MD15G1420000.v1.1

Fasciclin-like arabinogalactan protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
52150970 .. 52152016
1047 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1420000.v1.1.491

Sequence Viewer

Length: 1047 bp
ATGGCTTCCAGCGTCCGTACAATCTCCCTCGCCGCCGTCCTCCTCCTTCTTGCTCTCATCTCCTCCCCGAGCGGCGTCGTTTCACTCACTACCCGCGAGTACGAGTCGATGCAGCGAGTGCTCCGCGGCCACGGATACAACCTCATCTGCAACGCCATGGCCACCTCCGACCTCCAGTGGCTTCTCCTCACCCTCCCCGCCAACGCCTCCTTCACCATCTTCGCCCCCACCGACGCCTCCCTCTTCGCCCTCGACATGACGCTCCCCGCTTCCTCATACACCGACACCCTCCGCTTCCACGTCGTCCCTCTCCGCCTCTCCCTCTCCAACCTCCGCTCCCTCGCCTCCGGCTCGGTCCTCCCCACTCTCCTCCCCTCCAGCGCTCTCCGCCTCGTCTCCACCCGCCCTCTCTCAGTCGGCGGAGTCGACGTTGTTTTGCCCGGCCTCTTCTACTCCCGCCACGTCGCGGTCCACGGCCTCGGAGGCATCGTCAGCCTCGCCTCTCTCGTTCCCTACAGTTCCCCCTCTCCGGTTCCCATGGCCACTACTGGTGATTCCAACCGTACTGATTCTCCGGTTCCCAAGGTCGAGCCCATGGTCACTACTGATGATTCAAACCGTACGGATCTCAATCTCTCTCCTGGCATCGCACCGTCTCCGGTGACTACTGGATCTCCGTCTTCGTCTCCCACTGTAGGCCACGAGATCTCGCCGGCTTCCGTACCAGAGGACGAAATTTCTCCGGCGGCGGCGACGGCACCGGTACAATCGCCTTTAACGGCCGATTCCGTGGCGGAGAGGGCTAGGGTTCTGTTGATGGAGATCAATGGAATTTCAGATCGTGAGAAATCGAAAGCGATCTCCGACGTCGATCAGATCTTGGCCGGCGAGTCTCAACCGTCAATGATGAAGGAGCAACCGGAGGTTGGCAATAAGCTGGAGAAATGCGGAGCGTTGGATGAGATGGCCATCGACTGCTTCGTGCCAGACGGCGTGACGGGGTTGGATCACAGCAGCGTTCACCGCGTCGTTCGCGTTCTGACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

349

Amino Acids

36.5

Weight (kDa)

5.13

Isoelectric Point (pI)

56.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 870
AccB1I GGYRCC 1 cut(s) 757
AccBSI CCGCTC 2 cut(s) 72, 336
AccI GTMKAC 1 cut(s) 426
AccII CGCG 5 cut(s) 96, 126, 467, 1026, 1035
AclWI GGATC 3 cut(s) 633, 679, 1014
AcoI YGGCCR 6 cut(s) 127, 159, 540, 780, 882, 966
AcsI RAATTY 2 cut(s) 735, 831
AcyI GRCGYC 3 cut(s) 75, 234, 867
AfaI GTAC 6 cut(s) 19, 101, 565, 622, 723, 765
AfeI AGCGCT 1 cut(s) 382
AfiI CCNNNNNNNGG 4 cut(s) 466, 529, 695, 926
AgeI ACCGGT 1 cut(s) 760
AgsI TTSAA 1 cut(s) 615
AjiI CACGTC 2 cut(s) 301, 463
AjnI CCWGG 1 cut(s) 640
AjuI GAANNNNNNNTTGG 2 cut(s) 194, 226
AluBI AGCT 1 cut(s) 937
AluI AGCT 1 cut(s) 937
Alw21I GWGCWC 1 cut(s) 123
Alw26I GTCTC 4 cut(s) 400, 660, 690, 897
AlwI GGATC 3 cut(s) 633, 679, 1014
Ama87I CYCGRG 1 cut(s) 67
Aor51HI AGCGCT 1 cut(s) 382
AoxI GGCC 9 cut(s) 127, 159, 442, 475, 540, 697, 780, 882, 966
ApeKI GCWGC 2 cut(s) 112, 1014
ApoI RAATTY 2 cut(s) 735, 831
AsiGI ACCGGT 1 cut(s) 760
AspLEI GCGC 1 cut(s) 383
AspS9I GGNCC 2 cut(s) 355, 469
AsuC2I CCSGG 1 cut(s) 441
AsuHPI GGTGA 5 cut(s) 181, 205, 563, 673, 1013
AvaI CYCGRG 1 cut(s) 67
AvaII GGWCC 2 cut(s) 355, 469
BalI TGGCCA 3 cut(s) 161, 542, 968
BanI GGYRCC 1 cut(s) 757
BanII GRGCYC 1 cut(s) 594
BauI CACGAG 1 cut(s) 701
BbsI GAAGAC 1 cut(s) 672
Bbv12I GWGCWC 1 cut(s) 123
BbvI GCAGC 2 cut(s) 124, 1026
BccI CCATC 4 cut(s) 224, 811, 958, 977
BceAI ACGGC 5 cut(s) 20, 490, 771, 795, 1006
BciT130I CCWGG 1 cut(s) 642
BciVI GTATCC 1 cut(s) 128
BcnI CCSGG 1 cut(s) 441
BcoDI GTCTC 4 cut(s) 400, 660, 690, 897
BfaI CTAG 1 cut(s) 804
BfmI CTRYAG 2 cut(s) 514, 693
BfoI RGCGCY 1 cut(s) 384
BfuI GTATCC 1 cut(s) 128
BglI GCCNNNNNGGC 1 cut(s) 483
BglII AGATCT 2 cut(s) 705, 876
BisI GCNGC 7 cut(s) 33, 73, 113, 127, 747, 750, 1015
BlsI GCNGC 7 cut(s) 34, 74, 114, 128, 748, 751, 1016
Bme1390I CCNGG 2 cut(s) 441, 642
Bme18I GGWCC 2 cut(s) 355, 469
BmeT110I CYCGRG 1 cut(s) 67
BmgBI CACGTC 2 cut(s) 301, 463
BmgT120I GGNCC 2 cut(s) 355, 469
BmiI GGNNCC 3 cut(s) 534, 579, 759
BmrFI CCNGG 2 cut(s) 441, 642
BmsI GCATC 3 cut(s) 99, 495, 654
BpiI GAAGAC 1 cut(s) 672
BpmI CTGGAG 3 cut(s) 158, 361, 959
BpuMI CCSGG 1 cut(s) 441
BsaBI GATNNNNATC 3 cut(s) 630, 821, 968
BsaHI GRCGYC 3 cut(s) 75, 234, 867
BsaJI CCNNGG 9 cut(s) 124, 130, 156, 472, 478, 537, 582, 594, 789
BsaWI WCCGGW 5 cut(s) 529, 574, 658, 760, 919
Bsc4I CCNNNNNNNGG 4 cut(s) 466, 529, 695, 926
Bse118I RCCGGY 3 cut(s) 712, 760, 884
Bse1I ACTGG 3 cut(s) 175, 553, 673
Bse8I GATNNNNATC 3 cut(s) 630, 821, 968
BseBI CCWGG 1 cut(s) 642
BseDI CCNNGG 9 cut(s) 124, 130, 156, 472, 478, 537, 582, 594, 789
BseGI GGATG 1 cut(s) 964
BseJI GATNNNNATC 3 cut(s) 630, 821, 968
BseLI CCNNNNNNNGG 4 cut(s) 466, 529, 695, 926
BseMII CTCAG 1 cut(s) 426
BseNI ACTGG 3 cut(s) 175, 553, 673
BseRI GAGGAG 4 cut(s) 32, 52, 176, 359
BseX3I CGGCCG 1 cut(s) 780
BseXI GCAGC 2 cut(s) 124, 1026
Bsh1236I CGCG 5 cut(s) 96, 126, 467, 1026, 1035
Bsh1285I CGRYCG 1 cut(s) 783
BshFI GGCC 9 cut(s) 129, 161, 444, 477, 542, 699, 782, 884, 968
BshNI GGYRCC 1 cut(s) 757
BshTI ACCGGT 1 cut(s) 760
BsiEI CGRYCG 1 cut(s) 783
BsiHKAI GWGCWC 1 cut(s) 123
BsiHKCI CYCGRG 1 cut(s) 67
BsiWI CGTACG 1 cut(s) 620
BslFI GGGAC 1 cut(s) 290
BslI CCNNNNNNNGG 4 cut(s) 466, 529, 695, 926
BsmAI GTCTC 4 cut(s) 400, 660, 690, 897
BsmBI CGTCTC 3 cut(s) 400, 660, 690
BsmFI GGGAC 1 cut(s) 290
BsnI GGCC 9 cut(s) 129, 161, 444, 477, 542, 699, 782, 884, 968
BsoBI CYCGRG 1 cut(s) 67
Bsp1286I GDGCHC 2 cut(s) 123, 594
Bsp143I GATC 9 cut(s) 625, 671, 705, 822, 838, 858, 871, 876, 1006
Bsp19I CCATGG 3 cut(s) 156, 537, 594
BspANI GGCC 9 cut(s) 129, 161, 444, 477, 542, 699, 782, 884, 968
BspCNI CTCAG 1 cut(s) 425
BspFNI CGCG 5 cut(s) 96, 126, 467, 1026, 1035
BspLI GGNNCC 3 cut(s) 534, 579, 759
BspPI GGATC 3 cut(s) 633, 679, 1014
BspT107I GGYRCC 1 cut(s) 757
BsrBI CCGCTC 2 cut(s) 72, 336
BsrFI RCCGGY 3 cut(s) 712, 760, 884
BsrI ACTGG 3 cut(s) 175, 553, 673
BssAI RCCGGY 3 cut(s) 712, 760, 884
BssECI CCNNGG 9 cut(s) 124, 130, 156, 472, 478, 537, 582, 594, 789
BssMI GATC 9 cut(s) 625, 671, 705, 822, 838, 858, 871, 876, 1006
BssNI GRCGYC 3 cut(s) 75, 234, 867
BssSI CACGAG 1 cut(s) 701
BssT1I CCWWGG 4 cut(s) 156, 537, 582, 594
Bst2BI CACGAG 1 cut(s) 701
Bst2UI CCWGG 1 cut(s) 642
Bst4CI ACNGT 6 cut(s) 518, 563, 620, 654, 694, 900
Bst6I CTCTTC 2 cut(s) 248, 452
BstACI GRCGYC 3 cut(s) 75, 234, 867
BstAPI GCANNNNNTGC 1 cut(s) 118
BstC8I GCNNGC 2 cut(s) 714, 886
BstDEI CTNAG 1 cut(s) 412
BstDSI CCRYGG 7 cut(s) 124, 130, 156, 472, 537, 594, 789
BstF5I GGATG 1 cut(s) 964
BstFNI CGCG 5 cut(s) 96, 126, 467, 1026, 1035
BstH2I RGCGCY 1 cut(s) 384
BstHHI GCGC 1 cut(s) 383
BstKTI GATC 9 cut(s) 628, 674, 708, 825, 841, 861, 874, 879, 1009
BstMAI GTCTC 4 cut(s) 400, 660, 690, 897
BstMBI GATC 9 cut(s) 625, 671, 705, 822, 838, 858, 871, 876, 1006
BstMCI CGRYCG 1 cut(s) 783
BstMWI GCNNNNNNNGC 8 cut(s) 118, 387, 483, 492, 755, 800, 1023, 1032
BstNI CCWGG 1 cut(s) 642
BstSCI CCNGG 2 cut(s) 439, 640
BstSFI CTRYAG 2 cut(s) 514, 693
BstUI CGCG 5 cut(s) 96, 126, 467, 1026, 1035
BstV1I GCAGC 2 cut(s) 124, 1026
BstV2I GAAGAC 1 cut(s) 672
BstX2I RGATCY 4 cut(s) 625, 671, 705, 876
BstYI RGATCY 4 cut(s) 625, 671, 705, 876
BstZI CGGCCG 1 cut(s) 780
BsuI GTATCC 1 cut(s) 128
BsuRI GGCC 9 cut(s) 129, 161, 444, 477, 542, 699, 782, 884, 968
BtgI CCRYGG 7 cut(s) 124, 130, 156, 472, 537, 594, 789
BtgZI GCGATG 1 cut(s) 631
BtrI CACGTC 2 cut(s) 301, 463
BtsCI GGATG 1 cut(s) 964
BtsIMutI CAGTG 2 cut(s) 182, 690
Cac8I GCNNGC 2 cut(s) 714, 886
CfoI GCGC 1 cut(s) 383
Cfr10I RCCGGY 3 cut(s) 712, 760, 884
Cfr13I GGNCC 2 cut(s) 355, 469
Cfr42I CCGCGG 1 cut(s) 127
CseI GACGC 4 cut(s) 64, 242, 268, 1015
Csp6I GTAC 6 cut(s) 18, 100, 564, 621, 722, 764
CspAI ACCGGT 1 cut(s) 760
CviAII CATG 4 cut(s) 157, 256, 538, 595
CviQI GTAC 6 cut(s) 18, 100, 564, 621, 722, 764
DdeI CTNAG 1 cut(s) 412
DpnI GATC 9 cut(s) 627, 673, 707, 824, 840, 860, 873, 878, 1008
DpnII GATC 9 cut(s) 625, 671, 705, 822, 838, 858, 871, 876, 1006
EaeI YGGCCR 6 cut(s) 127, 159, 540, 780, 882, 966
EagI CGGCCG 1 cut(s) 780
Eam1104I CTCTTC 2 cut(s) 248, 452
EarI CTCTTC 2 cut(s) 248, 452
EciI GGCGGA 4 cut(s) 302, 377, 435, 809
EclXI CGGCCG 1 cut(s) 780
Eco130I CCWWGG 4 cut(s) 156, 537, 582, 594
Eco24I GRGCYC 1 cut(s) 594
Eco47I GGWCC 2 cut(s) 355, 469
Eco47III AGCGCT 1 cut(s) 382
Eco52I CGGCCG 1 cut(s) 780
Eco88I CYCGRG 1 cut(s) 67
EcoRII CCWGG 1 cut(s) 640
EcoT14I CCWWGG 4 cut(s) 156, 537, 582, 594
EcoT38I GRGCYC 1 cut(s) 594
ErhI CCWWGG 4 cut(s) 156, 537, 582, 594
Esp3I CGTCTC 3 cut(s) 400, 660, 690
FaeI CATG 4 cut(s) 160, 259, 541, 598
FaiI YATR 5 cut(s) 158, 257, 277, 539, 596
FaqI GGGAC 1 cut(s) 290
FatI CATG 4 cut(s) 156, 255, 537, 594
FauI CCCGC 5 cut(s) 101, 205, 274, 410, 464
FblI GTMKAC 1 cut(s) 426
Fnu4HI GCNGC 7 cut(s) 33, 73, 113, 127, 747, 750, 1015
FokI GGATG 1 cut(s) 971
FriOI GRGCYC 1 cut(s) 594
Fsp4HI GCNGC 7 cut(s) 33, 73, 113, 127, 747, 750, 1015
FspBI CTAG 1 cut(s) 804
GlaI GCGC 1 cut(s) 382
GluI GCNGC 7 cut(s) 33, 73, 113, 127, 747, 750, 1015
GsuI CTGGAG 3 cut(s) 158, 361, 959
HaeII RGCGCY 1 cut(s) 384
HaeIII GGCC 9 cut(s) 129, 161, 444, 477, 542, 699, 782, 884, 968
HgaI GACGC 4 cut(s) 64, 242, 268, 1015
HhaI GCGC 1 cut(s) 383
Hin1I GRCGYC 3 cut(s) 75, 234, 867
Hin1II CATG 4 cut(s) 160, 259, 541, 598
Hin6I GCGC 1 cut(s) 381
HinP1I GCGC 1 cut(s) 381
HincII GTYRAC 1 cut(s) 427
HindII GTYRAC 1 cut(s) 427
HinfI GANTC 7 cut(s) 104, 423, 554, 569, 611, 785, 890
HphI GGTGA 5 cut(s) 181, 205, 563, 673, 1013
Hpy166II GTNNAC 3 cut(s) 427, 472, 1021
Hpy188I TCNGA 6 cut(s) 169, 482, 838, 865, 876, 1041
Hpy188III TCNNGA 1 cut(s) 842
Hpy8I GTNNAC 3 cut(s) 427, 472, 1021
Hpy99I CGWCG 9 cut(s) 80, 236, 305, 431, 467, 757, 869, 872, 1031
HpyAV CCTTC 3 cut(s) 56, 220, 904
HpyCH4III ACNGT 6 cut(s) 518, 563, 620, 654, 694, 900
HpyCH4IV ACGT 4 cut(s) 300, 429, 462, 867
HpyCH4V TGCA 2 cut(s) 112, 150
HpyF10VI GCNNNNNNNGC 8 cut(s) 118, 387, 483, 492, 755, 800, 1023, 1032
HpyF3I CTNAG 1 cut(s) 412
HpySE526I ACGT 4 cut(s) 300, 429, 462, 867
Hsp92I GRCGYC 3 cut(s) 75, 234, 867
Hsp92II CATG 4 cut(s) 160, 259, 541, 598
HspAI GCGC 1 cut(s) 381
KroI GCCGGC 2 cut(s) 712, 884
KroNI GCCGGC 2 cut(s) 714, 886
KspI CCGCGG 1 cut(s) 127
Kzo9I GATC 9 cut(s) 625, 671, 705, 822, 838, 858, 871, 876, 1006
LmnI GCTCC 5 cut(s) 126, 267, 341, 913, 950
Lsp1109I GCAGC 2 cut(s) 124, 1026
LweI GCATC 3 cut(s) 99, 495, 654
MaeI CTAG 1 cut(s) 804
MaeII ACGT 4 cut(s) 300, 429, 462, 867
MaeIII GTNAC 3 cut(s) 598, 661, 994
MalI GATC 9 cut(s) 627, 673, 707, 824, 840, 860, 873, 878, 1008
MbiI CCGCTC 2 cut(s) 72, 336
MboI GATC 9 cut(s) 625, 671, 705, 822, 838, 858, 871, 876, 1006
MboII GAAGA 4 cut(s) 211, 235, 439, 672
MflI RGATCY 4 cut(s) 625, 671, 705, 876
MhlI GDGCHC 2 cut(s) 123, 594
MlsI TGGCCA 3 cut(s) 161, 542, 968
MluCI AATT 2 cut(s) 735, 831
MluNI TGGCCA 3 cut(s) 161, 542, 968
MlyI GAGTC 3 cut(s) 113, 432, 899
MmeI TCCRAC 6 cut(s) 192, 351, 582, 888, 936, 984
Mox20I TGGCCA 3 cut(s) 161, 542, 968
MroNI GCCGGC 2 cut(s) 712, 884
MscI TGGCCA 3 cut(s) 161, 542, 968
MseI TTAA 1 cut(s) 776
Msp20I TGGCCA 3 cut(s) 161, 542, 968
MspA1I CMGCKG 1 cut(s) 126
MspR9I CCNGG 2 cut(s) 441, 642
MvaI CCWGG 1 cut(s) 642
MvnI CGCG 5 cut(s) 96, 126, 467, 1026, 1035
MwoI GCNNNNNNNGC 8 cut(s) 118, 387, 483, 492, 755, 800, 1023, 1032
NaeI GCCGGC 2 cut(s) 714, 886
NciI CCSGG 1 cut(s) 441
NcoI CCATGG 3 cut(s) 156, 537, 594
NdeII GATC 9 cut(s) 625, 671, 705, 822, 838, 858, 871, 876, 1006
NgoMIV GCCGGC 2 cut(s) 712, 884
NlaIII CATG 4 cut(s) 160, 259, 541, 598
NlaIV GGNNCC 3 cut(s) 534, 579, 759
NmuCI GTSAC 3 cut(s) 598, 661, 994
PcsI WCGNNNNNNNCGW 5 cut(s) 228, 423, 486, 504, 978
PdiI GCCGGC 2 cut(s) 714, 886
PfeI GAWTC 4 cut(s) 554, 569, 611, 785
Pfl23II CGTACG 1 cut(s) 620
PinAI ACCGGT 1 cut(s) 760
PkrI GCNGC 7 cut(s) 34, 74, 114, 128, 748, 751, 1016
PleI GAGTC 3 cut(s) 112, 431, 898
PpsI GAGTC 3 cut(s) 112, 431, 898
Psp6I CCWGG 1 cut(s) 640
PspGI CCWGG 1 cut(s) 640
PspLI CGTACG 1 cut(s) 620
PspN4I GGNNCC 3 cut(s) 534, 579, 759
PspPI GGNCC 2 cut(s) 355, 469
PsuI RGATCY 4 cut(s) 625, 671, 705, 876
RsaI GTAC 6 cut(s) 19, 101, 565, 622, 723, 765
RsaNI GTAC 6 cut(s) 18, 100, 564, 621, 722, 764
SacII CCGCGG 1 cut(s) 127
SalI GTCGAC 1 cut(s) 425
SaqAI TTAA 1 cut(s) 776
SatI GCNGC 7 cut(s) 33, 73, 113, 127, 747, 750, 1015
Sau3AI GATC 9 cut(s) 625, 671, 705, 822, 838, 858, 871, 876, 1006
Sau96I GGNCC 2 cut(s) 355, 469
SchI GAGTC 3 cut(s) 113, 432, 899
ScrFI CCNGG 2 cut(s) 441, 642
SduI GDGCHC 2 cut(s) 123, 594
SfaNI GCATC 3 cut(s) 99, 495, 654
SfcI CTRYAG 2 cut(s) 514, 693
Sfr303I CCGCGG 1 cut(s) 127
SgrBI CCGCGG 1 cut(s) 127
SinI GGWCC 2 cut(s) 355, 469
Sse9I AATT 2 cut(s) 735, 831
SspMI CTAG 1 cut(s) 804
StyD4I CCNGG 2 cut(s) 439, 640
StyI CCWWGG 4 cut(s) 156, 537, 582, 594
TaaI ACNGT 6 cut(s) 518, 563, 620, 654, 694, 900
TaiI ACGT 4 cut(s) 303, 432, 465, 870
TaqI TCGA 7 cut(s) 107, 252, 426, 588, 851, 870, 972
TaqII GACCGA 1 cut(s) 343
TasI AATT 2 cut(s) 735, 831
TauI GCSGC 5 cut(s) 35, 75, 129, 749, 752
TfiI GAWTC 4 cut(s) 554, 569, 611, 785
Tru1I TTAA 1 cut(s) 776
Tru9I TTAA 1 cut(s) 776
TscAI CASTG 2 cut(s) 182, 697
TseFI GTSAC 3 cut(s) 598, 661, 994
TseI GCWGC 2 cut(s) 112, 1014
Tsp45I GTSAC 3 cut(s) 598, 661, 994
TspDTI ATGAA 1 cut(s) 923
TspGWI ACGGA 6 cut(s) 5, 147, 638, 666, 709, 778
TspRI CASTG 2 cut(s) 182, 697
VpaK11BI GGWCC 2 cut(s) 355, 469
XapI RAATTY 2 cut(s) 735, 831
XmiI GTMKAC 1 cut(s) 426
XspI CTAG 1 cut(s) 804
ZraI GACGTC 1 cut(s) 868
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.