FvH4_2g02380

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0008590
Physical Location & Seq
Reverse (-)
1937119 .. 1938081
963 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g02380.t1

Sequence Viewer

Length: 963 bp
ATGGCGGCGTTCACCGTCCGATCACTATCTCCGGTTCCGACCCTCCTCCTCCTCCTCGCCGTCACCGTCTTCTTCACTCTCCCGACTGGCGCGTCGTCGGTCTCTTCCGACGAGTACGAGCAGATGCAGCGCGTGCTTCGCAGCCGCGGCTTCAATCTCACCTGCAACGCCATGGATGCAGCCGCGCTCGAGCATGAGATCCTGACACTTCCGGCCAACGACTCCTTCACCATCTTCGCTCCCACAGACGCCTCCCTCTCCGCACTCAACAAGCAGCAAACGGCGTCGTTTTACACCGAATCGCTCCGCCTCCACGTCATCCCTTTCCGCCTCTCGCTTTCCGACCTCCGATCTATCTCCTCCGGCTACCTCCTCCCCCACAGCAGCCTCCGCCTCACCAAAGGCCCGCTCCGAGTCGCCGGAGTCGACGTGGCCGATACCGGGATCTTCTACTCCGGCCGAATCGCCGTACACGGCCTCGCCGGCACCGTGAATCTCAACGACGTGGTGTACTACGGTGGCGGTGATTCGGTCGCGGTGAACCAAAGGTATATGATGGAGGAGAATACCACGGCGGCGGAGACCGAGAAAACGAAAGCAGAGACCGAGAAAACGAGAGCGGAAGCCGAAAAAATGAGGGCGGAGTCCGAAAAGATGAGGGCCGAGTCCGAAAAACTGAGGGCAGACGAAAGAGCATGGATGACTAACAAACGGGCGGTGTGTGTTTTAGCGATCATGGGGTTCGTACTTTTAGCGGGTGGACTCTTTTGGGGGGCTACCTGGCTTGTGCTGATTGGAGATTGGTTGTGCGCTAAAGCTCCTTTCGGAAATCTTAAACATGATCGCGAGTTAGAGAAAGCGAGGGTGGATCAATTGAAGGATCTCCAGGTTGTGGTGCAACAAATGACGACTACCGAGCTGACAGATCTTGTGAACACCTGCAGAAGATTCCAGCGCACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

321

Amino Acids

35.37

Weight (kDa)

6.55

Isoelectric Point (pI)

42.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 52 - 133 3.6e-06 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 170, 947
AasI GACNNNNNNGTC 1 cut(s) 91
Acc36I ACCTGC 2 cut(s) 170, 947
AccB1I GGYRCC 1 cut(s) 485
AccB7I CCANNNNNTGG 1 cut(s) 892
AccBSI CCGCTC 2 cut(s) 409, 620
AccI GTMKAC 1 cut(s) 426
AccII CGCG 6 cut(s) 92, 132, 147, 185, 536, 846
AclWI GGATC 4 cut(s) 193, 452, 876, 888
AcoI YGGCCR 3 cut(s) 213, 432, 457
AcyI GRCGYC 2 cut(s) 249, 284
AfaI GTAC 4 cut(s) 116, 471, 512, 747
AfiI CCNNNNNNNGG 2 cut(s) 441, 892
AgsI TTSAA 2 cut(s) 154, 877
AjiI CACGTC 3 cut(s) 316, 430, 505
AjnI CCWGG 2 cut(s) 779, 885
AjuI GAANNNNNNNTTGG 2 cut(s) 209, 241
AluBI AGCT 2 cut(s) 818, 919
AluI AGCT 2 cut(s) 818, 919
Alw26I GTCTC 3 cut(s) 106, 575, 596
AlwI GGATC 4 cut(s) 193, 452, 876, 888
Ama87I CYCGRG 1 cut(s) 188
AoxI GGCC 6 cut(s) 213, 403, 432, 457, 475, 660
ApeKI GCWGC 5 cut(s) 127, 141, 179, 274, 384
AspLEI GCGC 5 cut(s) 92, 132, 187, 812, 957
AspS9I GGNCC 2 cut(s) 404, 660
AsuC2I CCSGG 1 cut(s) 442
AsuHPI GGTGA 7 cut(s) 4, 55, 151, 220, 388, 536, 550
AvaI CYCGRG 1 cut(s) 188
BanI GGYRCC 1 cut(s) 485
BbsI GAAGAC 1 cut(s) 61
BbvI GCAGC 5 cut(s) 139, 153, 191, 286, 396
BccI CCATC 2 cut(s) 239, 550
BceAI ACGGC 5 cut(s) 44, 297, 452, 490, 588
BciT130I CCWGG 2 cut(s) 781, 887
BcnI CCSGG 1 cut(s) 442
BcoDI GTCTC 3 cut(s) 106, 575, 596
BfmI CTRYAG 1 cut(s) 940
BfuAI ACCTGC 2 cut(s) 170, 947
BglI GCCNNNNNGGC 1 cut(s) 483
BglII AGATCT 1 cut(s) 925
Bme1390I CCNGG 3 cut(s) 442, 781, 887
BmeT110I CYCGRG 1 cut(s) 188
BmgBI CACGTC 3 cut(s) 316, 430, 505
BmgT120I GGNCC 2 cut(s) 404, 660
BmiI GGNNCC 2 cut(s) 36, 487
BmrFI CCNGG 3 cut(s) 442, 781, 887
BmsI GCATC 2 cut(s) 114, 166
BpiI GAAGAC 1 cut(s) 61
BpmI CTGGAG 1 cut(s) 869
BpuMI CCSGG 1 cut(s) 442
BsaBI GATNNNNATC 1 cut(s) 25
BsaHI GRCGYC 2 cut(s) 249, 284
BsaI GGTCTC 3 cut(s) 106, 575, 596
BsaJI CCNNGG 3 cut(s) 145, 171, 570
BsaWI WCCGGW 1 cut(s) 31
BsaXI ACNNNNNCTCC 2 cut(s) 414, 444
Bsc4I CCNNNNNNNGG 2 cut(s) 441, 892
Bse118I RCCGGY 1 cut(s) 482
Bse1I ACTGG 1 cut(s) 91
Bse8I GATNNNNATC 1 cut(s) 25
BseBI CCWGG 2 cut(s) 781, 887
BseDI CCNNGG 3 cut(s) 145, 171, 570
BseGI GGATG 3 cut(s) 181, 318, 705
BseJI GATNNNNATC 1 cut(s) 25
BseLI CCNNNNNNNGG 2 cut(s) 441, 892
BseMII CTCAG 1 cut(s) 668
BseNI ACTGG 1 cut(s) 91
BseRI GAGGAG 7 cut(s) 35, 38, 41, 44, 349, 362, 575
BseX3I CGGCCG 1 cut(s) 457
BseXI GCAGC 5 cut(s) 139, 153, 191, 286, 396
Bsh1236I CGCG 6 cut(s) 92, 132, 147, 185, 536, 846
Bsh1285I CGRYCG 2 cut(s) 460, 534
BshFI GGCC 6 cut(s) 215, 405, 434, 459, 477, 662
BshNI GGYRCC 1 cut(s) 485
BsiEI CGRYCG 2 cut(s) 460, 534
BsiHKCI CYCGRG 1 cut(s) 188
BsiSI CCGG 7 cut(s) 32, 212, 363, 420, 441, 456, 483
BslI CCNNNNNNNGG 2 cut(s) 441, 892
BsmAI GTCTC 3 cut(s) 106, 575, 596
BsnI GGCC 6 cut(s) 215, 405, 434, 459, 477, 662
Bso31I GGTCTC 3 cut(s) 106, 575, 596
BsoBI CYCGRG 1 cut(s) 188
Bsp143I GATC 9 cut(s) 20, 198, 350, 444, 732, 841, 868, 880, 925
Bsp19I CCATGG 1 cut(s) 171
Bsp68I TCGCGA 1 cut(s) 846
BspANI GGCC 6 cut(s) 215, 405, 434, 459, 477, 662
BspCNI CTCAG 1 cut(s) 669
BspFNI CGCG 6 cut(s) 92, 132, 147, 185, 536, 846
BspLI GGNNCC 2 cut(s) 36, 487
BspMAI CTGCAG 1 cut(s) 944
BspMI ACCTGC 2 cut(s) 170, 947
BspPI GGATC 4 cut(s) 193, 452, 876, 888
BspT107I GGYRCC 1 cut(s) 485
BspTNI GGTCTC 3 cut(s) 106, 575, 596
BsrBI CCGCTC 2 cut(s) 409, 620
BsrFI RCCGGY 1 cut(s) 482
BsrI ACTGG 1 cut(s) 91
BssAI RCCGGY 1 cut(s) 482
BssECI CCNNGG 3 cut(s) 145, 171, 570
BssMI GATC 9 cut(s) 20, 198, 350, 444, 732, 841, 868, 880, 925
BssNI GRCGYC 2 cut(s) 249, 284
BssT1I CCWWGG 1 cut(s) 171
Bst2UI CCWGG 2 cut(s) 781, 887
Bst4CI ACNGT 4 cut(s) 16, 67, 490, 518
Bst6I CTCTTC 1 cut(s) 109
BstACI GRCGYC 2 cut(s) 249, 284
BstAPI GCANNNNNTGC 1 cut(s) 133
BstC8I GCNNGC 3 cut(s) 134, 407, 484
BstDEI CTNAG 1 cut(s) 677
BstDSI CCRYGG 3 cut(s) 145, 171, 570
BstF5I GGATG 3 cut(s) 181, 318, 705
BstFNI CGCG 6 cut(s) 92, 132, 147, 185, 536, 846
BstHHI GCGC 5 cut(s) 92, 132, 187, 812, 957
BstKTI GATC 9 cut(s) 23, 201, 353, 447, 735, 844, 871, 883, 928
BstMAI GTCTC 3 cut(s) 106, 575, 596
BstMBI GATC 9 cut(s) 20, 198, 350, 444, 732, 841, 868, 880, 925
BstMCI CGRYCG 2 cut(s) 460, 534
BstMWI GCNNNNNNNGC 7 cut(s) 127, 133, 138, 147, 176, 390, 483
BstNI CCWGG 2 cut(s) 781, 887
BstSCI CCNGG 3 cut(s) 440, 779, 885
BstSFI CTRYAG 1 cut(s) 940
BstUI CGCG 6 cut(s) 92, 132, 147, 185, 536, 846
BstV1I GCAGC 5 cut(s) 139, 153, 191, 286, 396
BstV2I GAAGAC 1 cut(s) 61
BstX2I RGATCY 4 cut(s) 198, 444, 880, 925
BstYI RGATCY 4 cut(s) 198, 444, 880, 925
BstZI CGGCCG 1 cut(s) 457
BsuRI GGCC 6 cut(s) 215, 405, 434, 459, 477, 662
BtgI CCRYGG 3 cut(s) 145, 171, 570
BtrI CACGTC 3 cut(s) 316, 430, 505
BtsCI GGATG 3 cut(s) 181, 318, 705
BtuMI TCGCGA 1 cut(s) 846
BveI ACCTGC 2 cut(s) 170, 947
Cac8I GCNNGC 3 cut(s) 134, 407, 484
CfoI GCGC 5 cut(s) 92, 132, 187, 812, 957
Cfr10I RCCGGY 1 cut(s) 482
Cfr13I GGNCC 2 cut(s) 404, 660
Cfr42I CCGCGG 1 cut(s) 148
CseI GACGC 3 cut(s) 81, 257, 273
Csp6I GTAC 4 cut(s) 115, 470, 511, 746
CviAII CATG 5 cut(s) 172, 194, 696, 736, 839
CviQI GTAC 4 cut(s) 115, 470, 511, 746
DdeI CTNAG 1 cut(s) 677
DpnI GATC 9 cut(s) 22, 200, 352, 446, 734, 843, 870, 882, 927
DpnII GATC 9 cut(s) 20, 198, 350, 444, 732, 841, 868, 880, 925
DrdI GACNNNNNNGTC 1 cut(s) 91
DseDI GACNNNNNNGTC 1 cut(s) 91
EaeI YGGCCR 3 cut(s) 213, 432, 457
EagI CGGCCG 1 cut(s) 457
Eam1104I CTCTTC 1 cut(s) 109
EarI CTCTTC 1 cut(s) 109
EciI GGCGGA 5 cut(s) 296, 317, 380, 593, 656
EclXI CGGCCG 1 cut(s) 457
Eco130I CCWWGG 1 cut(s) 171
Eco31I GGTCTC 3 cut(s) 106, 575, 596
Eco52I CGGCCG 1 cut(s) 457
Eco88I CYCGRG 1 cut(s) 188
EcoRII CCWGG 2 cut(s) 779, 885
EcoT14I CCWWGG 1 cut(s) 171
ErhI CCWWGG 1 cut(s) 171
FaeI CATG 5 cut(s) 175, 197, 699, 739, 842
FaiI YATR 8 cut(s) 173, 195, 552, 554, 697, 737, 840, 961
FatI CATG 5 cut(s) 171, 193, 695, 735, 838
FauI CCCGC 2 cut(s) 414, 748
FblI GTMKAC 1 cut(s) 426
FokI GGATG 3 cut(s) 188, 305, 712
GlaI GCGC 5 cut(s) 91, 131, 186, 811, 956
GsuI CTGGAG 1 cut(s) 869
HaeIII GGCC 6 cut(s) 215, 405, 434, 459, 477, 662
HapII CCGG 7 cut(s) 32, 212, 363, 420, 441, 456, 483
HgaI GACGC 3 cut(s) 81, 257, 273
HhaI GCGC 5 cut(s) 92, 132, 187, 812, 957
Hin1I GRCGYC 2 cut(s) 249, 284
Hin1II CATG 5 cut(s) 175, 197, 699, 739, 842
Hin6I GCGC 5 cut(s) 90, 130, 185, 810, 955
HinP1I GCGC 5 cut(s) 90, 130, 185, 810, 955
HincII GTYRAC 1 cut(s) 427
HindII GTYRAC 1 cut(s) 427
HpaII CCGG 7 cut(s) 32, 212, 363, 420, 441, 456, 483
HphI GGTGA 7 cut(s) 4, 55, 151, 220, 388, 536, 550
Hpy166II GTNNAC 7 cut(s) 12, 427, 472, 511, 541, 761, 934
Hpy188I TCNGA 9 cut(s) 20, 39, 109, 343, 350, 413, 649, 670, 827
Hpy188III TCNNGA 3 cut(s) 82, 202, 845
Hpy8I GTNNAC 7 cut(s) 12, 427, 472, 511, 541, 761, 934
Hpy99I CGWCG 6 cut(s) 97, 100, 113, 289, 431, 506
HpyAV CCTTC 2 cut(s) 235, 871
HpyCH4III ACNGT 4 cut(s) 16, 67, 490, 518
HpyCH4IV ACGT 3 cut(s) 315, 429, 504
HpyCH4V TGCA 5 cut(s) 127, 165, 179, 898, 942
HpyF10VI GCNNNNNNNGC 7 cut(s) 127, 133, 138, 147, 176, 390, 483
HpyF3I CTNAG 1 cut(s) 677
HpySE526I ACGT 3 cut(s) 315, 429, 504
Hsp92I GRCGYC 2 cut(s) 249, 284
Hsp92II CATG 5 cut(s) 175, 197, 699, 739, 842
HspAI GCGC 5 cut(s) 90, 130, 185, 810, 955
KroI GCCGGC 1 cut(s) 482
KroNI GCCGGC 1 cut(s) 484
KspI CCGCGG 1 cut(s) 148
Kzo9I GATC 9 cut(s) 20, 198, 350, 444, 732, 841, 868, 880, 925
LmnI GCTCC 4 cut(s) 244, 309, 414, 823
Lsp1109I GCAGC 5 cut(s) 139, 153, 191, 286, 396
LweI GCATC 2 cut(s) 114, 166
MaeII ACGT 3 cut(s) 315, 429, 504
MaeIII GTNAC 1 cut(s) 61
MalI GATC 9 cut(s) 22, 200, 352, 446, 734, 843, 870, 882, 927
MbiI CCGCTC 2 cut(s) 409, 620
MboI GATC 9 cut(s) 20, 198, 350, 444, 732, 841, 868, 880, 925
MboII GAAGA 6 cut(s) 61, 64, 96, 226, 439, 957
MfeI CAATTG 1 cut(s) 872
MflI RGATCY 4 cut(s) 198, 444, 880, 925
MluCI AATT 1 cut(s) 872
MlyI GAGTC 6 cut(s) 215, 423, 432, 653, 674, 756
MmeI TCCRAC 3 cut(s) 62, 132, 366
MroNI GCCGGC 1 cut(s) 482
MseI TTAA 1 cut(s) 834
MspA1I CMGCKG 1 cut(s) 147
MspI CCGG 7 cut(s) 32, 212, 363, 420, 441, 456, 483
MspR9I CCNGG 3 cut(s) 442, 781, 887
MunI CAATTG 1 cut(s) 872
MvaI CCWGG 2 cut(s) 781, 887
MvnI CGCG 6 cut(s) 92, 132, 147, 185, 536, 846
MwoI GCNNNNNNNGC 7 cut(s) 127, 133, 138, 147, 176, 390, 483
NaeI GCCGGC 1 cut(s) 484
NciI CCSGG 1 cut(s) 442
NcoI CCATGG 1 cut(s) 171
NdeII GATC 9 cut(s) 20, 198, 350, 444, 732, 841, 868, 880, 925
NgoMIV GCCGGC 1 cut(s) 482
NlaIII CATG 5 cut(s) 175, 197, 699, 739, 842
NlaIV GGNNCC 2 cut(s) 36, 487
NmeAIII GCCGAG 1 cut(s) 688
NmuCI GTSAC 1 cut(s) 61
NruI TCGCGA 1 cut(s) 846
PaeR7I CTCGAG 1 cut(s) 188
PaqCI CACCTGC 2 cut(s) 170, 947
PcsI WCGNNNNNNNCGW 4 cut(s) 63, 423, 432, 486
PdiI GCCGGC 1 cut(s) 484
PfeI GAWTC 5 cut(s) 299, 462, 493, 527, 948
PflMI CCANNNNNTGG 1 cut(s) 892
PleI GAGTC 6 cut(s) 215, 422, 431, 652, 673, 756
PpsI GAGTC 6 cut(s) 215, 422, 431, 652, 673, 756
Psp6I CCWGG 2 cut(s) 779, 885
PspGI CCWGG 2 cut(s) 779, 885
PspN4I GGNNCC 2 cut(s) 36, 487
PspPI GGNCC 2 cut(s) 404, 660
PspXI VCTCGAGB 1 cut(s) 188
PstI CTGCAG 1 cut(s) 944
PsuI RGATCY 4 cut(s) 198, 444, 880, 925
RruI TCGCGA 1 cut(s) 846
RsaI GTAC 4 cut(s) 116, 471, 512, 747
RsaNI GTAC 4 cut(s) 115, 470, 511, 746
SacII CCGCGG 1 cut(s) 148
SalI GTCGAC 1 cut(s) 425
SaqAI TTAA 1 cut(s) 834
Sau3AI GATC 9 cut(s) 20, 198, 350, 444, 732, 841, 868, 880, 925
Sau96I GGNCC 2 cut(s) 404, 660
SchI GAGTC 6 cut(s) 215, 423, 432, 653, 674, 756
ScrFI CCNGG 3 cut(s) 442, 781, 887
SfaNI GCATC 2 cut(s) 114, 166
SfcI CTRYAG 1 cut(s) 940
Sfr274I CTCGAG 1 cut(s) 188
Sfr303I CCGCGG 1 cut(s) 148
SgrBI CCGCGG 1 cut(s) 148
SlaI CTCGAG 1 cut(s) 188
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
Sse9I AATT 1 cut(s) 872
StyD4I CCNGG 3 cut(s) 440, 779, 885
StyI CCWWGG 1 cut(s) 171
TaaI ACNGT 4 cut(s) 16, 67, 490, 518
TaiI ACGT 3 cut(s) 318, 432, 507
TaqI TCGA 2 cut(s) 189, 426
TaqII GACCGA 4 cut(s) 88, 520, 599, 620
TasI AATT 1 cut(s) 872
TatI WGTACW 1 cut(s) 510
TauI GCSGC 5 cut(s) 8, 147, 150, 185, 578
TfiI GAWTC 5 cut(s) 299, 462, 493, 527, 948
Tru1I TTAA 1 cut(s) 834
Tru9I TTAA 1 cut(s) 834
TseFI GTSAC 1 cut(s) 61
TseI GCWGC 5 cut(s) 127, 141, 179, 274, 384
Tsp45I GTSAC 1 cut(s) 61
Van91I CCANNNNNTGG 1 cut(s) 892
XhoI CTCGAG 1 cut(s) 188
XmiI GTMKAC 1 cut(s) 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.