Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0008590

Physical Location & Seq

Genomic Coordinates Reverse (-)

23230522 .. 23232438

Gene Structure 1917 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00236010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGTCGGCGAGGCCAAGGCCAGCTAAGATACCGGGGCCGCCGCCGGACGAGAGATTTGCACTTTGGCCGCCGCCGAGTTTGGGTTTCTCTCAAAGGAAGAGAGAGAAACCTAGTTTTGGAGGTTGCCTCTTTCGCGTGCTCCGCAACCACGGCTACAATCTGATCTGCAACGCCATGGCCACCTCTGACCTCCAGTACGAGCTTCTCACGCTCCCGCCCAACGCCTCCTTCACCGTCTTCGCTCCCACCGACGCCTCCCTCTTCGCGCTCGACATGATCCAAACGGCGTCGTATTACATCGACACCCTCCGCGTCCACGTCGTCCCTCTCCGCTTCTCTGTCTCCGACCTCCGATCTATCTCCTCCGGCTCCATCCTCCCCACGCTCCTCCCCTACAGAGCTCTCCGCCTCTCCACAGACCCCCTCGCCGTCTCCGGTGTCGACGTCGTTTTGCCCGGCCTTTTCTACTCTCGCCGCGTCGCCGTCCACGGCCTCGGAGGCATCGTCAGTCTCAGCTCTGTCGTTCCCTACGGTTCTCATCTTCAGGCCAGTGCTCCCGTCGCAAGCGGAGGCGCCGATAAGGTCGCGCCCTTGAAAACTGTGTCCAACCGCACAGATCTCTCTCCGGCGGCCACACCACCGTCCGAAGCCGTGTCGCTCATGAATGCTCATTCCAACGGGACGGCCAGAGCTGATCTTTCTCCGGTTGTAGCTGAGTCGCCGGTGACCACTGCATCTCCATCTCCGCCGACTGGAGTAGACGATAACTCGACGGCTTCCGAAGATACTCCCTCGGCATCTCCACCGTCACCGTCGGCCGATTCAGTACCGGAAAGAGCTAGGGCTTTGTTGATGGAGATTTCAGACTGCAATTCCGACTCCGAGGGTGATGAAATTTCTGAGAAATCGCCACTGCTGATGGAAGCGCAAGCGGTTGGTGAGGTGAAGAAATGTGGAGCGTTGGATGAGATGACCATTGACTGCTTTGTGGCTGAAGACGGGGATGGACTAGAAAAGCTCAGCCTTCAGCGTCTGGTTCGAGCTTTGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

350

Amino Acids

36.89

Weight (kDa)

5.12

Isoelectric Point (pI)

52.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008590)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15190
fragaria_vesca	FvH4_2g02380 FvH4_2g02450 FvH4_2g04910 FvH4_3g08610 FvH4_4g13350 FvH4_4g36540 FvH4_4g36551 FvH4_5g29740
malus_domestica	MD15G1420000.v1.1
prunus_persica	Prupe.1G566000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0223241 RchiOBHm_Chr7g0223251
rosa_laevigata	RLG00000001997
rosa_multiflora	Rmu_co8206110.1_g000001 Rmu_sc0002192.1_g000007 Rmu_sc0009034.1_g000005
rosa_roxburghii	Rroxscaffold_3G00236010
rosa_rugosa	Rorug07G0213800
rosa_samantha	Rh1AG061200 Rh2CG525600 Rh7DG354200
rosa_wichuraiana	Rw7G030520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	447
AccB1I	GGYRCC	1 cut(s)	572
AccI	GTMKAC	2 cut(s)	441, 759
AccII	CGCG	5 cut(s)	135, 266, 312, 477, 587
AclWI	GGATC	1 cut(s)	271
AcoI	YGGCCR	5 cut(s)	65, 177, 630, 684, 816
AcsI	RAATTY	1 cut(s)	894
AcuI	CTGAAG	3 cut(s)	527, 1010, 1014
AcyI	GRCGYC	4 cut(s)	252, 287, 444, 573
AfaI	GTAC	2 cut(s)	197, 828
AfiI	CCNNNNNNNGG	3 cut(s)	80, 116, 752
AgsI	TTSAA	1 cut(s)	595
AjiI	CACGTC	1 cut(s)	319
AjuI	GAANNNNNNNTTGG	2 cut(s)	212, 244
AluBI	AGCT	9 cut(s)	23, 202, 401, 516, 692, 713, 839, 1018, 1043
AluI	AGCT	9 cut(s)	23, 202, 401, 516, 692, 713, 839, 1018, 1043
Alw21I	GWGCWC	3 cut(s)	141, 403, 556
Alw26I	GTCTC	3 cut(s)	346, 436, 515
AlwI	GGATC	1 cut(s)	271
AlwNI	CAGNNNCTG	1 cut(s)	1033
ApoI	RAATTY	1 cut(s)	894
ArsI	GACNNNNNNTTYG	2 cut(s)	38, 70
AspLEI	GCGC	4 cut(s)	268, 575, 589, 928
AspS9I	GGNCC	1 cut(s)	35
AsuC2I	CCSGG	2 cut(s)	33, 456
AsuHPI	GGTGA	6 cut(s)	223, 736, 801, 899, 950, 955
BalI	TGGCCA	1 cut(s)	179
BanI	GGYRCC	1 cut(s)	572
BanII	GRGCYC	1 cut(s)	403
BbsI	GAAGAC	2 cut(s)	229, 1002
Bbv12I	GWGCWC	3 cut(s)	141, 403, 556
BccI	CCATC	5 cut(s)	380, 748, 847, 913, 998
BceAI	ACGGC	8 cut(s)	166, 300, 413, 467, 505, 635, 699, 789
BcgI	CGANNNNNNTGC	2 cut(s)	38, 72
BcnI	CCSGG	2 cut(s)	33, 456
BcoDI	GTCTC	3 cut(s)	346, 436, 515
BfaI	CTAG	3 cut(s)	111, 840, 1010
BfmI	CTRYAG	1 cut(s)	394
BfoI	RGCGCY	1 cut(s)	576
BglI	GCCNNNNNGGC	1 cut(s)	498
BglII	AGATCT	1 cut(s)	616
BisI	GCNGC	6 cut(s)	38, 41, 68, 71, 475, 630
BlpI	GCTNAGC	1 cut(s)	1019
BlsI	GCNGC	6 cut(s)	39, 42, 69, 72, 476, 631
Bme1390I	CCNGG	2 cut(s)	33, 456
BmgBI	CACGTC	1 cut(s)	319
BmgT120I	GGNCC	1 cut(s)	35
BmiI	GGNNCC	3 cut(s)	36, 370, 574
BmrFI	CCNGG	2 cut(s)	33, 456
BmsI	GCATC	3 cut(s)	510, 743, 806
BpiI	GAAGAC	2 cut(s)	229, 1002
BplI	GAGNNNNNCTC	2 cut(s)	111, 143
BpmI	CTGGAG	2 cut(s)	176, 774
Bpu1102I	GCTNAGC	1 cut(s)	1019
BpuMI	CCSGG	2 cut(s)	33, 456
BsaHI	GRCGYC	4 cut(s)	252, 287, 444, 573
BsaJI	CCNNGG	8 cut(s)	14, 32, 148, 174, 487, 493, 792, 882
BsaWI	WCCGGW	3 cut(s)	434, 703, 829
BsaXI	ACNNNNNCTCC	4 cut(s)	489, 519, 721, 751
Bsc4I	CCNNNNNNNGG	3 cut(s)	80, 116, 752
Bse118I	RCCGGY	1 cut(s)	721
Bse1I	ACTGG	3 cut(s)	193, 549, 757
BseDI	CCNNGG	8 cut(s)	14, 32, 148, 174, 487, 493, 792, 882
BseGI	GGATG	3 cut(s)	372, 970, 1009
BseLI	CCNNNNNNNGG	3 cut(s)	80, 116, 752
BseMII	CTCAG	4 cut(s)	526, 705, 891, 1033
BseNI	ACTGG	3 cut(s)	193, 549, 757
BseRI	GAGGAG	2 cut(s)	352, 377
BseX3I	CGGCCG	1 cut(s)	816
Bsh1236I	CGCG	5 cut(s)	135, 266, 312, 477, 587
Bsh1285I	CGRYCG	1 cut(s)	819
BshNI	GGYRCC	1 cut(s)	572
BsiEI	CGRYCG	1 cut(s)	819
BsiHKAI	GWGCWC	3 cut(s)	141, 403, 556
BsiSI	CCGG	9 cut(s)	32, 44, 366, 435, 456, 626, 704, 722, 830
BslFI	GGGAC	2 cut(s)	308, 694
BslI	CCNNNNNNNGG	3 cut(s)	80, 116, 752
BsmAI	GTCTC	3 cut(s)	346, 436, 515
BsmBI	CGTCTC	1 cut(s)	436
BsmFI	GGGAC	2 cut(s)	308, 694
BsmI	GAATGC	1 cut(s)	670
Bsp1286I	GDGCHC	3 cut(s)	141, 403, 556
Bsp143I	GATC	5 cut(s)	162, 276, 353, 616, 694
Bsp1720I	GCTNAGC	1 cut(s)	1019
Bsp19I	CCATGG	1 cut(s)	174
BspCNI	CTCAG	4 cut(s)	525, 706, 892, 1032
BspFNI	CGCG	5 cut(s)	135, 266, 312, 477, 587
BspHI	TCATGA	1 cut(s)	660
BspLI	GGNNCC	3 cut(s)	36, 370, 574
BspPI	GGATC	1 cut(s)	271
BspT107I	GGYRCC	1 cut(s)	572
BsrFI	RCCGGY	1 cut(s)	721
BsrI	ACTGG	3 cut(s)	193, 549, 757
BssAI	RCCGGY	1 cut(s)	721
BssECI	CCNNGG	8 cut(s)	14, 32, 148, 174, 487, 493, 792, 882
BssMI	GATC	5 cut(s)	162, 276, 353, 616, 694
BssNI	GRCGYC	4 cut(s)	252, 287, 444, 573
BssT1I	CCWWGG	2 cut(s)	14, 174
Bst4CI	ACNGT	6 cut(s)	235, 533, 601, 642, 807, 813
Bst6I	CTCTTC	2 cut(s)	92, 266
BstACI	GRCGYC	4 cut(s)	252, 287, 444, 573
BstC8I	GCNNGC	4 cut(s)	21, 137, 565, 930
BstDEI	CTNAG	5 cut(s)	24, 512, 714, 900, 1019
BstDSI	CCRYGG	3 cut(s)	148, 174, 487
BstEII	GGTNACC	1 cut(s)	724
BstF5I	GGATG	3 cut(s)	372, 970, 1009
BstFNI	CGCG	5 cut(s)	135, 266, 312, 477, 587
BstH2I	RGCGCY	1 cut(s)	576
BstHHI	GCGC	4 cut(s)	268, 575, 589, 928
BstKTI	GATC	5 cut(s)	165, 279, 356, 619, 697
BstMAI	GTCTC	3 cut(s)	346, 436, 515
BstMBI	GATC	5 cut(s)	162, 276, 353, 616, 694
BstMCI	CGRYCG	1 cut(s)	819
BstMWI	GCNNNNNNNGC	6 cut(s)	132, 141, 150, 208, 498, 560
BstPI	GGTNACC	1 cut(s)	724
BstSCI	CCNGG	2 cut(s)	31, 454
BstSFI	CTRYAG	1 cut(s)	394
BstUI	CGCG	5 cut(s)	135, 266, 312, 477, 587
BstV2I	GAAGAC	2 cut(s)	229, 1002
BstX2I	RGATCY	1 cut(s)	616
BstYI	RGATCY	1 cut(s)	616
BstZI	CGGCCG	1 cut(s)	816
BtgI	CCRYGG	3 cut(s)	148, 174, 487
BtrI	CACGTC	1 cut(s)	319
BtsCI	GGATG	3 cut(s)	372, 970, 1009
BtsI	GCAGTG	2 cut(s)	729, 911
BtsIMutI	CAGTG	3 cut(s)	556, 729, 911
Cac8I	GCNNGC	4 cut(s)	21, 137, 565, 930
CaiI	CAGNNNCTG	1 cut(s)	1033
CciI	TCATGA	1 cut(s)	660
CfoI	GCGC	4 cut(s)	268, 575, 589, 928
Cfr10I	RCCGGY	1 cut(s)	721
Cfr13I	GGNCC	1 cut(s)	35
CseI	GACGC	5 cut(s)	260, 276, 301, 466, 1019
Csp6I	GTAC	2 cut(s)	196, 827
CviAII	CATG	3 cut(s)	175, 274, 661
CviQI	GTAC	2 cut(s)	196, 827
DdeI	CTNAG	5 cut(s)	24, 512, 714, 900, 1019
DinI	GGCGCC	1 cut(s)	574
DpnI	GATC	5 cut(s)	164, 278, 355, 618, 696
DpnII	GATC	5 cut(s)	162, 276, 353, 616, 694
EaeI	YGGCCR	5 cut(s)	65, 177, 630, 684, 816
EagI	CGGCCG	1 cut(s)	816
Eam1104I	CTCTTC	2 cut(s)	92, 266
EarI	CTCTTC	2 cut(s)	92, 266
EciI	GGCGGA	2 cut(s)	395, 735
Ecl136II	GAGCTC	1 cut(s)	401
EclXI	CGGCCG	1 cut(s)	816
Eco130I	CCWWGG	2 cut(s)	14, 174
Eco24I	GRGCYC	1 cut(s)	403
Eco52I	CGGCCG	1 cut(s)	816
Eco53kI	GAGCTC	1 cut(s)	401
Eco57I	CTGAAG	3 cut(s)	527, 1010, 1014
Eco91I	GGTNACC	1 cut(s)	724
EcoICRI	GAGCTC	1 cut(s)	401
EcoO65I	GGTNACC	1 cut(s)	724
EcoT14I	CCWWGG	2 cut(s)	14, 174
EcoT38I	GRGCYC	1 cut(s)	403
EgeI	GGCGCC	1 cut(s)	574
EheI	GGCGCC	1 cut(s)	574
ErhI	CCWWGG	2 cut(s)	14, 174
Esp3I	CGTCTC	1 cut(s)	436
FaeI	CATG	3 cut(s)	178, 277, 664
FaiI	YATR	3 cut(s)	176, 275, 662
FaqI	GGGAC	2 cut(s)	308, 694
FatI	CATG	3 cut(s)	174, 273, 660
FauI	CCCGC	1 cut(s)	222
FblI	GTMKAC	2 cut(s)	441, 759
Fnu4HI	GCNGC	6 cut(s)	38, 41, 68, 71, 475, 630
FokI	GGATG	3 cut(s)	359, 977, 1016
FriOI	GRGCYC	1 cut(s)	403
Fsp4HI	GCNGC	6 cut(s)	38, 41, 68, 71, 475, 630
FspBI	CTAG	3 cut(s)	111, 840, 1010
GlaI	GCGC	4 cut(s)	267, 574, 588, 927
GluI	GCNGC	6 cut(s)	38, 41, 68, 71, 475, 630
GsuI	CTGGAG	2 cut(s)	176, 774
HaeII	RGCGCY	1 cut(s)	576
HapII	CCGG	9 cut(s)	32, 44, 366, 435, 456, 626, 704, 722, 830
HgaI	GACGC	5 cut(s)	260, 276, 301, 466, 1019
HhaI	GCGC	4 cut(s)	268, 575, 589, 928
Hin1I	GRCGYC	4 cut(s)	252, 287, 444, 573
Hin1II	CATG	3 cut(s)	178, 277, 664
Hin6I	GCGC	4 cut(s)	266, 573, 587, 926
HinP1I	GCGC	4 cut(s)	266, 573, 587, 926
HincII	GTYRAC	1 cut(s)	442
HindII	GTYRAC	1 cut(s)	442
HinfI	GANTC	3 cut(s)	716, 821, 878
HpaII	CCGG	9 cut(s)	32, 44, 366, 435, 456, 626, 704, 722, 830
HphI	GGTGA	6 cut(s)	223, 736, 801, 899, 950, 955
Hpy166II	GTNNAC	4 cut(s)	316, 442, 487, 760
Hpy188III	TCNNGA	1 cut(s)	661
Hpy8I	GTNNAC	4 cut(s)	316, 442, 487, 760
Hpy99I	CGWCG	9 cut(s)	254, 292, 323, 446, 449, 482, 563, 775, 817
HpyAV	CCTTC	2 cut(s)	238, 1034
HpyCH4III	ACNGT	6 cut(s)	235, 533, 601, 642, 807, 813
HpyCH4IV	ACGT	2 cut(s)	318, 444
HpyCH4V	TGCA	4 cut(s)	59, 168, 734, 870
HpyF10VI	GCNNNNNNNGC	6 cut(s)	132, 141, 150, 208, 498, 560
HpyF3I	CTNAG	5 cut(s)	24, 512, 714, 900, 1019
HpySE526I	ACGT	2 cut(s)	318, 444
Hsp92I	GRCGYC	4 cut(s)	252, 287, 444, 573
Hsp92II	CATG	3 cut(s)	178, 277, 664
HspAI	GCGC	4 cut(s)	266, 573, 587, 926
KasI	GGCGCC	1 cut(s)	572
Kzo9I	GATC	5 cut(s)	162, 276, 353, 616, 694
LmnI	GCTCC	7 cut(s)	144, 216, 247, 374, 390, 559, 956
LweI	GCATC	3 cut(s)	510, 743, 806
MaeI	CTAG	3 cut(s)	111, 840, 1010
MaeII	ACGT	2 cut(s)	318, 444
MaeIII	GTNAC	2 cut(s)	724, 807
MalI	GATC	5 cut(s)	164, 278, 355, 618, 696
MboI	GATC	5 cut(s)	162, 276, 353, 616, 694
MboII	GAAGA	7 cut(s)	109, 229, 253, 533, 794, 958, 1007
MflI	RGATCY	1 cut(s)	616
MhlI	GDGCHC	3 cut(s)	141, 403, 556
MlsI	TGGCCA	1 cut(s)	179
MluCI	AATT	2 cut(s)	871, 894
MluNI	TGGCCA	1 cut(s)	179
Mly113I	GGCGCC	1 cut(s)	573
MlyI	GAGTC	2 cut(s)	725, 872
MmeI	TCCRAC	5 cut(s)	369, 630, 699, 900, 942
Mox20I	TGGCCA	1 cut(s)	179
MscI	TGGCCA	1 cut(s)	179
MseI	TTAA	1 cut(s)	1051
Msp20I	TGGCCA	1 cut(s)	179
MspI	CCGG	9 cut(s)	32, 44, 366, 435, 456, 626, 704, 722, 830
MspR9I	CCNGG	2 cut(s)	33, 456
Mva1269I	GAATGC	1 cut(s)	670
MvnI	CGCG	5 cut(s)	135, 266, 312, 477, 587
MwoI	GCNNNNNNNGC	6 cut(s)	132, 141, 150, 208, 498, 560
NarI	GGCGCC	1 cut(s)	573
NciI	CCSGG	2 cut(s)	33, 456
NcoI	CCATGG	1 cut(s)	174
NdeII	GATC	5 cut(s)	162, 276, 353, 616, 694
NlaIII	CATG	3 cut(s)	178, 277, 664
NlaIV	GGNNCC	3 cut(s)	36, 370, 574
NmeAIII	GCCGAG	2 cut(s)	99, 773
NmuCI	GTSAC	2 cut(s)	724, 807
PagI	TCATGA	1 cut(s)	660
PcsI	WCGNNNNNNNCGW	2 cut(s)	246, 501
PctI	GAATGC	1 cut(s)	670
PfeI	GAWTC	1 cut(s)	821
PkrI	GCNGC	6 cut(s)	39, 42, 69, 72, 476, 631
PleI	GAGTC	2 cut(s)	724, 872
PluTI	GGCGCC	1 cut(s)	576
PpsI	GAGTC	2 cut(s)	724, 872
Psp124BI	GAGCTC	1 cut(s)	403
PspEI	GGTNACC	1 cut(s)	724
PspN4I	GGNNCC	3 cut(s)	36, 370, 574
PspPI	GGNCC	1 cut(s)	35
PstNI	CAGNNNCTG	1 cut(s)	1033
PsuI	RGATCY	1 cut(s)	616
RsaI	GTAC	2 cut(s)	197, 828
RsaNI	GTAC	2 cut(s)	196, 827
SacI	GAGCTC	1 cut(s)	403
SalI	GTCGAC	1 cut(s)	440
SaqAI	TTAA	1 cut(s)	1051
SatI	GCNGC	6 cut(s)	38, 41, 68, 71, 475, 630
Sau3AI	GATC	5 cut(s)	162, 276, 353, 616, 694
Sau96I	GGNCC	1 cut(s)	35
SchI	GAGTC	2 cut(s)	725, 872
ScrFI	CCNGG	2 cut(s)	33, 456
SduI	GDGCHC	3 cut(s)	141, 403, 556
SfaNI	GCATC	3 cut(s)	510, 743, 806
SfcI	CTRYAG	1 cut(s)	394
SfoI	GGCGCC	1 cut(s)	574
SgrAI	CRCCGGYG	1 cut(s)	721
Sse9I	AATT	2 cut(s)	871, 894
SspDI	GGCGCC	1 cut(s)	572
SspMI	CTAG	3 cut(s)	111, 840, 1010
SstI	GAGCTC	1 cut(s)	403
StyD4I	CCNGG	2 cut(s)	31, 454
StyI	CCWWGG	2 cut(s)	14, 174
TaaI	ACNGT	6 cut(s)	235, 533, 601, 642, 807, 813
TaiI	ACGT	2 cut(s)	321, 447
TaqI	TCGA	5 cut(s)	270, 300, 441, 770, 1039
TasI	AATT	2 cut(s)	871, 894
TauI	GCSGC	6 cut(s)	40, 43, 70, 73, 477, 632
TfiI	GAWTC	1 cut(s)	821
Tru1I	TTAA	1 cut(s)	1051
Tru9I	TTAA	1 cut(s)	1051
TscAI	CASTG	3 cut(s)	556, 736, 918
TseFI	GTSAC	2 cut(s)	724, 807
Tsp45I	GTSAC	2 cut(s)	724, 807
TspDTI	ATGAA	2 cut(s)	677, 906
TspRI	CASTG	3 cut(s)	556, 736, 918
XapI	RAATTY	1 cut(s)	894
XmiI	GTMKAC	2 cut(s)	441, 759
XspI	CTAG	3 cut(s)	111, 840, 1010
ZraI	GACGTC	1 cut(s)	445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.