC 8 cut(s) 17, 23, 280, 299, 416, 470, 590, 780
BsiEI CGRYCG 2 cut(s) 183, 591
BsiHKCI CYCGRG 1 cut(s) 193
BsiSI CCGG 4 cut(s) 410, 488, 506, 602
BslFI GGGAC 2 cut(s) 72, 478
BslI CCNNNNNNNGG 1 cut(s) 770
BsmAI GTCTC 1 cut(s) 97
BsmBI CGTCTC 1 cut(s) 97
BsmFI GGGAC 2 cut(s) 72, 478
BsmI GAATGC 1 cut(s) 454
BsnI GGCC 8 cut(s) 17, 23, 280, 299, 416, 470, 590, 780
BsoBI CYCGRG 1 cut(s) 193
Bsp143I GATC 2 cut(s) 400, 478
BspACI CCGC 3 cut(s) 11, 413, 530
BspANI GGCC 8 cut(s) 17, 23, 280, 299, 416, 470, 590, 780
BspCNI CTCAG 1 cut(s) 490
BspHI TCATGA 1 cut(s) 444
BspLI GGNNCC 1 cut(s) 43
BspMAI CTGCAG 1 cut(s) 327
BsrFI RCCGGY 1 cut(s) 505
BsrI ACTGG 1 cut(s) 245
BssAI RCCGGY 1 cut(s) 505
BssECI CCNNGG 3 cut(s) 18, 275, 654
BssMI GATC 2 cut(s) 400, 478
BssNI GRCGYC 1 cut(s) 32
BssT1I CCWWGG 1 cut(s) 18
Bst2UI CCWGG 2 cut(s) 276, 782
Bst4CI ACNGT 4 cut(s) 350, 426, 579, 585
BstACI GRCGYC 1 cut(s) 32
BstBAI YACGTR 1 cut(s) 38
BstC8I GCNNGC 3 cut(s) 15, 292, 472
BstDEI CTNAG 1 cut(s) 498
BstEII GGTNACC 1 cut(s) 508
BstF5I GGATG 2 cut(s) 742, 781
BstH2I RGCGCY 1 cut(s) 477
BstHHI GCGC 2 cut(s) 476, 700
BstKTI GATC 2 cut(s) 403, 481
BstMAI GTCTC 1 cut(s) 97
BstMBI GATC 2 cut(s) 400, 478
BstMCI CGRYCG 2 cut(s) 183, 591
BstMWI GCNNNNNNNGC 2 cut(s) 291, 296
BstNI CCWGG 2 cut(s) 276, 782
BstPI GGTNACC 1 cut(s) 508
BstSCI CCNGG 2 cut(s) 274, 780
BstSFI CTRYAG 1 cut(s) 323
BstV1I GCAGC 2 cut(s) 172, 222
BstV2I GAAGAC 1 cut(s) 774
BstZI CGGCCG 1 cut(s) 588
BsuRI GGCC 8 cut(s) 17, 23, 280, 299, 416, 470, 590, 780
BtsCI GGATG 2 cut(s) 742, 781
BtsI GCAGTG 2 cut(s) 139, 513
BtsIMutI CAGTG 5 cut(s) 139, 238, 355, 513, 683
Cac8I GCNNGC 3 cut(s) 15, 292, 472
CciI TCATGA 1 cut(s) 444
CfoI GCGC 2 cut(s) 476, 700
Cfr10I RCCGGY 1 cut(s) 505
Cfr13I GGNCC 3 cut(s) 272, 278, 297
Csp6I GTAC 1 cut(s) 599
CviAII CATG 2 cut(s) 209, 445
CviQI GTAC 1 cut(s) 599
DdeI CTNAG 1 cut(s) 498
DpnI GATC 2 cut(s) 402, 480
DpnII GATC 2 cut(s) 400, 478
DrdI GACNNNNNNGTC 1 cut(s) 353
DseDI GACNNNNNNGTC 1 cut(s) 353
EaeI YGGCCR 3 cut(s) 414, 468, 588
EagI CGGCCG 1 cut(s) 588
EciI GGCGGA 1 cut(s) 519
EclXI CGGCCG 1 cut(s) 588
Eco130I CCWWGG 1 cut(s) 18
Eco47I GGWCC 1 cut(s) 272
Eco47III AGCGCT 1 cut(s) 475
Eco52I CGGCCG 1 cut(s) 588
Eco57I CTGAAG 1 cut(s) 786
Eco72I CACGTG 1 cut(s) 38
Eco88I CYCGRG 1 cut(s) 193
Eco91I GGTNACC 1 cut(s) 508
EcoO65I GGTNACC 1 cut(s) 508
EcoRII CCWGG 2 cut(s) 274, 780
EcoT14I CCWWGG 1 cut(s) 18
ErhI CCWWGG 1 cut(s) 18
Esp3I CGTCTC 1 cut(s) 97
FaeI CATG 2 cut(s) 212, 448
FaiI YATR 2 cut(s) 210, 446
FaqI GGGAC 2 cut(s) 72, 478
FatI CATG 2 cut(s) 208, 444
Fnu4HI GCNGC 3 cut(s) 161, 236, 414
FokI GGATG 1 cut(s) 749
Fsp4HI GCNGC 3 cut(s) 161, 236, 414
FspBI CTAG 3 cut(s) 338, 612, 787
GlaI GCGC 2 cut(s) 475, 699
GluI GCNGC 3 cut(s) 161, 236, 414
GsaI CCCAGC 1 cut(s) 298
GsuI CTGGAG 1 cut(s) 278
HaeII RGCGCY 1 cut(s) 477
HaeIII GGCC 8 cut(s) 17, 23, 280, 299, 416, 470, 590, 780
HapII CCGG 4 cut(s) 410, 488, 506, 602
HhaI GCGC 2 cut(s) 476, 700
Hin1I GRCGYC 1 cut(s) 32
Hin1II CATG 2 cut(s) 212, 448
Hin6I GCGC 2 cut(s) 474, 698
HinP1I GCGC 2 cut(s) 474, 698
HinfI GANTC 5 cut(s) 191, 500, 539, 593, 650
HpaII CCGG 4 cut(s) 410, 488, 506, 602
HphI GGTGA 6 cut(s) 128, 520, 573, 671, 722, 727
Hpy166II GTNNAC 1 cut(s) 190
Hpy188I TCNGA 7 cut(s) 346, 430, 553, 637, 649, 655, 673
Hpy188III TCNNGA 3 cut(s) 102, 257, 445
Hpy8I GTNNAC 1 cut(s) 190
Hpy99I CGWCG 7 cut(s) 34, 147, 382, 401, 547, 568, 589
HpyAV CCTTC 1 cut(s) 310
HpyCH4III ACNGT 4 cut(s) 350, 426, 579, 585
HpyCH4IV ACGT 2 cut(s) 32, 37
HpyCH4V TGCA 3 cut(s) 238, 325, 518
HpyF10VI GCNNNNNNNGC 2 cut(s) 291, 296
HpyF3I CTNAG 1 cut(s) 498
HpySE526I ACGT 2 cut(s) 32, 37
Hsp92I GRCGYC 1 cut(s) 32
Hsp92II CATG 2 cut(s) 212, 448
HspAI GCGC 2 cut(s) 474, 698
Kzo9I GATC 2 cut(s) 400, 478
LmnI GCTCC 2 cut(s) 232, 728
Lsp1109I GCAGC 2 cut(s) 172, 222
LweI GCATC 2 cut(s) 527, 578
MaeI CTAG 3 cut(s) 338, 612, 787
MaeII ACGT 2 cut(s) 32, 37
MaeIII GTNAC 3 cut(s) 33, 508, 579
MalI GATC 2 cut(s) 402, 480
MboI GATC 2 cut(s) 400, 478
MboII GAAGA 4 cut(s) 295, 566, 730, 779
MluCI AATT 4 cut(s) 108, 328, 643, 666
MlyI GAGTC 4 cut(s) 185, 509, 533, 644
MmeI TCCRAC 4 cut(s) 324, 483, 672, 714
MnlI CCTC 7 cut(s) 34, 55, 197, 253, 385, 649, 706
MslI CAYNNNNRTG 1 cut(s) 227
MspA1I CMGCKG 1 cut(s) 13
MspI CCGG 4 cut(s) 410, 488, 506, 602
MspR9I CCNGG 2 cut(s) 276, 782
Mva1269I GAATGC 1 cut(s) 454
MvaI CCWGG 2 cut(s) 276, 782
MwoI GCNNNNNNNGC 2 cut(s) 291, 296
NdeII GATC 2 cut(s) 400, 478
NlaIII CATG 2 cut(s) 212, 448
NlaIV GGNNCC 1 cut(s) 43
NmuCI GTSAC 3 cut(s) 33, 508, 579
OliI CACNNNNGTG 1 cut(s) 227
PagI TCATGA 1 cut(s) 444
PcsI WCGNNNNNNNCGW 2 cut(s) 374, 645
PctI GAATGC 1 cut(s) 454
PfeI GAWTC 1 cut(s) 593
PkrI GCNGC 3 cut(s) 162, 237, 415
PleI GAGTC 4 cut(s) 185, 508, 533, 644
PmaCI CACGTG 1 cut(s) 38
PmlI CACGTG 1 cut(s) 38
PpsI GAGTC 4 cut(s) 185, 508, 533, 644
Ppu21I YACGTR 1 cut(s) 38
Psp6I CCWGG 2 cut(s) 274, 780
PspCI CACGTG 1 cut(s) 38
PspEI GGTNACC 1 cut(s) 508
PspFI CCCAGC 1 cut(s) 294
PspGI CCWGG 2 cut(s) 274, 780
PspN4I GGNNCC 1 cut(s) 43
PspPI GGNCC 3 cut(s) 272, 278, 297
PstI CTGCAG 1 cut(s) 327
RsaI GTAC 1 cut(s) 600
RsaNI GTAC 1 cut(s) 599
RseI CAYNNNNRTG 1 cut(s) 227
SatI GCNGC 3 cut(s) 161, 236, 414
Sau3AI GATC 2 cut(s) 400, 478
Sau96I GGNCC 3 cut(s) 272, 278, 297
SchI GAGTC 4 cut(s) 185, 509, 533, 644
ScrFI CCNGG 2 cut(s) 276, 782
SfaNI GCATC 2 cut(s) 527, 578
SfcI CTRYAG 1 cut(s) 323
SgrAI CRCCGGYG 1 cut(s) 505
SinI GGWCC 1 cut(s) 272
SmiMI CAYNNNNRTG 1 cut(s) 227
Sse9I AATT 4 cut(s) 108, 328, 643, 666
SsiI CCGC 3 cut(s) 11, 413, 530
SspMI CTAG 3 cut(s) 338, 612, 787
StyD4I CCNGG 2 cut(s) 274, 780
StyI CCWWGG 1 cut(s) 18
TaaI ACNGT 4 cut(s) 350, 426, 579, 585
TaiI ACGT 2 cut(s) 35, 40
TaqI TCGA 3 cut(s) 101, 399, 542
TaqII GACCGA 2 cut(s) 72, 169
TasI AATT 4 cut(s) 108, 328, 643, 666
TauI GCSGC 1 cut(s) 416
TfiI GAWTC 1 cut(s) 593
TscAI CASTG 5 cut(s) 139, 245, 355, 520, 690
TseFI GTSAC 3 cut(s) 33, 508, 579
TseI GCWGC 2 cut(s) 160, 235
Tsp45I GTSAC 3 cut(s) 33, 508, 579
TspDTI ATGAA 3 cut(s) 159, 461, 678
TspGWI ACGGA 1 cut(s) 552
TspRI CASTG 5 cut(s) 139, 245, 355, 520, 690
VpaK11BI GGWCC 1 cut(s) 272
XapI RAATTY 3 cut(s) 108, 328, 666
XspI CTAG 3 cut(s) 338, 612, 787
ZraI GACGTC 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.