Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0008590

Physical Location & Seq

Genomic Coordinates Reverse (-)

70071263 .. 70073523

Gene Structure 2261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG525600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGCTCCTCCCATCCAGTGCTCTTCGCCTTTCCACCGACACCCTCTCCGCCTCCAGAGTCGGCGTCGTGTTGCCCGGCCTTTTCTACTCTCGCCGCGTCACCATCGCCAGCCTCGGAGGCATCGTCAGCCTCAGCTCTCTTGTTCCCTACGGTTCTCATCATAGTCAGGCCAATCCTCCCGTTGCAAGCATCGGCGCCGATAAGGTCCCGCCCTTGAAAACTGTGTCCAACTGCACAGATTTCTCTTTGGCTGCATCGATGCCCTCATCAACAATGTCAGGGATTTACAAACAGAAGACGTGCCGGGATAAAAGAAAACATAAGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

109

Amino Acids

11.53

Weight (kDa)

10.02

Isoelectric Point (pI)

54.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008590)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15190
fragaria_vesca	FvH4_2g02380 FvH4_2g02450 FvH4_2g04910 FvH4_3g08610 FvH4_4g13350 FvH4_4g36540 FvH4_4g36551 FvH4_5g29740
malus_domestica	MD15G1420000.v1.1
prunus_persica	Prupe.1G566000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0223241 RchiOBHm_Chr7g0223251
rosa_laevigata	RLG00000001997
rosa_multiflora	Rmu_co8206110.1_g000001 Rmu_sc0002192.1_g000007 Rmu_sc0009034.1_g000005
rosa_roxburghii	Rroxscaffold_3G00236010
rosa_rugosa	Rorug07G0213800
rosa_samantha	Rh1AG061200 Rh2CG525600 Rh7DG354200
rosa_wichuraiana	Rw7G030520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	194
AccII	CGCG	1 cut(s)	96
AciI	CCGC	3 cut(s)	48, 94, 209
AcyI	GRCGYC	2 cut(s)	63, 195
AgsI	TTSAA	1 cut(s)	217
AjiI	CACGTC	1 cut(s)	300
AluBI	AGCT	1 cut(s)	135
AluI	AGCT	1 cut(s)	135
Alw21I	GWGCWC	1 cut(s)	22
AoxI	GGCC	2 cut(s)	76, 168
ApeKI	GCWGC	1 cut(s)	251
AspLEI	GCGC	1 cut(s)	197
AspS9I	GGNCC	1 cut(s)	205
AsuC2I	CCSGG	2 cut(s)	75, 305
AsuHPI	GGTGA	1 cut(s)	91
AvaII	GGWCC	1 cut(s)	205
BanI	GGYRCC	1 cut(s)	194
BbsI	GAAGAC	1 cut(s)	302
Bbv12I	GWGCWC	1 cut(s)	22
BbvCI	CCTCAGC	1 cut(s)	131
BbvI	GCAGC	1 cut(s)	238
BccI	CCATC	2 cut(s)	19, 110
BcnI	CCSGG	2 cut(s)	75, 305
BfoI	RGCGCY	1 cut(s)	198
BglI	GCCNNNNNGGC	1 cut(s)	117
BisI	GCNGC	2 cut(s)	94, 252
BlsI	GCNGC	2 cut(s)	95, 253
Bme1390I	CCNGG	2 cut(s)	75, 305
Bme18I	GGWCC	1 cut(s)	205
BmgBI	CACGTC	1 cut(s)	300
BmgT120I	GGNCC	1 cut(s)	205
BmiI	GGNNCC	2 cut(s)	196, 207
BmrFI	CCNGG	2 cut(s)	75, 305
BmsI	GCATC	4 cut(s)	129, 198, 249, 263
BpiI	GAAGAC	1 cut(s)	302
BpmI	CTGGAG	1 cut(s)	37
Bpu10I	CCTNAGC	1 cut(s)	131
BpuMI	CCSGG	2 cut(s)	75, 305
Bsa29I	ATCGAT	1 cut(s)	257
BsaHI	GRCGYC	2 cut(s)	63, 195
BsaJI	CCNNGG	1 cut(s)	112
BsaXI	ACNNNNNCTCC	4 cut(s)	29, 59, 108, 138
Bse1I	ACTGG	1 cut(s)	15
BseCI	ATCGAT	1 cut(s)	257
BseDI	CCNNGG	1 cut(s)	112
BseGI	GGATG	1 cut(s)	11
BseMII	CTCAG	1 cut(s)	145
BseNI	ACTGG	1 cut(s)	15
BseXI	GCAGC	1 cut(s)	238
BsgI	GTGCAG	1 cut(s)	217
Bsh1236I	CGCG	1 cut(s)	96
BshFI	GGCC	2 cut(s)	78, 170
BshNI	GGYRCC	1 cut(s)	194
BshVI	ATCGAT	1 cut(s)	257
BsiHKAI	GWGCWC	1 cut(s)	22
BsiSI	CCGG	2 cut(s)	75, 304
BslFI	GGGAC	1 cut(s)	191
BsmFI	GGGAC	1 cut(s)	191
BsnI	GGCC	2 cut(s)	78, 170
Bsp1286I	GDGCHC	1 cut(s)	22
BspACI	CCGC	3 cut(s)	48, 94, 209
BspANI	GGCC	2 cut(s)	78, 170
BspCNI	CTCAG	1 cut(s)	144
BspDI	ATCGAT	1 cut(s)	257
BspFNI	CGCG	1 cut(s)	96
BspLI	GGNNCC	2 cut(s)	196, 207
BspQI	GCTCTTC	1 cut(s)	27
BspT107I	GGYRCC	1 cut(s)	194
BsrI	ACTGG	1 cut(s)	15
BssECI	CCNNGG	1 cut(s)	112
BssNI	GRCGYC	2 cut(s)	63, 195
Bst4CI	ACNGT	2 cut(s)	152, 223
Bst6I	CTCTTC	1 cut(s)	27
BstACI	GRCGYC	2 cut(s)	63, 195
BstC8I	GCNNGC	2 cut(s)	109, 187
BstDEI	CTNAG	1 cut(s)	131
BstF5I	GGATG	1 cut(s)	11
BstFNI	CGCG	1 cut(s)	96
BstH2I	RGCGCY	1 cut(s)	198
BstHHI	GCGC	1 cut(s)	197
BstMWI	GCNNNNNNNGC	2 cut(s)	117, 126
BstSCI	CCNGG	2 cut(s)	73, 303
BstUI	CGCG	1 cut(s)	96
BstV1I	GCAGC	1 cut(s)	238
BstV2I	GAAGAC	1 cut(s)	302
Bsu15I	ATCGAT	1 cut(s)	257
BsuRI	GGCC	2 cut(s)	78, 170
BsuTUI	ATCGAT	1 cut(s)	257
BtgZI	GCGATG	1 cut(s)	88
BtrI	CACGTC	1 cut(s)	300
BtsCI	GGATG	1 cut(s)	11
BtsIMutI	CAGTG	1 cut(s)	22
Cac8I	GCNNGC	2 cut(s)	109, 187
CfoI	GCGC	1 cut(s)	197
Cfr13I	GGNCC	1 cut(s)	205
ClaI	ATCGAT	1 cut(s)	257
CseI	GACGC	2 cut(s)	52, 85
CviJI	RGCY	6 cut(s)	78, 111, 129, 135, 170, 251
CviKI_1	RGCY	6 cut(s)	78, 111, 129, 135, 170, 251
DdeI	CTNAG	1 cut(s)	131
DinI	GGCGCC	1 cut(s)	196
Eam1104I	CTCTTC	1 cut(s)	27
EarI	CTCTTC	1 cut(s)	27
EciI	GGCGGA	1 cut(s)	37
Eco47I	GGWCC	1 cut(s)	205
EcoO109I	RGGNCCY	1 cut(s)	205
EgeI	GGCGCC	1 cut(s)	196
EheI	GGCGCC	1 cut(s)	196
FaiI	YATR	2 cut(s)	162, 321
FaqI	GGGAC	1 cut(s)	191
FauI	CCCGC	1 cut(s)	216
Fnu4HI	GCNGC	2 cut(s)	94, 252
Fsp4HI	GCNGC	2 cut(s)	94, 252
GlaI	GCGC	1 cut(s)	196
GluI	GCNGC	2 cut(s)	94, 252
GsuI	CTGGAG	1 cut(s)	37
HaeII	RGCGCY	1 cut(s)	198
HaeIII	GGCC	2 cut(s)	78, 170
HapII	CCGG	2 cut(s)	75, 304
HgaI	GACGC	2 cut(s)	52, 85
HhaI	GCGC	1 cut(s)	197
Hin1I	GRCGYC	2 cut(s)	63, 195
Hin6I	GCGC	1 cut(s)	195
HinP1I	GCGC	1 cut(s)	195
HinfI	GANTC	1 cut(s)	57
HpaII	CCGG	2 cut(s)	75, 304
HphI	GGTGA	1 cut(s)	91
Hpy188I	TCNGA	1 cut(s)	116
Hpy188III	TCNNGA	1 cut(s)	54
Hpy99I	CGWCG	1 cut(s)	68
HpyCH4III	ACNGT	2 cut(s)	152, 223
HpyCH4IV	ACGT	1 cut(s)	299
HpyCH4V	TGCA	3 cut(s)	185, 234, 254
HpyF10VI	GCNNNNNNNGC	2 cut(s)	117, 126
HpyF3I	CTNAG	1 cut(s)	131
HpySE526I	ACGT	1 cut(s)	299
Hsp92I	GRCGYC	2 cut(s)	63, 195
HspAI	GCGC	1 cut(s)	195
KasI	GGCGCC	1 cut(s)	194
LguI	GCTCTTC	1 cut(s)	27
LmnI	GCTCC	1 cut(s)	9
LpnPI	CCDG	7 cut(s)	28, 67, 88, 121, 152, 264, 317
Lsp1109I	GCAGC	1 cut(s)	238
LweI	GCATC	4 cut(s)	129, 198, 249, 263
MaeII	ACGT	1 cut(s)	299
MaeIII	GTNAC	1 cut(s)	97
MboII	GAAGA	2 cut(s)	14, 307
MhlI	GDGCHC	1 cut(s)	22
Mly113I	GGCGCC	1 cut(s)	195
MlyI	GAGTC	1 cut(s)	66
MmeI	TCCRAC	1 cut(s)	252
MnlI	CCTC	8 cut(s)	17, 53, 61, 110, 122, 140, 186, 274
MspI	CCGG	2 cut(s)	75, 304
MspR9I	CCNGG	2 cut(s)	75, 305
MvnI	CGCG	1 cut(s)	96
MwoI	GCNNNNNNNGC	2 cut(s)	117, 126
NarI	GGCGCC	1 cut(s)	195
NciI	CCSGG	2 cut(s)	75, 305
NlaIV	GGNNCC	2 cut(s)	196, 207
NmuCI	GTSAC	1 cut(s)	97
PciSI	GCTCTTC	1 cut(s)	27
PcsI	WCGNNNNNNNCGW	1 cut(s)	120
PkrI	GCNGC	2 cut(s)	95, 253
PleI	GAGTC	1 cut(s)	65
PluTI	GGCGCC	1 cut(s)	198
PpsI	GAGTC	1 cut(s)	65
PpuMI	RGGWCCY	1 cut(s)	205
Psp5II	RGGWCCY	1 cut(s)	205
PspN4I	GGNNCC	2 cut(s)	196, 207
PspPI	GGNCC	1 cut(s)	205
PspPPI	RGGWCCY	1 cut(s)	205
SapI	GCTCTTC	1 cut(s)	27
SatI	GCNGC	2 cut(s)	94, 252
Sau96I	GGNCC	1 cut(s)	205
SchI	GAGTC	1 cut(s)	66
ScrFI	CCNGG	2 cut(s)	75, 305
SduI	GDGCHC	1 cut(s)	22
SetI	ASST	3 cut(s)	137, 207, 302
SfaNI	GCATC	4 cut(s)	129, 198, 249, 263
SfoI	GGCGCC	1 cut(s)	196
SinI	GGWCC	1 cut(s)	205
SsiI	CCGC	3 cut(s)	48, 94, 209
SspDI	GGCGCC	1 cut(s)	194
StyD4I	CCNGG	2 cut(s)	73, 303
TaaI	ACNGT	2 cut(s)	152, 223
TaiI	ACGT	1 cut(s)	302
TaqI	TCGA	1 cut(s)	257
TauI	GCSGC	1 cut(s)	96
TscAI	CASTG	1 cut(s)	22
TseFI	GTSAC	1 cut(s)	97
TseI	GCWGC	1 cut(s)	251
Tsp45I	GTSAC	1 cut(s)	97
TspRI	CASTG	1 cut(s)	22
VpaK11BI	GGWCC	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.