Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008590

Physical Location & Seq

Genomic Coordinates Reverse (-)

46187152 .. 46189022

Gene Structure 1871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G566000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGAATAACAGCAGCTCTCAGTTTCTTGATTTTGCTTCAATGGCGCTCAAATTCCGTACACTCTCACTCACCGTCCTCCTCCTTGTGCTCATCGCCTTGATCATGCTCCCCGACGGCGTTGTTTCCCTCACACCCCGAGAGTACGATTCGATGCAGCGAGTGCTCCGAGGCCACGGCTACAACCTGATGTGCAACGCCATGGCGACGTCAGATCTCCAGTGGATGCTCCTCACGTTCCCGGCGAACGCGTCCTTCACGATCTTCGCTCCCACCGACGCCTCCCTCTTCGCGCTCGACATGATCCAAACCGCCTCGTCCTACACCGACACCCTCCGCTTCCACGTCGTCCCTCTCCGCCTCTCGCTCTCCAACCTCCGCTCGCTCGCCGCTGGCTCCTTCCTCCCCACGCTCCTCCCCTCCAGCGCTCTCCGCCTTGTCTCCCCCCGCCCCCTCTCCGTCTCCGGAGTCGACGTCGTTTTGCCAGGCCTCTTCTACTCCCGCCACCTGGCGGTTCACGGCCTCGGCGGCATTCTCAGCCTCGCCTCTCTAGTTCCCTACGGTTCCTCCCACTCGCCGGTTCCAAAGGTCGAGCCCATGTCCACGTCTGACTTCAACGGTACGGATCTCTCTCCCGTGATCGCACCTTCTTCGGTGAATACTGGATCTCCGTCTATATCGCCGGCATTTGTCACGGTAGACGAAATTTCGCCAGCGCCGGCTGCACCTTCGCCGTTGTCGGCCAATTCGGTGGCGGAGAGAGCTAGGGTTTTGTTGATGGAGATTAATGCAGATACAGATCATGAGAAATCGAAGTCGATCTCCGACGCCGGTAAGATCTTTGGCAGCGAATCTCCACCGTTGGTGATGGAAGCGCGACCTGAGGGAGTTAATAAGCTGGAGAAATGTGGAGCGTTGGATGAGATGACCATCGACTGCTTTGTGCCAGAAGGAGCTGCTGGATTGGACCACATCAGCGTTCATCATGTGGTTCGTGTTTCGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

335

Amino Acids

35.5

Weight (kDa)

5.54

Isoelectric Point (pI)

49.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008590)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15190
fragaria_vesca	FvH4_2g02380 FvH4_2g02450 FvH4_2g04910 FvH4_3g08610 FvH4_4g13350 FvH4_4g36540 FvH4_4g36551 FvH4_5g29740
malus_domestica	MD15G1420000.v1.1
prunus_persica	Prupe.1G566000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0223241 RchiOBHm_Chr7g0223251
rosa_laevigata	RLG00000001997
rosa_multiflora	Rmu_co8206110.1_g000001 Rmu_sc0002192.1_g000007 Rmu_sc0009034.1_g000005
rosa_roxburghii	Rroxscaffold_3G00236010
rosa_rugosa	Rorug07G0213800
rosa_samantha	Rh1AG061200 Rh2CG525600 Rh7DG354200
rosa_wichuraiana	Rw7G030520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	209, 474
AccBSI	CCGCTC	1 cut(s)	378
AccI	GTMKAC	2 cut(s)	468, 696
AccII	CGCG	3 cut(s)	248, 290, 874
AccIII	TCCGGA	1 cut(s)	461
AclWI	GGATC	3 cut(s)	295, 630, 670
AcoI	YGGCCR	1 cut(s)	738
AcsI	RAATTY	2 cut(s)	50, 702
AcyI	GRCGYC	4 cut(s)	206, 276, 471, 825
AfaI	GTAC	3 cut(s)	58, 143, 619
AfeI	AGCGCT	1 cut(s)	424
AfiI	CCNNNNNNNGG	3 cut(s)	505, 508, 574
AflIII	ACRYGT	1 cut(s)	246
AgsI	TTSAA	2 cut(s)	39, 613
AjiI	CACGTC	2 cut(s)	343, 603
AjnI	CCWGG	2 cut(s)	481, 504
AluBI	AGCT	4 cut(s)	15, 761, 895, 953
AluI	AGCT	4 cut(s)	15, 761, 895, 953
Alw21I	GWGCWC	2 cut(s)	90, 165
Alw26I	GTCTC	2 cut(s)	442, 463
AlwI	GGATC	3 cut(s)	295, 630, 670
Ama87I	CYCGRG	1 cut(s)	135
Aor13HI	TCCGGA	1 cut(s)	461
Aor51HI	AGCGCT	1 cut(s)	424
AoxI	GGCC	4 cut(s)	169, 484, 517, 738
ApeKI	GCWGC	5 cut(s)	12, 154, 719, 843, 953
ApoI	RAATTY	2 cut(s)	50, 702
AseI	ATTAAT	1 cut(s)	783
AspLEI	GCGC	5 cut(s)	46, 292, 425, 715, 874
AspS9I	GGNCC	1 cut(s)	964
AsuC2I	CCSGG	1 cut(s)	239
AsuHPI	GGTGA	3 cut(s)	61, 664, 874
AvaI	CYCGRG	1 cut(s)	135
AvaII	GGWCC	1 cut(s)	964
AxyI	CCTNAGG	1 cut(s)	879
BanII	GRGCYC	1 cut(s)	594
Bbv12I	GWGCWC	2 cut(s)	90, 165
BbvI	GCAGC	5 cut(s)	24, 166, 706, 855, 940
BccI	CCATC	3 cut(s)	769, 859, 935
BceAI	ACGGC	4 cut(s)	130, 190, 532, 715
BcgI	CGANNNNNNTGC	2 cut(s)	630, 664
BciT130I	CCWGG	2 cut(s)	483, 506
BclI	TGATCA	1 cut(s)	99
BcnI	CCSGG	1 cut(s)	239
BcoDI	GTCTC	2 cut(s)	442, 463
BfaI	CTAG	2 cut(s)	548, 762
BfoI	RGCGCY	3 cut(s)	47, 426, 716
BglI	GCCNNNNNGGC	1 cut(s)	525
BglII	AGATCT	2 cut(s)	211, 834
BisI	GCNGC	7 cut(s)	13, 155, 387, 526, 720, 844, 954
BlsI	GCNGC	7 cut(s)	14, 156, 388, 527, 721, 845, 955
Bme1390I	CCNGG	3 cut(s)	239, 483, 506
Bme18I	GGWCC	1 cut(s)	964
BmeT110I	CYCGRG	1 cut(s)	135
BmgBI	CACGTC	2 cut(s)	343, 603
BmgT120I	GGNCC	1 cut(s)	964
BmiI	GGNNCC	3 cut(s)	394, 562, 579
BmrFI	CCNGG	3 cut(s)	239, 483, 506
BmsI	GCATC	2 cut(s)	141, 213
BpmI	CTGGAG	3 cut(s)	200, 403, 917
BpuMI	CCSGG	1 cut(s)	239
BsaBI	GATNNNNATC	2 cut(s)	795, 926
BsaHI	GRCGYC	4 cut(s)	206, 276, 471, 825
BsaJI	CCNNGG	4 cut(s)	166, 172, 198, 520
BsaWI	WCCGGW	1 cut(s)	461
BsaXI	ACNNNNNCTCC	6 cut(s)	456, 486, 548, 578, 649, 679
Bsc4I	CCNNNNNNNGG	3 cut(s)	505, 508, 574
Bse118I	RCCGGY	4 cut(s)	574, 679, 715, 827
Bse1I	ACTGG	2 cut(s)	217, 664
Bse21I	CCTNAGG	1 cut(s)	879
Bse8I	GATNNNNATC	2 cut(s)	795, 926
BseAI	TCCGGA	1 cut(s)	461
BseBI	CCWGG	2 cut(s)	483, 506
BseDI	CCNNGG	4 cut(s)	166, 172, 198, 520
BseGI	GGATG	2 cut(s)	228, 922
BseJI	GATNNNNATC	2 cut(s)	795, 926
BseLI	CCNNNNNNNGG	3 cut(s)	505, 508, 574
BseMII	CTCAG	3 cut(s)	32, 547, 870
BseNI	ACTGG	2 cut(s)	217, 664
BseRI	GAGGAG	3 cut(s)	68, 218, 401
BseXI	GCAGC	5 cut(s)	24, 166, 706, 855, 940
BsgI	GTGCAG	1 cut(s)	705
Bsh1236I	CGCG	3 cut(s)	248, 290, 874
BshFI	GGCC	4 cut(s)	171, 486, 519, 740
BsiHKAI	GWGCWC	2 cut(s)	90, 165
BsiHKCI	CYCGRG	1 cut(s)	135
BsiSI	CCGG	6 cut(s)	239, 462, 575, 680, 716, 828
BslFI	GGGAC	1 cut(s)	332
BslI	CCNNNNNNNGG	3 cut(s)	505, 508, 574
BsmAI	GTCTC	2 cut(s)	442, 463
BsmBI	CGTCTC	1 cut(s)	463
BsmFI	GGGAC	1 cut(s)	332
BsmI	GAATGC	1 cut(s)	528
BsnI	GGCC	4 cut(s)	171, 486, 519, 740
BsoBI	CYCGRG	1 cut(s)	135
Bsp1286I	GDGCHC	3 cut(s)	90, 165, 594
Bsp13I	TCCGGA	1 cut(s)	461
Bsp19I	CCATGG	1 cut(s)	198
BspANI	GGCC	4 cut(s)	171, 486, 519, 740
BspCNI	CTCAG	3 cut(s)	31, 546, 871
BspEI	TCCGGA	1 cut(s)	461
BspFNI	CGCG	3 cut(s)	248, 290, 874
BspHI	TCATGA	1 cut(s)	799
BspLI	GGNNCC	3 cut(s)	394, 562, 579
BspPI	GGATC	3 cut(s)	295, 630, 670
BsrBI	CCGCTC	1 cut(s)	378
BsrFI	RCCGGY	4 cut(s)	574, 679, 715, 827
BsrI	ACTGG	2 cut(s)	217, 664
BssAI	RCCGGY	4 cut(s)	574, 679, 715, 827
BssECI	CCNNGG	4 cut(s)	166, 172, 198, 520
BssNI	GRCGYC	4 cut(s)	206, 276, 471, 825
BssT1I	CCWWGG	1 cut(s)	198
Bst2UI	CCWGG	2 cut(s)	483, 506
Bst4CI	ACNGT	5 cut(s)	73, 560, 617, 694, 858
Bst6I	CTCTTC	2 cut(s)	290, 494
BstACI	GRCGYC	4 cut(s)	206, 276, 471, 825
BstAPI	GCANNNNNTGC	1 cut(s)	160
BstC8I	GCNNGC	6 cut(s)	380, 384, 391, 681, 711, 717
BstDEI	CTNAG	3 cut(s)	18, 533, 879
BstDSI	CCRYGG	2 cut(s)	172, 198
BstF5I	GGATG	2 cut(s)	228, 922
BstFNI	CGCG	3 cut(s)	248, 290, 874
BstH2I	RGCGCY	3 cut(s)	47, 426, 716
BstHHI	GCGC	5 cut(s)	46, 292, 425, 715, 874
BstMAI	GTCTC	2 cut(s)	442, 463
BstMWI	GCNNNNNNNGC	7 cut(s)	41, 160, 429, 525, 534, 719, 758
BstNI	CCWGG	2 cut(s)	483, 506
BstSCI	CCNGG	3 cut(s)	237, 481, 504
BstUI	CGCG	3 cut(s)	248, 290, 874
BstV1I	GCAGC	5 cut(s)	24, 166, 706, 855, 940
BstX2I	RGATCY	4 cut(s)	211, 622, 662, 834
BstXI	CCANNNNNNTGG	1 cut(s)	748
BstYI	RGATCY	4 cut(s)	211, 622, 662, 834
Bsu36I	CCTNAGG	1 cut(s)	879
BsuRI	GGCC	4 cut(s)	171, 486, 519, 740
BtgI	CCRYGG	2 cut(s)	172, 198
BtgZI	GCGATG	1 cut(s)	76
BtrI	CACGTC	2 cut(s)	343, 603
BtsCI	GGATG	2 cut(s)	228, 922
BtsIMutI	CAGTG	1 cut(s)	224
Cac8I	GCNNGC	6 cut(s)	380, 384, 391, 681, 711, 717
CciI	TCATGA	1 cut(s)	799
CfoI	GCGC	5 cut(s)	46, 292, 425, 715, 874
Cfr10I	RCCGGY	4 cut(s)	574, 679, 715, 827
Cfr13I	GGNCC	1 cut(s)	964
CseI	GACGC	3 cut(s)	237, 284, 833
Csp6I	GTAC	3 cut(s)	57, 142, 618
CviAII	CATG	6 cut(s)	103, 199, 298, 595, 800, 983
CviQI	GTAC	3 cut(s)	57, 142, 618
DdeI	CTNAG	3 cut(s)	18, 533, 879
EaeI	YGGCCR	1 cut(s)	738
Eam1104I	CTCTTC	2 cut(s)	290, 494
EarI	CTCTTC	2 cut(s)	290, 494
EciI	GGCGGA	3 cut(s)	344, 419, 767
Eco130I	CCWWGG	1 cut(s)	198
Eco147I	AGGCCT	1 cut(s)	486
Eco24I	GRGCYC	1 cut(s)	594
Eco47I	GGWCC	1 cut(s)	964
Eco47III	AGCGCT	1 cut(s)	424
Eco81I	CCTNAGG	1 cut(s)	879
Eco88I	CYCGRG	1 cut(s)	135
EcoRII	CCWGG	2 cut(s)	481, 504
EcoT14I	CCWWGG	1 cut(s)	198
EcoT38I	GRGCYC	1 cut(s)	594
ErhI	CCWWGG	1 cut(s)	198
Esp3I	CGTCTC	1 cut(s)	463
FaeI	CATG	6 cut(s)	106, 202, 301, 598, 803, 986
FaiI	YATR	7 cut(s)	104, 200, 299, 596, 674, 801, 984
FaqI	GGGAC	1 cut(s)	332
FatI	CATG	6 cut(s)	102, 198, 297, 594, 799, 982
FauI	CCCGC	2 cut(s)	452, 506
FbaI	TGATCA	1 cut(s)	99
FblI	GTMKAC	2 cut(s)	468, 696
Fnu4HI	GCNGC	7 cut(s)	13, 155, 387, 526, 720, 844, 954
FokI	GGATG	2 cut(s)	235, 929
FriOI	GRGCYC	1 cut(s)	594
Fsp4HI	GCNGC	7 cut(s)	13, 155, 387, 526, 720, 844, 954
FspBI	CTAG	2 cut(s)	548, 762
GlaI	GCGC	5 cut(s)	45, 291, 424, 714, 873
GluI	GCNGC	7 cut(s)	13, 155, 387, 526, 720, 844, 954
GsuI	CTGGAG	3 cut(s)	200, 403, 917
HaeII	RGCGCY	3 cut(s)	47, 426, 716
HaeIII	GGCC	4 cut(s)	171, 486, 519, 740
HapII	CCGG	6 cut(s)	239, 462, 575, 680, 716, 828
HgaI	GACGC	3 cut(s)	237, 284, 833
HhaI	GCGC	5 cut(s)	46, 292, 425, 715, 874
Hin1I	GRCGYC	4 cut(s)	206, 276, 471, 825
Hin1II	CATG	6 cut(s)	106, 202, 301, 598, 803, 986
Hin6I	GCGC	5 cut(s)	44, 290, 423, 713, 872
HinP1I	GCGC	5 cut(s)	44, 290, 423, 713, 872
HincII	GTYRAC	1 cut(s)	469
HindII	GTYRAC	1 cut(s)	469
HinfI	GANTC	3 cut(s)	146, 465, 848
HpaII	CCGG	6 cut(s)	239, 462, 575, 680, 716, 828
HphI	GGTGA	3 cut(s)	61, 664, 874
Hpy166II	GTNNAC	5 cut(s)	59, 469, 514, 600, 697
Hpy188I	TCNGA	4 cut(s)	167, 211, 607, 823
Hpy188III	TCNNGA	4 cut(s)	26, 256, 462, 800
Hpy8I	GTNNAC	5 cut(s)	59, 469, 514, 600, 697
Hpy99I	CGWCG	7 cut(s)	116, 208, 278, 347, 473, 476, 827
HpyAV	CCTTC	5 cut(s)	262, 406, 654, 735, 941
HpyCH4III	ACNGT	5 cut(s)	73, 560, 617, 694, 858
HpyCH4IV	ACGT	5 cut(s)	206, 233, 342, 471, 602
HpyCH4V	TGCA	4 cut(s)	154, 192, 722, 788
HpyF10VI	GCNNNNNNNGC	7 cut(s)	41, 160, 429, 525, 534, 719, 758
HpyF3I	CTNAG	3 cut(s)	18, 533, 879
HpySE526I	ACGT	5 cut(s)	206, 233, 342, 471, 602
Hsp92I	GRCGYC	4 cut(s)	206, 276, 471, 825
Hsp92II	CATG	6 cut(s)	106, 202, 301, 598, 803, 986
HspAI	GCGC	5 cut(s)	44, 290, 423, 713, 872
Kpn2I	TCCGGA	1 cut(s)	461
KroI	GCCGGC	2 cut(s)	679, 715
KroNI	GCCGGC	2 cut(s)	681, 717
Ksp22I	TGATCA	1 cut(s)	99
LmnI	GCTCC	8 cut(s)	111, 168, 231, 271, 398, 414, 908, 950
Lsp1109I	GCAGC	5 cut(s)	24, 166, 706, 855, 940
LweI	GCATC	2 cut(s)	141, 213
MaeI	CTAG	2 cut(s)	548, 762
MaeII	ACGT	5 cut(s)	206, 233, 342, 471, 602
MaeIII	GTNAC	1 cut(s)	688
MbiI	CCGCTC	1 cut(s)	378
MboII	GAAGA	4 cut(s)	253, 277, 481, 639
MflI	RGATCY	4 cut(s)	211, 622, 662, 834
MhlI	GDGCHC	3 cut(s)	90, 165, 594
MluCI	AATT	3 cut(s)	50, 702, 742
MluI	ACGCGT	1 cut(s)	246
MlyI	GAGTC	1 cut(s)	474
MmeI	TCCRAC	3 cut(s)	393, 846, 894
MroI	TCCGGA	1 cut(s)	461
MroNI	GCCGGC	2 cut(s)	679, 715
MseI	TTAA	2 cut(s)	783, 888
MspA1I	CMGCKG	1 cut(s)	389
MspI	CCGG	6 cut(s)	239, 462, 575, 680, 716, 828
MspR9I	CCNGG	3 cut(s)	239, 483, 506
Mva1269I	GAATGC	1 cut(s)	528
MvaI	CCWGG	2 cut(s)	483, 506
MvnI	CGCG	3 cut(s)	248, 290, 874
MwoI	GCNNNNNNNGC	7 cut(s)	41, 160, 429, 525, 534, 719, 758
NaeI	GCCGGC	2 cut(s)	681, 717
NciI	CCSGG	1 cut(s)	239
NcoI	CCATGG	1 cut(s)	198
NgoMIV	GCCGGC	2 cut(s)	679, 715
NlaIII	CATG	6 cut(s)	106, 202, 301, 598, 803, 986
NlaIV	GGNNCC	3 cut(s)	394, 562, 579
NmeAIII	GCCGAG	1 cut(s)	501
NmuCI	GTSAC	1 cut(s)	688
PagI	TCATGA	1 cut(s)	799
PceI	AGGCCT	1 cut(s)	486
PcsI	WCGNNNNNNNCGW	2 cut(s)	239, 270
PctI	GAATGC	1 cut(s)	528
PdiI	GCCGGC	2 cut(s)	681, 717
PfeI	GAWTC	2 cut(s)	146, 848
PkrI	GCNGC	7 cut(s)	14, 156, 388, 527, 721, 845, 955
PleI	GAGTC	1 cut(s)	473
PpsI	GAGTC	1 cut(s)	473
PshBI	ATTAAT	1 cut(s)	783
Psp6I	CCWGG	2 cut(s)	481, 504
PspGI	CCWGG	2 cut(s)	481, 504
PspN4I	GGNNCC	3 cut(s)	394, 562, 579
PspPI	GGNCC	1 cut(s)	964
PsuI	RGATCY	4 cut(s)	211, 622, 662, 834
RsaI	GTAC	3 cut(s)	58, 143, 619
RsaNI	GTAC	3 cut(s)	57, 142, 618
SalI	GTCGAC	1 cut(s)	467
SaqAI	TTAA	2 cut(s)	783, 888
SatI	GCNGC	7 cut(s)	13, 155, 387, 526, 720, 844, 954
Sau96I	GGNCC	1 cut(s)	964
SchI	GAGTC	1 cut(s)	474
ScrFI	CCNGG	3 cut(s)	239, 483, 506
SduI	GDGCHC	3 cut(s)	90, 165, 594
SfaNI	GCATC	2 cut(s)	141, 213
SinI	GGWCC	1 cut(s)	964
Sse9I	AATT	3 cut(s)	50, 702, 742
SseBI	AGGCCT	1 cut(s)	486
SspMI	CTAG	2 cut(s)	548, 762
StuI	AGGCCT	1 cut(s)	486
StyD4I	CCNGG	3 cut(s)	237, 481, 504
StyI	CCWWGG	1 cut(s)	198
TaaI	ACNGT	5 cut(s)	73, 560, 617, 694, 858
TaiI	ACGT	5 cut(s)	209, 236, 345, 474, 605
TaqI	TCGA	8 cut(s)	149, 294, 468, 588, 809, 815, 930, 998
TasI	AATT	3 cut(s)	50, 702, 742
TauI	GCSGC	2 cut(s)	389, 528
TfiI	GAWTC	2 cut(s)	146, 848
Tru1I	TTAA	2 cut(s)	783, 888
Tru9I	TTAA	2 cut(s)	783, 888
TscAI	CASTG	1 cut(s)	224
TseFI	GTSAC	1 cut(s)	688
TseI	GCWGC	5 cut(s)	12, 154, 719, 843, 953
Tsp45I	GTSAC	1 cut(s)	688
TspDTI	ATGAA	2 cut(s)	17, 968
TspGWI	ACGGA	4 cut(s)	44, 445, 635, 657
TspRI	CASTG	1 cut(s)	224
VpaK11BI	GGWCC	1 cut(s)	964
VspI	ATTAAT	1 cut(s)	783
XapI	RAATTY	2 cut(s)	50, 702
XmiI	GTMKAC	2 cut(s)	468, 696
XspI	CTAG	2 cut(s)	548, 762
ZraI	GACGTC	2 cut(s)	207, 472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.