Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0008590

Physical Location & Seq

Genomic Coordinates Reverse (-)

33429348 .. 33429698

Gene Structure 351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g36540.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGCGGCGTTCACCGTCCGATCACTCTCATCAATTCTGATACTCCTCCTCCTCCTCACCACCGTCATCTTCCTCAGTTTCCCGACGTGCACGGCGTCGATCTCTTCCCGCGAGTACGAGTCAATGCAGCGCATGCTTCGCAACCACGGCTACAATCTCATCTGCAACACCATGGCCACCTTTGACCTCCAGTATGAGATCCTCAAGCTTCCTCCCAATGCCTCATTCACCATCTTCGCTCCCACCAACGCCTCCCTCTTCGCCCTCGACATGATCCAAACAATGTCGTCCTACACGGAAACGCTCCGCCTCCACTTCGTCCCTCTCCGCCTCTCCCTCTCCGACCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

117

Amino Acids

13.12

Weight (kDa)

6.7

Isoelectric Point (pI)

48.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008590)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15190
fragaria_vesca	FvH4_2g02380 FvH4_2g02450 FvH4_2g04910 FvH4_3g08610 FvH4_4g13350 FvH4_4g36540 FvH4_4g36551 FvH4_5g29740
malus_domestica	MD15G1420000.v1.1
prunus_persica	Prupe.1G566000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0223241 RchiOBHm_Chr7g0223251
rosa_laevigata	RLG00000001997
rosa_multiflora	Rmu_co8206110.1_g000001 Rmu_sc0002192.1_g000007 Rmu_sc0009034.1_g000005
rosa_roxburghii	Rroxscaffold_3G00236010
rosa_rugosa	Rorug07G0213800
rosa_samantha	Rh1AG061200 Rh2CG525600 Rh7DG354200
rosa_wichuraiana	Rw7G030520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	111
AciI	CCGC	4 cut(s)	5, 109, 307, 328
AclWI	GGATC	2 cut(s)	193, 268
AcoI	YGGCCR	1 cut(s)	174
AcyI	GRCGYC	1 cut(s)	95
AfaI	GTAC	1 cut(s)	116
AjiI	CACGTC	1 cut(s)	87
AjuI	GAANNNNNNNTTGG	2 cut(s)	209, 241
AluBI	AGCT	1 cut(s)	208
AluI	AGCT	1 cut(s)	208
Alw21I	GWGCWC	1 cut(s)	92
Alw44I	GTGCAC	1 cut(s)	88
AlwI	GGATC	2 cut(s)	193, 268
AoxI	GGCC	1 cut(s)	174
ApaLI	GTGCAC	1 cut(s)	88
ApeKI	GCWGC	1 cut(s)	127
AspLEI	GCGC	1 cut(s)	132
AsuHPI	GGTGA	3 cut(s)	4, 49, 220
BaeGI	GKGCMC	1 cut(s)	92
BalI	TGGCCA	1 cut(s)	176
Bbv12I	GWGCWC	1 cut(s)	92
BbvI	GCAGC	1 cut(s)	139
BccI	CCATC	1 cut(s)	239
BceAI	ACGGC	2 cut(s)	108, 163
BisI	GCNGC	2 cut(s)	6, 128
BlsI	GCNGC	2 cut(s)	7, 129
BmgBI	CACGTC	1 cut(s)	87
BpmI	CTGGAG	1 cut(s)	173
BpuEI	CTTGAG	1 cut(s)	188
BsaHI	GRCGYC	1 cut(s)	95
BsaJI	CCNNGG	2 cut(s)	145, 171
BsaXI	ACNNNNNCTCC	2 cut(s)	33, 63
Bse1I	ACTGG	1 cut(s)	190
BseDI	CCNNGG	2 cut(s)	145, 171
BseMII	CTCAG	1 cut(s)	88
BseNI	ACTGG	1 cut(s)	190
BseRI	GAGGAG	4 cut(s)	35, 38, 41, 44
BseSI	GKGCMC	1 cut(s)	92
BseXI	GCAGC	1 cut(s)	139
Bsh1236I	CGCG	1 cut(s)	111
BshFI	GGCC	1 cut(s)	176
BsiHKAI	GWGCWC	1 cut(s)	92
BslFI	GGGAC	1 cut(s)	305
BsmFI	GGGAC	1 cut(s)	305
BsnI	GGCC	1 cut(s)	176
Bsp1286I	GDGCHC	1 cut(s)	92
Bsp143I	GATC	4 cut(s)	20, 99, 198, 273
Bsp19I	CCATGG	1 cut(s)	171
BspACI	CCGC	4 cut(s)	5, 109, 307, 328
BspANI	GGCC	1 cut(s)	176
BspCNI	CTCAG	1 cut(s)	87
BspFNI	CGCG	1 cut(s)	111
BspPI	GGATC	2 cut(s)	193, 268
BsrI	ACTGG	1 cut(s)	190
BssECI	CCNNGG	2 cut(s)	145, 171
BssMI	GATC	4 cut(s)	20, 99, 198, 273
BssNI	GRCGYC	1 cut(s)	95
BssT1I	CCWWGG	1 cut(s)	171
Bst4CI	ACNGT	2 cut(s)	16, 64
Bst6I	CTCTTC	2 cut(s)	109, 263
BstACI	GRCGYC	1 cut(s)	95
BstAPI	GCANNNNNTGC	1 cut(s)	133
BstC8I	GCNNGC	1 cut(s)	134
BstDEI	CTNAG	1 cut(s)	74
BstDSI	CCRYGG	2 cut(s)	145, 171
BstFNI	CGCG	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	132
BstKTI	GATC	4 cut(s)	23, 102, 201, 276
BstMBI	GATC	4 cut(s)	20, 99, 198, 273
BstMWI	GCNNNNNNNGC	3 cut(s)	133, 138, 147
BstNSI	RCATGY	1 cut(s)	136
BstSLI	GKGCMC	1 cut(s)	92
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	1 cut(s)	139
BstX2I	RGATCY	1 cut(s)	198
BstYI	RGATCY	1 cut(s)	198
BsuRI	GGCC	1 cut(s)	176
BtgI	CCRYGG	2 cut(s)	145, 171
BtrI	CACGTC	1 cut(s)	87
Cac8I	GCNNGC	1 cut(s)	134
CfoI	GCGC	1 cut(s)	132
CseI	GACGC	1 cut(s)	84
Csp6I	GTAC	1 cut(s)	115
CviAII	CATG	3 cut(s)	133, 172, 271
CviJI	RGCY	3 cut(s)	150, 176, 208
CviKI_1	RGCY	3 cut(s)	150, 176, 208
CviQI	GTAC	1 cut(s)	115
DdeI	CTNAG	1 cut(s)	74
DpnI	GATC	4 cut(s)	22, 101, 200, 275
DpnII	GATC	4 cut(s)	20, 99, 198, 273
EaeI	YGGCCR	1 cut(s)	174
Eam1104I	CTCTTC	2 cut(s)	109, 263
EarI	CTCTTC	2 cut(s)	109, 263
EciI	GGCGGA	2 cut(s)	296, 317
Eco130I	CCWWGG	1 cut(s)	171
EcoT14I	CCWWGG	1 cut(s)	171
ErhI	CCWWGG	1 cut(s)	171
FaeI	CATG	3 cut(s)	136, 175, 274
FaiI	YATR	4 cut(s)	134, 173, 195, 272
FaqI	GGGAC	1 cut(s)	305
FatI	CATG	3 cut(s)	132, 171, 270
FauI	CCCGC	1 cut(s)	116
Fnu4HI	GCNGC	2 cut(s)	6, 128
Fsp4HI	GCNGC	2 cut(s)	6, 128
GlaI	GCGC	1 cut(s)	131
GluI	GCNGC	2 cut(s)	6, 128
GsuI	CTGGAG	1 cut(s)	173
HaeIII	GGCC	1 cut(s)	176
HgaI	GACGC	1 cut(s)	84
HhaI	GCGC	1 cut(s)	132
Hin1I	GRCGYC	1 cut(s)	95
Hin1II	CATG	3 cut(s)	136, 175, 274
Hin6I	GCGC	1 cut(s)	130
HinP1I	GCGC	1 cut(s)	130
HindIII	AAGCTT	1 cut(s)	206
HinfI	GANTC	1 cut(s)	119
HphI	GGTGA	3 cut(s)	4, 49, 220
Hpy166II	GTNNAC	2 cut(s)	12, 90
Hpy188I	TCNGA	4 cut(s)	20, 39, 343, 350
Hpy188III	TCNNGA	1 cut(s)	82
Hpy8I	GTNNAC	2 cut(s)	12, 90
Hpy99I	CGWCG	2 cut(s)	88, 100
HpyCH4III	ACNGT	2 cut(s)	16, 64
HpyCH4IV	ACGT	1 cut(s)	86
HpyCH4V	TGCA	3 cut(s)	90, 127, 165
HpyF10VI	GCNNNNNNNGC	3 cut(s)	133, 138, 147
HpyF3I	CTNAG	1 cut(s)	74
HpySE526I	ACGT	1 cut(s)	86
Hsp92I	GRCGYC	1 cut(s)	95
Hsp92II	CATG	3 cut(s)	136, 175, 274
HspAI	GCGC	1 cut(s)	130
Kzo9I	GATC	4 cut(s)	20, 99, 198, 273
LmnI	GCTCC	2 cut(s)	244, 309
LpnPI	CCDG	1 cut(s)	203
Lsp1109I	GCAGC	1 cut(s)	139
MaeII	ACGT	1 cut(s)	86
MalI	GATC	4 cut(s)	22, 101, 200, 275
MboI	GATC	4 cut(s)	20, 99, 198, 273
MboII	GAAGA	4 cut(s)	61, 96, 226, 250
MflI	RGATCY	1 cut(s)	198
MhlI	GDGCHC	1 cut(s)	92
MlsI	TGGCCA	1 cut(s)	176
MluCI	AATT	1 cut(s)	33
MluNI	TGGCCA	1 cut(s)	176
MlyI	GAGTC	1 cut(s)	128
Mox20I	TGGCCA	1 cut(s)	176
MscI	TGGCCA	1 cut(s)	176
Msp20I	TGGCCA	1 cut(s)	176
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	3 cut(s)	133, 138, 147
NcoI	CCATGG	1 cut(s)	171
NdeII	GATC	4 cut(s)	20, 99, 198, 273
NlaIII	CATG	3 cut(s)	136, 175, 274
NspI	RCATGY	1 cut(s)	136
PaeI	GCATGC	1 cut(s)	136
PcsI	WCGNNNNNNNCGW	1 cut(s)	92
PkrI	GCNGC	2 cut(s)	7, 129
PleI	GAGTC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	127
PsuI	RGATCY	1 cut(s)	198
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
SatI	GCNGC	2 cut(s)	6, 128
Sau3AI	GATC	4 cut(s)	20, 99, 198, 273
SchI	GAGTC	1 cut(s)	128
SduI	GDGCHC	1 cut(s)	92
SetI	ASST	5 cut(s)	89, 182, 189, 210, 348
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
SphI	GCATGC	1 cut(s)	136
Sse9I	AATT	1 cut(s)	33
SsiI	CCGC	4 cut(s)	5, 109, 307, 328
StyI	CCWWGG	1 cut(s)	171
TaaI	ACNGT	2 cut(s)	16, 64
TaiI	ACGT	1 cut(s)	89
TaqI	TCGA	2 cut(s)	98, 267
TasI	AATT	1 cut(s)	33
TauI	GCSGC	1 cut(s)	8
TseI	GCWGC	1 cut(s)	127
TspGWI	ACGGA	1 cut(s)	311
VneI	GTGCAC	1 cut(s)	88
XceI	RCATGY	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.