Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0008590

Physical Location & Seq

Genomic Coordinates Reverse (-)

5030282 .. 5030617

Gene Structure 336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g08610.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGCGACGTTCACCGTCCGATCACTCTCGCCGGTTCCGATACTCCTCCTCCTCCTCGCCGTCGCCGTCTTCCTCAATTTCCCGACGTGCGTGGCGTCGATCTCCTCCCACGAGTACGAGTCGATGCAGCTCGTGCTTCGCAACCACGGCTACAATCTCATCTGCAACGCCATGGCCACATCTAACCTCCAGTACGAGATCCTCATGCATGGCTGCATGCATCCTCCCACGCCTCCTTCACCATCTTCGCTCCCACCGACGCCTCCCGCGTCGTCCTACACTGAAACGCTCCACCTCCACTTCGTCCCTCTCCGCCTCTCCCTCTCTGACCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

112

Amino Acids

12.17

Weight (kDa)

6.25

Isoelectric Point (pI)

71.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008590)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15190
fragaria_vesca	FvH4_2g02380 FvH4_2g02450 FvH4_2g04910 FvH4_3g08610 FvH4_4g13350 FvH4_4g36540 FvH4_4g36551 FvH4_5g29740
malus_domestica	MD15G1420000.v1.1
prunus_persica	Prupe.1G566000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0223241 RchiOBHm_Chr7g0223251
rosa_laevigata	RLG00000001997
rosa_multiflora	Rmu_co8206110.1_g000001 Rmu_sc0002192.1_g000007 Rmu_sc0009034.1_g000005
rosa_roxburghii	Rroxscaffold_3G00236010
rosa_rugosa	Rorug07G0213800
rosa_samantha	Rh1AG061200 Rh2CG525600 Rh7DG354200
rosa_wichuraiana	Rw7G030520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	269
AciI	CCGC	2 cut(s)	267, 313
AclWI	GGATC	1 cut(s)	193
AcoI	YGGCCR	1 cut(s)	174
AcyI	GRCGYC	2 cut(s)	95, 260
AfaI	GTAC	2 cut(s)	116, 194
AjiI	CACGTC	1 cut(s)	87
AluBI	AGCT	1 cut(s)	130
AluI	AGCT	1 cut(s)	130
AlwI	GGATC	1 cut(s)	193
AoxI	GGCC	1 cut(s)	174
ApeKI	GCWGC	2 cut(s)	127, 213
AsuHPI	GGTGA	2 cut(s)	4, 231
BalI	TGGCCA	1 cut(s)	176
BauI	CACGAG	2 cut(s)	110, 131
BbsI	GAAGAC	1 cut(s)	61
BbvI	GCAGC	2 cut(s)	139, 200
BccI	CCATC	1 cut(s)	250
BceAI	ACGGC	3 cut(s)	44, 50, 163
BisI	GCNGC	2 cut(s)	128, 214
BlsI	GCNGC	2 cut(s)	129, 215
BmgBI	CACGTC	1 cut(s)	87
BmiI	GGNNCC	1 cut(s)	36
BmsI	GCATC	2 cut(s)	114, 229
BpiI	GAAGAC	1 cut(s)	61
BpmI	CTGGAG	1 cut(s)	173
BsaHI	GRCGYC	2 cut(s)	95, 260
BsaJI	CCNNGG	2 cut(s)	145, 171
BsaXI	ACNNNNNCTCC	2 cut(s)	33, 63
Bse118I	RCCGGY	1 cut(s)	31
Bse1I	ACTGG	1 cut(s)	190
BseDI	CCNNGG	2 cut(s)	145, 171
BseGI	GGATG	1 cut(s)	220
BseNI	ACTGG	1 cut(s)	190
BseRI	GAGGAG	5 cut(s)	35, 38, 41, 44, 94
BseXI	GCAGC	2 cut(s)	139, 200
Bsh1236I	CGCG	1 cut(s)	269
BshFI	GGCC	1 cut(s)	176
BsiSI	CCGG	1 cut(s)	32
BslFI	GGGAC	1 cut(s)	290
BsmFI	GGGAC	1 cut(s)	290
BsnI	GGCC	1 cut(s)	176
Bsp143I	GATC	3 cut(s)	20, 99, 198
Bsp19I	CCATGG	1 cut(s)	171
BspACI	CCGC	2 cut(s)	267, 313
BspANI	GGCC	1 cut(s)	176
BspFNI	CGCG	1 cut(s)	269
BspLI	GGNNCC	1 cut(s)	36
BspPI	GGATC	1 cut(s)	193
BsrFI	RCCGGY	1 cut(s)	31
BsrI	ACTGG	1 cut(s)	190
BssAI	RCCGGY	1 cut(s)	31
BssECI	CCNNGG	2 cut(s)	145, 171
BssMI	GATC	3 cut(s)	20, 99, 198
BssNI	GRCGYC	2 cut(s)	95, 260
BssSI	CACGAG	2 cut(s)	110, 131
BssT1I	CCWWGG	1 cut(s)	171
Bst2BI	CACGAG	2 cut(s)	110, 131
Bst4CI	ACNGT	1 cut(s)	16
BstACI	GRCGYC	2 cut(s)	95, 260
BstAPI	GCANNNNNTGC	1 cut(s)	133
BstC8I	GCNNGC	1 cut(s)	218
BstDSI	CCRYGG	2 cut(s)	145, 171
BstF5I	GGATG	1 cut(s)	220
BstFNI	CGCG	1 cut(s)	269
BstKTI	GATC	3 cut(s)	23, 102, 201
BstMBI	GATC	3 cut(s)	20, 99, 198
BstMWI	GCNNNNNNNGC	2 cut(s)	133, 147
BstNSI	RCATGY	1 cut(s)	220
BstUI	CGCG	1 cut(s)	269
BstV1I	GCAGC	2 cut(s)	139, 200
BstV2I	GAAGAC	1 cut(s)	61
BstX2I	RGATCY	1 cut(s)	198
BstYI	RGATCY	1 cut(s)	198
BsuRI	GGCC	1 cut(s)	176
BtgI	CCRYGG	2 cut(s)	145, 171
BtrI	CACGTC	1 cut(s)	87
BtsCI	GGATG	1 cut(s)	220
BtsIMutI	CAGTG	1 cut(s)	279
Cac8I	GCNNGC	1 cut(s)	218
Cfr10I	RCCGGY	1 cut(s)	31
CseI	GACGC	3 cut(s)	84, 258, 268
Csp6I	GTAC	2 cut(s)	115, 193
CviAII	CATG	4 cut(s)	172, 205, 209, 217
CviJI	RGCY	4 cut(s)	130, 150, 176, 213
CviKI_1	RGCY	4 cut(s)	130, 150, 176, 213
CviQI	GTAC	2 cut(s)	115, 193
DpnI	GATC	3 cut(s)	22, 101, 200
DpnII	GATC	3 cut(s)	20, 99, 198
EaeI	YGGCCR	1 cut(s)	174
EciI	GGCGGA	1 cut(s)	302
Eco130I	CCWWGG	1 cut(s)	171
EcoT14I	CCWWGG	1 cut(s)	171
EcoT22I	ATGCAT	2 cut(s)	210, 222
ErhI	CCWWGG	1 cut(s)	171
FaeI	CATG	4 cut(s)	175, 208, 212, 220
FaiI	YATR	4 cut(s)	173, 206, 210, 218
FaqI	GGGAC	1 cut(s)	290
FatI	CATG	4 cut(s)	171, 204, 208, 216
FauI	CCCGC	1 cut(s)	274
Fnu4HI	GCNGC	2 cut(s)	128, 214
FokI	GGATG	1 cut(s)	207
Fsp4HI	GCNGC	2 cut(s)	128, 214
GluI	GCNGC	2 cut(s)	128, 214
GsuI	CTGGAG	1 cut(s)	173
HaeIII	GGCC	1 cut(s)	176
HapII	CCGG	1 cut(s)	32
HgaI	GACGC	3 cut(s)	84, 258, 268
Hin1I	GRCGYC	2 cut(s)	95, 260
Hin1II	CATG	4 cut(s)	175, 208, 212, 220
HinfI	GANTC	1 cut(s)	119
HpaII	CCGG	1 cut(s)	32
HphI	GGTGA	2 cut(s)	4, 231
Hpy166II	GTNNAC	1 cut(s)	12
Hpy188I	TCNGA	3 cut(s)	20, 39, 328
Hpy188III	TCNNGA	1 cut(s)	82
Hpy8I	GTNNAC	1 cut(s)	12
Hpy99I	CGWCG	6 cut(s)	10, 65, 88, 100, 262, 274
HpyAV	CCTTC	1 cut(s)	246
HpyCH4III	ACNGT	1 cut(s)	16
HpyCH4IV	ACGT	2 cut(s)	8, 86
HpyCH4V	TGCA	5 cut(s)	127, 165, 208, 216, 220
HpyF10VI	GCNNNNNNNGC	2 cut(s)	133, 147
HpySE526I	ACGT	2 cut(s)	8, 86
Hsp92I	GRCGYC	2 cut(s)	95, 260
Hsp92II	CATG	4 cut(s)	175, 208, 212, 220
Kzo9I	GATC	3 cut(s)	20, 99, 198
LmnI	GCTCC	2 cut(s)	255, 294
LpnPI	CCDG	2 cut(s)	45, 203
Lsp1109I	GCAGC	2 cut(s)	139, 200
LweI	GCATC	2 cut(s)	114, 229
MaeII	ACGT	2 cut(s)	8, 86
MalI	GATC	3 cut(s)	22, 101, 200
MboI	GATC	3 cut(s)	20, 99, 198
MboII	GAAGA	2 cut(s)	61, 237
MflI	RGATCY	1 cut(s)	198
MlsI	TGGCCA	1 cut(s)	176
MluCI	AATT	1 cut(s)	76
MluNI	TGGCCA	1 cut(s)	176
MlyI	GAGTC	1 cut(s)	128
Mox20I	TGGCCA	1 cut(s)	176
Mph1103I	ATGCAT	2 cut(s)	210, 222
MscI	TGGCCA	1 cut(s)	176
Msp20I	TGGCCA	1 cut(s)	176
MspI	CCGG	1 cut(s)	32
MvnI	CGCG	1 cut(s)	269
MwoI	GCNNNNNNNGC	2 cut(s)	133, 147
NcoI	CCATGG	1 cut(s)	171
NdeII	GATC	3 cut(s)	20, 99, 198
NlaIII	CATG	4 cut(s)	175, 208, 212, 220
NlaIV	GGNNCC	1 cut(s)	36
NsiI	ATGCAT	2 cut(s)	210, 222
NspI	RCATGY	1 cut(s)	220
PaeI	GCATGC	1 cut(s)	220
PcsI	WCGNNNNNNNCGW	5 cut(s)	35, 63, 92, 254, 266
PkrI	GCNGC	2 cut(s)	129, 215
PleI	GAGTC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	127
PspN4I	GGNNCC	1 cut(s)	36
PsuI	RGATCY	1 cut(s)	198
RsaI	GTAC	2 cut(s)	116, 194
RsaNI	GTAC	2 cut(s)	115, 193
SatI	GCNGC	2 cut(s)	128, 214
Sau3AI	GATC	3 cut(s)	20, 99, 198
SchI	GAGTC	1 cut(s)	128
SetI	ASST	6 cut(s)	11, 89, 132, 189, 297, 333
SfaNI	GCATC	2 cut(s)	114, 229
SphI	GCATGC	1 cut(s)	220
Sse9I	AATT	1 cut(s)	76
SsiI	CCGC	2 cut(s)	267, 313
StyI	CCWWGG	1 cut(s)	171
TaaI	ACNGT	1 cut(s)	16
TaiI	ACGT	2 cut(s)	11, 89
TaqI	TCGA	2 cut(s)	98, 122
TasI	AATT	1 cut(s)	76
TscAI	CASTG	1 cut(s)	286
TseI	GCWGC	2 cut(s)	127, 213
TspRI	CASTG	1 cut(s)	286
XceI	RCATGY	1 cut(s)	220
Zsp2I	ATGCAT	2 cut(s)	210, 222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.