Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0008590

Physical Location & Seq

Genomic Coordinates Forward (+)

16970675 .. 16971211

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g13350.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGCGACGTTCACCGTTCGATCACTCTTGCCAGTTCCGATACTCCTCCTCGTCGTCGCCGTCTTCCTCAGTTTCCCGACATGCGTGGTGTCGATCTCCTCCCGCGAGAACGAGTTAATGCAGCGCGTGCTTCACAACCTTGGCTACAATCTCATCTGCAACGCCATGGCCACCTTTGACCTCCAGTACGAGATCCTCACACTTCCGCCCAACGCCTCCTTCACCATCTTCGGTCCCACCGACGCCTCCCTCTTCGCCCTCGACATGATCCAAACGGCATCGTCCTACATCGAAACGTTTCGCCTCCACTTCATCCCTCTCCGACTCTCCGACCTTCGATCCATCTCTTCCGGCTCCATCCTCCCCACTCTCCTCCCCTACTCCGCTCTCCGCCTCACCACTGCCCCCTCCAAGTCACCGGAGTCAACGTCGCCTTGCGCGACCTTTTCTAGTCTCGCCGCGTTGTCGTCCACGGCCTCGTCAGAATCGTCAGCCTCAGCGCTATCGTTTTCGAGTACAAGGAGAGGCTGGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

179

Amino Acids

19.24

Weight (kDa)

6.71

Isoelectric Point (pI)

62.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008590)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15190
fragaria_vesca	FvH4_2g02380 FvH4_2g02450 FvH4_2g04910 FvH4_3g08610 FvH4_4g13350 FvH4_4g36540 FvH4_4g36551 FvH4_5g29740
malus_domestica	MD15G1420000.v1.1
prunus_persica	Prupe.1G566000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0223241 RchiOBHm_Chr7g0223251
rosa_laevigata	RLG00000001997
rosa_multiflora	Rmu_co8206110.1_g000001 Rmu_sc0002192.1_g000007 Rmu_sc0009034.1_g000005
rosa_roxburghii	Rroxscaffold_3G00236010
rosa_rugosa	Rorug07G0213800
rosa_samantha	Rh1AG061200 Rh2CG525600 Rh7DG354200
rosa_wichuraiana	Rw7G030520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	386
AccII	CGCG	4 cut(s)	105, 126, 440, 461
AciI	CCGC	5 cut(s)	103, 206, 384, 391, 459
AclI	AACGTT	1 cut(s)	296
AclWI	GGATC	3 cut(s)	187, 262, 333
AcoI	YGGCCR	1 cut(s)	168
AcyI	GRCGYC	1 cut(s)	243
AfaI	GTAC	2 cut(s)	188, 517
AfeI	AGCGCT	1 cut(s)	501
AjuI	GAANNNNNNNTTGG	2 cut(s)	203, 235
Alw26I	GTCTC	1 cut(s)	458
AlwI	GGATC	3 cut(s)	187, 262, 333
Aor51HI	AGCGCT	1 cut(s)	501
AoxI	GGCC	2 cut(s)	168, 474
ApeKI	GCWGC	1 cut(s)	121
Asp700I	GAANNNNTTC	1 cut(s)	297
AspLEI	GCGC	3 cut(s)	126, 440, 502
AspS9I	GGNCC	1 cut(s)	233
AsuHPI	GGTGA	4 cut(s)	4, 214, 388, 408
AvaII	GGWCC	1 cut(s)	233
BalI	TGGCCA	1 cut(s)	170
BbsI	GAAGAC	1 cut(s)	55
BbvCI	CCTCAGC	1 cut(s)	496
BbvI	GCAGC	1 cut(s)	133
BccI	CCATC	3 cut(s)	233, 350, 365
BceAI	ACGGC	3 cut(s)	44, 291, 489
BcoDI	GTCTC	1 cut(s)	458
BfaI	CTAG	1 cut(s)	450
BfoI	RGCGCY	1 cut(s)	503
BisI	GCNGC	2 cut(s)	122, 459
BlsI	GCNGC	2 cut(s)	123, 460
Bme18I	GGWCC	1 cut(s)	233
BmgT120I	GGNCC	1 cut(s)	233
BmiI	GGNNCC	2 cut(s)	235, 355
BmsI	GCATC	1 cut(s)	287
BpiI	GAAGAC	1 cut(s)	55
BpmI	CTGGAG	1 cut(s)	167
Bpu10I	CCTNAGC	1 cut(s)	496
BsaHI	GRCGYC	1 cut(s)	243
BsaJI	CCNNGG	3 cut(s)	139, 165, 471
BsaWI	WCCGGW	1 cut(s)	418
BsaXI	ACNNNNNCTCC	2 cut(s)	413, 443
Bse1I	ACTGG	2 cut(s)	32, 184
BseDI	CCNNGG	3 cut(s)	139, 165, 471
BseGI	GGATG	2 cut(s)	312, 357
BseMII	CTCAG	2 cut(s)	82, 510
BseNI	ACTGG	2 cut(s)	32, 184
BseRI	GAGGAG	4 cut(s)	35, 38, 88, 362
BseXI	GCAGC	1 cut(s)	133
BseYI	CCCAGC	1 cut(s)	528
Bsh1236I	CGCG	4 cut(s)	105, 126, 440, 461
BshFI	GGCC	2 cut(s)	170, 476
BsiSI	CCGG	2 cut(s)	351, 419
BslFI	GGGAC	1 cut(s)	219
BsmAI	GTCTC	1 cut(s)	458
BsmFI	GGGAC	1 cut(s)	219
BsnI	GGCC	2 cut(s)	170, 476
Bsp143I	GATC	5 cut(s)	20, 93, 192, 267, 338
Bsp19I	CCATGG	1 cut(s)	165
BspACI	CCGC	5 cut(s)	103, 206, 384, 391, 459
BspANI	GGCC	2 cut(s)	170, 476
BspCNI	CTCAG	2 cut(s)	81, 509
BspFNI	CGCG	4 cut(s)	105, 126, 440, 461
BspLI	GGNNCC	2 cut(s)	235, 355
BspPI	GGATC	3 cut(s)	187, 262, 333
BsrBI	CCGCTC	1 cut(s)	386
BsrI	ACTGG	2 cut(s)	32, 184
BssECI	CCNNGG	3 cut(s)	139, 165, 471
BssMI	GATC	5 cut(s)	20, 93, 192, 267, 338
BssNI	GRCGYC	1 cut(s)	243
BssT1I	CCWWGG	2 cut(s)	139, 165
Bst4CI	ACNGT	1 cut(s)	16
Bst6I	CTCTTC	2 cut(s)	257, 352
BstACI	GRCGYC	1 cut(s)	243
BstAPI	GCANNNNNTGC	1 cut(s)	127
BstC8I	GCNNGC	1 cut(s)	128
BstDEI	CTNAG	2 cut(s)	68, 496
BstDSI	CCRYGG	2 cut(s)	165, 471
BstF5I	GGATG	2 cut(s)	312, 357
BstFNI	CGCG	4 cut(s)	105, 126, 440, 461
BstH2I	RGCGCY	1 cut(s)	503
BstHHI	GCGC	3 cut(s)	126, 440, 502
BstKTI	GATC	5 cut(s)	23, 96, 195, 270, 341
BstMAI	GTCTC	1 cut(s)	458
BstMBI	GATC	5 cut(s)	20, 93, 192, 267, 338
BstMWI	GCNNNNNNNGC	1 cut(s)	127
BstNSI	RCATGY	1 cut(s)	84
BstUI	CGCG	4 cut(s)	105, 126, 440, 461
BstV1I	GCAGC	1 cut(s)	133
BstV2I	GAAGAC	1 cut(s)	55
BstX2I	RGATCY	1 cut(s)	192
BstYI	RGATCY	1 cut(s)	192
BsuRI	GGCC	2 cut(s)	170, 476
BtgI	CCRYGG	2 cut(s)	165, 471
BtsCI	GGATG	2 cut(s)	312, 357
BtsI	GCAGTG	1 cut(s)	399
BtsIMutI	CAGTG	1 cut(s)	399
Cac8I	GCNNGC	1 cut(s)	128
CfoI	GCGC	3 cut(s)	126, 440, 502
Cfr13I	GGNCC	1 cut(s)	233
CseI	GACGC	1 cut(s)	251
Csp6I	GTAC	2 cut(s)	187, 516
CviAII	CATG	3 cut(s)	81, 166, 265
CviJI	RGCY	6 cut(s)	144, 170, 354, 476, 494, 528
CviKI_1	RGCY	6 cut(s)	144, 170, 354, 476, 494, 528
CviQI	GTAC	2 cut(s)	187, 516
DdeI	CTNAG	2 cut(s)	68, 496
DpnI	GATC	5 cut(s)	22, 95, 194, 269, 340
DpnII	GATC	5 cut(s)	20, 93, 192, 267, 338
EaeI	YGGCCR	1 cut(s)	168
Eam1104I	CTCTTC	2 cut(s)	257, 352
EarI	CTCTTC	2 cut(s)	257, 352
EciI	GGCGGA	2 cut(s)	195, 380
Eco130I	CCWWGG	2 cut(s)	139, 165
Eco47I	GGWCC	1 cut(s)	233
Eco47III	AGCGCT	1 cut(s)	501
EcoT14I	CCWWGG	2 cut(s)	139, 165
ErhI	CCWWGG	2 cut(s)	139, 165
FaeI	CATG	3 cut(s)	84, 169, 268
FaiI	YATR	3 cut(s)	82, 167, 266
FaqI	GGGAC	1 cut(s)	219
FatI	CATG	3 cut(s)	80, 165, 264
FauI	CCCGC	1 cut(s)	110
Fnu4HI	GCNGC	2 cut(s)	122, 459
FokI	GGATG	2 cut(s)	299, 344
Fsp4HI	GCNGC	2 cut(s)	122, 459
FspBI	CTAG	1 cut(s)	450
GlaI	GCGC	3 cut(s)	125, 439, 501
GluI	GCNGC	2 cut(s)	122, 459
GsaI	CCCAGC	1 cut(s)	532
GsuI	CTGGAG	1 cut(s)	167
HaeII	RGCGCY	1 cut(s)	503
HaeIII	GGCC	2 cut(s)	170, 476
HapII	CCGG	2 cut(s)	351, 419
HgaI	GACGC	1 cut(s)	251
HhaI	GCGC	3 cut(s)	126, 440, 502
Hin1I	GRCGYC	1 cut(s)	243
Hin1II	CATG	3 cut(s)	84, 169, 268
Hin6I	GCGC	3 cut(s)	124, 438, 500
HinP1I	GCGC	3 cut(s)	124, 438, 500
HincII	GTYRAC	1 cut(s)	426
HindII	GTYRAC	1 cut(s)	426
HinfI	GANTC	3 cut(s)	324, 422, 485
HpaII	CCGG	2 cut(s)	351, 419
HphI	GGTGA	4 cut(s)	4, 214, 388, 408
Hpy166II	GTNNAC	3 cut(s)	12, 426, 471
Hpy188I	TCNGA	4 cut(s)	39, 323, 331, 484
Hpy188III	TCNNGA	1 cut(s)	76
Hpy8I	GTNNAC	3 cut(s)	12, 426, 471
Hpy99I	CGWCG	5 cut(s)	10, 56, 59, 245, 433
HpyAV	CCTTC	2 cut(s)	229, 344
HpyCH4III	ACNGT	1 cut(s)	16
HpyCH4IV	ACGT	3 cut(s)	8, 296, 428
HpyCH4V	TGCA	2 cut(s)	121, 159
HpyF10VI	GCNNNNNNNGC	1 cut(s)	127
HpyF3I	CTNAG	2 cut(s)	68, 496
HpySE526I	ACGT	3 cut(s)	8, 296, 428
Hsp92I	GRCGYC	1 cut(s)	243
Hsp92II	CATG	3 cut(s)	84, 169, 268
HspAI	GCGC	3 cut(s)	124, 438, 500
Kzo9I	GATC	5 cut(s)	20, 93, 192, 267, 338
LmnI	GCTCC	1 cut(s)	359
LpnPI	CCDG	5 cut(s)	45, 197, 364, 432, 514
Lsp1109I	GCAGC	1 cut(s)	133
LweI	GCATC	1 cut(s)	287
MaeI	CTAG	1 cut(s)	450
MaeII	ACGT	3 cut(s)	8, 296, 428
MaeIII	GTNAC	1 cut(s)	414
MalI	GATC	5 cut(s)	22, 95, 194, 269, 340
MbiI	CCGCTC	1 cut(s)	386
MboI	GATC	5 cut(s)	20, 93, 192, 267, 338
MboII	GAAGA	4 cut(s)	55, 220, 244, 339
MflI	RGATCY	1 cut(s)	192
MlsI	TGGCCA	1 cut(s)	170
MluNI	TGGCCA	1 cut(s)	170
MlyI	GAGTC	2 cut(s)	318, 431
MmeI	TCCRAC	2 cut(s)	346, 354
Mox20I	TGGCCA	1 cut(s)	170
MroXI	GAANNNNTTC	1 cut(s)	297
MscI	TGGCCA	1 cut(s)	170
MseI	TTAA	1 cut(s)	116
Msp20I	TGGCCA	1 cut(s)	170
MspI	CCGG	2 cut(s)	351, 419
MvnI	CGCG	4 cut(s)	105, 126, 440, 461
MwoI	GCNNNNNNNGC	1 cut(s)	127
NcoI	CCATGG	1 cut(s)	165
NdeII	GATC	5 cut(s)	20, 93, 192, 267, 338
NlaIII	CATG	3 cut(s)	84, 169, 268
NlaIV	GGNNCC	2 cut(s)	235, 355
NmuCI	GTSAC	1 cut(s)	414
NspI	RCATGY	1 cut(s)	84
PcsI	WCGNNNNNNNCGW	4 cut(s)	57, 237, 437, 485
PdmI	GAANNNNTTC	1 cut(s)	297
PfeI	GAWTC	1 cut(s)	485
PkrI	GCNGC	2 cut(s)	123, 460
PleI	GAGTC	2 cut(s)	318, 430
PpsI	GAGTC	2 cut(s)	318, 430
Psp1406I	AACGTT	1 cut(s)	296
PspFI	CCCAGC	1 cut(s)	528
PspN4I	GGNNCC	2 cut(s)	235, 355
PspPI	GGNCC	1 cut(s)	233
PsuI	RGATCY	1 cut(s)	192
RsaI	GTAC	2 cut(s)	188, 517
RsaNI	GTAC	2 cut(s)	187, 516
SaqAI	TTAA	1 cut(s)	116
SatI	GCNGC	2 cut(s)	122, 459
Sau3AI	GATC	5 cut(s)	20, 93, 192, 267, 338
Sau96I	GGNCC	1 cut(s)	233
SchI	GAGTC	2 cut(s)	318, 431
SetI	ASST	8 cut(s)	11, 141, 176, 183, 299, 336, 431, 446
SfaNI	GCATC	1 cut(s)	287
SinI	GGWCC	1 cut(s)	233
SsiI	CCGC	5 cut(s)	103, 206, 384, 391, 459
SspMI	CTAG	1 cut(s)	450
StyI	CCWWGG	2 cut(s)	139, 165
TaaI	ACNGT	1 cut(s)	16
TaiI	ACGT	3 cut(s)	11, 299, 431
TaqI	TCGA	6 cut(s)	19, 92, 261, 291, 337, 512
TaqII	GACCGA	1 cut(s)	221
TatI	WGTACW	1 cut(s)	515
TauI	GCSGC	1 cut(s)	461
TfiI	GAWTC	1 cut(s)	485
Tru1I	TTAA	1 cut(s)	116
Tru9I	TTAA	1 cut(s)	116
TscAI	CASTG	1 cut(s)	406
TseFI	GTSAC	1 cut(s)	414
TseI	GCWGC	1 cut(s)	121
Tsp45I	GTSAC	1 cut(s)	414
TspDTI	ATGAA	1 cut(s)	301
TspRI	CASTG	1 cut(s)	406
VpaK11BI	GGWCC	1 cut(s)	233
XceI	RCATGY	1 cut(s)	84
XmnI	GAANNNNTTC	1 cut(s)	297
XspI	CTAG	1 cut(s)	450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.