FvH4_2g02450

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0008590
Physical Location & Seq
Reverse (-)
1967506 .. 1968480
975 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g02450.t1

Sequence Viewer

Length: 975 bp
ATGGCGGCGTTCACCGTCCGATCACTATCTCCGGTTCCGACCCTCCTCCTCCTCCTCGCCGTCACCGTCTTCTTCACTCTCCCGACTGGCGCGTCGTCGGTCTCTTCCGACGAGTACGAGCAGATGCAGCGCGTGCTTCGCAGCCGCGGCTTCAATCTCACCTGCAACGCCATGGATGCAGCCGCGCTCGAGCGTGAGATCCTGACACTTCCGGCCAACGGCTCCTTCACCATCTTCGCTCCCACAGACGCCTCCCTCTCCGCACTCAACAAGCAGCAAACCGCGTCGTTTTACACCGAATCGCTCCGCATCCACGTCATCCCTTTCCGCCTCTCGCTTTCGGACCTCCGATCGATCTCCTCCGGCTACCTCCTCCCCACTCTCCTCCCCCACAGCAGCCTCCGCCTCACCAAAGGCCCGCTCCGAGTCGCCGGAGTCGACGTGGCAGATACCGGGATCTTCTACTCCGACCGAATCGCCGTACACGGCCTCGCCGGCACCGTGAATCTCAACGATGTGGTGTACTACGGCGGCGGTGATTCGGTCGTGGTGAACCCAAGGTATATGCTGGAGGAGAATACCACGGCGGCAGAGACCGAGAAAACCAAAGCGGAGACCGAGAAGACGAAAGCAGAGACCGACAAAATCAGGGCTGAGGCCGAAAAGATGAGGGCCGAGTCCGAAAAAATGAGGGCCGAGGAAAGAGCTTGGATGACTAACAAACGGGCAGGGTGTGTTGTAGCGGTCATGGCGTTGGTATTTTTAGCGTGTGGATTCGTTTGGGGAGGAATCTGGCTAGGGCTGATTGGAGATTGGTTGTGCGCTAAAGCTCCTTTCGGAAATCTTAAACACGATCGCCAGGTAGAGAAAGCGGGGGTGCTTCAATTGAAGGATCTCCAGGTTGTGGTGCAGCAAATGACAACTGACGAGCTGACAGATATTGCGGATACCTGCAAAAGATTCAAACGCCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

325

Amino Acids

35.58

Weight (kDa)

6.91

Isoelectric Point (pI)

44.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 54 - 160 8.6e-07 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 170
AasI GACNNNNNNGTC 1 cut(s) 91
Acc36I ACCTGC 2 cut(s) 170, 959
AccB1I GGYRCC 1 cut(s) 497
AccB7I CCANNNNNTGG 1 cut(s) 904
AccBSI CCGCTC 1 cut(s) 421
AccI GTMKAC 1 cut(s) 438
AccII CGCG 5 cut(s) 92, 132, 147, 185, 284
AclWI GGATC 3 cut(s) 193, 464, 900
AcoI YGGCCR 1 cut(s) 213
AcyI GRCGYC 1 cut(s) 249
AfaI GTAC 3 cut(s) 116, 483, 524
AfiI CCNNNNNNNGG 2 cut(s) 218, 904
AgsI TTSAA 4 cut(s) 154, 884, 889, 964
AjiI CACGTC 2 cut(s) 316, 442
AjnI CCWGG 2 cut(s) 858, 897
AjuI GAANNNNNNNTTGG 2 cut(s) 209, 241
AluBI AGCT 3 cut(s) 707, 830, 931
AluI AGCT 3 cut(s) 707, 830, 931
Alw26I GTCTC 4 cut(s) 106, 587, 608, 629
AlwI GGATC 3 cut(s) 193, 464, 900
Ama87I CYCGRG 1 cut(s) 188
AoxI GGCC 6 cut(s) 213, 415, 487, 657, 672, 693
ApeKI GCWGC 6 cut(s) 127, 141, 179, 274, 396, 910
AspLEI GCGC 4 cut(s) 92, 132, 187, 824
AspS9I GGNCC 4 cut(s) 343, 416, 672, 693
AsuC2I CCSGG 1 cut(s) 454
AsuHPI GGTGA 7 cut(s) 4, 55, 151, 220, 400, 548, 562
AvaI CYCGRG 1 cut(s) 188
AvaII GGWCC 1 cut(s) 343
BanI GGYRCC 1 cut(s) 497
BbsI GAAGAC 2 cut(s) 61, 629
BbvCI CCTCAGC 1 cut(s) 654
BbvI GCAGC 6 cut(s) 139, 153, 191, 286, 408, 922
BccI CCATC 1 cut(s) 239
BceAI ACGGC 6 cut(s) 44, 235, 464, 502, 544, 600
BciT130I CCWGG 2 cut(s) 860, 899
BciVI GTATCC 1 cut(s) 940
BcnI CCSGG 1 cut(s) 454
BcoDI GTCTC 4 cut(s) 106, 587, 608, 629
BfaI CTAG 1 cut(s) 797
BfuAI ACCTGC 2 cut(s) 170, 959
BfuI GTATCC 1 cut(s) 940
BglI GCCNNNNNGGC 1 cut(s) 495
Bme1390I CCNGG 3 cut(s) 454, 860, 899
Bme18I GGWCC 1 cut(s) 343
BmeT110I CYCGRG 1 cut(s) 188
BmgBI CACGTC 2 cut(s) 316, 442
BmgT120I GGNCC 4 cut(s) 343, 416, 672, 693
BmiI GGNNCC 3 cut(s) 36, 223, 499
BmrFI CCNGG 3 cut(s) 454, 860, 899
BmsI GCATC 3 cut(s) 114, 166, 318
BpiI GAAGAC 2 cut(s) 61, 629
BpmI CTGGAG 2 cut(s) 590, 881
Bpu10I CCTNAGC 1 cut(s) 654
BpuMI CCSGG 1 cut(s) 454
Bsa29I ATCGAT 1 cut(s) 353
BsaBI GATNNNNATC 1 cut(s) 25
BsaHI GRCGYC 1 cut(s) 249
BsaI GGTCTC 4 cut(s) 106, 587, 608, 629
BsaJI CCNNGG 5 cut(s) 145, 171, 557, 582, 696
BsaWI WCCGGW 1 cut(s) 31
BsaXI ACNNNNNCTCC 2 cut(s) 426, 456
Bsc4I CCNNNNNNNGG 2 cut(s) 218, 904
Bse118I RCCGGY 1 cut(s) 494
Bse1I ACTGG 1 cut(s) 91
Bse8I GATNNNNATC 1 cut(s) 25
BseBI CCWGG 2 cut(s) 860, 899
BseCI ATCGAT 1 cut(s) 353
BseDI CCNNGG 5 cut(s) 145, 171, 557, 582, 696
BseGI GGATG 4 cut(s) 181, 309, 318, 717
BseJI GATNNNNATC 1 cut(s) 25
BseLI CCNNNNNNNGG 2 cut(s) 218, 904
BseMII CTCAG 1 cut(s) 645
BseNI ACTGG 1 cut(s) 91
BseRI GAGGAG 8 cut(s) 35, 38, 41, 44, 349, 362, 374, 587
BseXI GCAGC 6 cut(s) 139, 153, 191, 286, 408, 922
BsgI GTGCAG 1 cut(s) 929
Bsh1236I CGCG 5 cut(s) 92, 132, 147, 185, 284
Bsh1285I CGRYCG 4 cut(s) 353, 472, 546, 856
BshFI GGCC 6 cut(s) 215, 417, 489, 659, 674, 695
BshNI GGYRCC 1 cut(s) 497
BshVI ATCGAT 1 cut(s) 353
BsiEI CGRYCG 4 cut(s) 353, 472, 546, 856
BsiHKCI CYCGRG 1 cut(s) 188
BsiSI CCGG 6 cut(s) 32, 212, 363, 432, 453, 495
BslI CCNNNNNNNGG 2 cut(s) 218, 904
BsmAI GTCTC 4 cut(s) 106, 587, 608, 629
BsnI GGCC 6 cut(s) 215, 417, 489, 659, 674, 695
Bso31I GGTCTC 4 cut(s) 106, 587, 608, 629
BsoBI CYCGRG 1 cut(s) 188
Bsp143I GATC 7 cut(s) 20, 198, 350, 354, 456, 853, 892
Bsp19I CCATGG 1 cut(s) 171
BspANI GGCC 6 cut(s) 215, 417, 489, 659, 674, 695
BspCNI CTCAG 1 cut(s) 646
BspDI ATCGAT 1 cut(s) 353
BspFNI CGCG 5 cut(s) 92, 132, 147, 185, 284
BspLI GGNNCC 3 cut(s) 36, 223, 499
BspMI ACCTGC 2 cut(s) 170, 959
BspPI GGATC 3 cut(s) 193, 464, 900
BspT107I GGYRCC 1 cut(s) 497
BspTNI GGTCTC 4 cut(s) 106, 587, 608, 629
BsrBI CCGCTC 1 cut(s) 421
BsrFI RCCGGY 1 cut(s) 494
BsrI ACTGG 1 cut(s) 91
BssAI RCCGGY 1 cut(s) 494
BssECI CCNNGG 5 cut(s) 145, 171, 557, 582, 696
BssMI GATC 7 cut(s) 20, 198, 350, 354, 456, 853, 892
BssNI GRCGYC 1 cut(s) 249
BssT1I CCWWGG 2 cut(s) 171, 557
Bst2UI CCWGG 2 cut(s) 860, 899
Bst4CI ACNGT 3 cut(s) 16, 67, 502
Bst6I CTCTTC 1 cut(s) 109
BstACI GRCGYC 1 cut(s) 249
BstAPI GCANNNNNTGC 1 cut(s) 133
BstC8I GCNNGC 3 cut(s) 134, 419, 496
BstDEI CTNAG 1 cut(s) 654
BstDSI CCRYGG 3 cut(s) 145, 171, 582
BstF5I GGATG 4 cut(s) 181, 309, 318, 717
BstFNI CGCG 5 cut(s) 92, 132, 147, 185, 284
BstHHI GCGC 4 cut(s) 92, 132, 187, 824
BstKTI GATC 7 cut(s) 23, 201, 353, 357, 459, 856, 895
BstMAI GTCTC 4 cut(s) 106, 587, 608, 629
BstMBI GATC 7 cut(s) 20, 198, 350, 354, 456, 853, 892
BstMCI CGRYCG 4 cut(s) 353, 472, 546, 856
BstMWI GCNNNNNNNGC 8 cut(s) 127, 133, 138, 147, 176, 402, 495, 749
BstNI CCWGG 2 cut(s) 860, 899
BstSCI CCNGG 3 cut(s) 452, 858, 897
BstUI CGCG 5 cut(s) 92, 132, 147, 185, 284
BstV1I GCAGC 6 cut(s) 139, 153, 191, 286, 408, 922
BstV2I GAAGAC 2 cut(s) 61, 629
BstX2I RGATCY 3 cut(s) 198, 456, 892
BstYI RGATCY 3 cut(s) 198, 456, 892
Bsu15I ATCGAT 1 cut(s) 353
BsuI GTATCC 1 cut(s) 940
BsuRI GGCC 6 cut(s) 215, 417, 489, 659, 674, 695
BsuTUI ATCGAT 1 cut(s) 353
BtgI CCRYGG 3 cut(s) 145, 171, 582
BtrI CACGTC 2 cut(s) 316, 442
BtsCI GGATG 4 cut(s) 181, 309, 318, 717
BveI ACCTGC 2 cut(s) 170, 959
Cac8I GCNNGC 3 cut(s) 134, 419, 496
CfoI GCGC 4 cut(s) 92, 132, 187, 824
Cfr10I RCCGGY 1 cut(s) 494
Cfr13I GGNCC 4 cut(s) 343, 416, 672, 693
Cfr42I CCGCGG 1 cut(s) 148
ClaI ATCGAT 1 cut(s) 353
CseI GACGC 3 cut(s) 81, 257, 273
Csp6I GTAC 3 cut(s) 115, 482, 523
CviAII CATG 2 cut(s) 172, 748
CviQI GTAC 3 cut(s) 115, 482, 523
DdeI CTNAG 1 cut(s) 654
DpnI GATC 7 cut(s) 22, 200, 352, 356, 458, 855, 894
DpnII GATC 7 cut(s) 20, 198, 350, 354, 456, 853, 892
DrdI GACNNNNNNGTC 1 cut(s) 91
DseDI GACNNNNNNGTC 1 cut(s) 91
EaeI YGGCCR 1 cut(s) 213
Eam1104I CTCTTC 1 cut(s) 109
EarI CTCTTC 1 cut(s) 109
EciI GGCGGA 2 cut(s) 317, 392
Eco130I CCWWGG 2 cut(s) 171, 557
Eco31I GGTCTC 4 cut(s) 106, 587, 608, 629
Eco47I GGWCC 1 cut(s) 343
Eco88I CYCGRG 1 cut(s) 188
EcoRII CCWGG 2 cut(s) 858, 897
EcoT14I CCWWGG 2 cut(s) 171, 557
ErhI CCWWGG 2 cut(s) 171, 557
FaeI CATG 2 cut(s) 175, 751
FaiI YATR 4 cut(s) 173, 564, 566, 749
FatI CATG 2 cut(s) 171, 747
FauI CCCGC 2 cut(s) 426, 865
FblI GTMKAC 1 cut(s) 438
FokI GGATG 4 cut(s) 188, 296, 305, 724
FspBI CTAG 1 cut(s) 797
GlaI GCGC 4 cut(s) 91, 131, 186, 823
GsuI CTGGAG 2 cut(s) 590, 881
HaeIII GGCC 6 cut(s) 215, 417, 489, 659, 674, 695
HapII CCGG 6 cut(s) 32, 212, 363, 432, 453, 495
HgaI GACGC 3 cut(s) 81, 257, 273
HhaI GCGC 4 cut(s) 92, 132, 187, 824
Hin1I GRCGYC 1 cut(s) 249
Hin1II CATG 2 cut(s) 175, 751
Hin6I GCGC 4 cut(s) 90, 130, 185, 822
HinP1I GCGC 4 cut(s) 90, 130, 185, 822
HincII GTYRAC 1 cut(s) 439
HindII GTYRAC 1 cut(s) 439
HpaII CCGG 6 cut(s) 32, 212, 363, 432, 453, 495
HphI GGTGA 7 cut(s) 4, 55, 151, 220, 400, 548, 562
Hpy166II GTNNAC 5 cut(s) 12, 439, 484, 523, 553
Hpy188I TCNGA 9 cut(s) 20, 39, 109, 343, 350, 425, 469, 682, 839
Hpy188III TCNNGA 2 cut(s) 82, 202
Hpy8I GTNNAC 5 cut(s) 12, 439, 484, 523, 553
Hpy99I CGWCG 5 cut(s) 97, 100, 113, 289, 443
HpyAV CCTTC 2 cut(s) 235, 883
HpyCH4III ACNGT 3 cut(s) 16, 67, 502
HpyCH4IV ACGT 2 cut(s) 315, 441
HpyCH4V TGCA 5 cut(s) 127, 165, 179, 910, 954
HpyF10VI GCNNNNNNNGC 8 cut(s) 127, 133, 138, 147, 176, 402, 495, 749
HpyF3I CTNAG 1 cut(s) 654
HpySE526I ACGT 2 cut(s) 315, 441
Hsp92I GRCGYC 1 cut(s) 249
Hsp92II CATG 2 cut(s) 175, 751
HspAI GCGC 4 cut(s) 90, 130, 185, 822
KroI GCCGGC 1 cut(s) 494
KroNI GCCGGC 1 cut(s) 496
KspI CCGCGG 1 cut(s) 148
Kzo9I GATC 7 cut(s) 20, 198, 350, 354, 456, 853, 892
LmnI GCTCC 5 cut(s) 227, 244, 309, 426, 835
Lsp1109I GCAGC 6 cut(s) 139, 153, 191, 286, 408, 922
LweI GCATC 3 cut(s) 114, 166, 318
MaeI CTAG 1 cut(s) 797
MaeII ACGT 2 cut(s) 315, 441
MaeIII GTNAC 1 cut(s) 61
MalI GATC 7 cut(s) 22, 200, 352, 356, 458, 855, 894
MbiI CCGCTC 1 cut(s) 421
MboI GATC 7 cut(s) 20, 198, 350, 354, 456, 853, 892
MboII GAAGA 6 cut(s) 61, 64, 96, 226, 451, 634
MfeI CAATTG 1 cut(s) 884
MflI RGATCY 3 cut(s) 198, 456, 892
MluCI AATT 1 cut(s) 884
MlyI GAGTC 3 cut(s) 435, 444, 686
MmeI TCCRAC 3 cut(s) 62, 132, 492
MroNI GCCGGC 1 cut(s) 494
MseI TTAA 1 cut(s) 846
MspA1I CMGCKG 1 cut(s) 147
MspI CCGG 6 cut(s) 32, 212, 363, 432, 453, 495
MspR9I CCNGG 3 cut(s) 454, 860, 899
MunI CAATTG 1 cut(s) 884
MvaI CCWGG 2 cut(s) 860, 899
MvnI CGCG 5 cut(s) 92, 132, 147, 185, 284
MwoI GCNNNNNNNGC 8 cut(s) 127, 133, 138, 147, 176, 402, 495, 749
NaeI GCCGGC 1 cut(s) 496
NciI CCSGG 1 cut(s) 454
NcoI CCATGG 1 cut(s) 171
NdeII GATC 7 cut(s) 20, 198, 350, 354, 456, 853, 892
NgoMIV GCCGGC 1 cut(s) 494
NlaIII CATG 2 cut(s) 175, 751
NlaIV GGNNCC 3 cut(s) 36, 223, 499
NmeAIII GCCGAG 2 cut(s) 700, 721
NmuCI GTSAC 1 cut(s) 61
PaeR7I CTCGAG 1 cut(s) 188
PaqCI CACCTGC 1 cut(s) 170
PcsI WCGNNNNNNNCGW 3 cut(s) 63, 435, 498
PdiI GCCGGC 1 cut(s) 496
PfeI GAWTC 7 cut(s) 299, 474, 505, 539, 774, 789, 960
PflMI CCANNNNNTGG 1 cut(s) 904
Ple19I CGATCG 2 cut(s) 353, 856
PleI GAGTC 3 cut(s) 434, 443, 685
PpsI GAGTC 3 cut(s) 434, 443, 685
Psp6I CCWGG 2 cut(s) 858, 897
PspGI CCWGG 2 cut(s) 858, 897
PspN4I GGNNCC 3 cut(s) 36, 223, 499
PspPI GGNCC 4 cut(s) 343, 416, 672, 693
PspXI VCTCGAGB 1 cut(s) 188
PsuI RGATCY 3 cut(s) 198, 456, 892
PvuI CGATCG 2 cut(s) 353, 856
RsaI GTAC 3 cut(s) 116, 483, 524
RsaNI GTAC 3 cut(s) 115, 482, 523
SacII CCGCGG 1 cut(s) 148
SalI GTCGAC 1 cut(s) 437
SaqAI TTAA 1 cut(s) 846
Sau3AI GATC 7 cut(s) 20, 198, 350, 354, 456, 853, 892
Sau96I GGNCC 4 cut(s) 343, 416, 672, 693
SchI GAGTC 3 cut(s) 435, 444, 686
ScrFI CCNGG 3 cut(s) 454, 860, 899
SfaNI GCATC 3 cut(s) 114, 166, 318
Sfr274I CTCGAG 1 cut(s) 188
Sfr303I CCGCGG 1 cut(s) 148
SgrBI CCGCGG 1 cut(s) 148
SinI GGWCC 1 cut(s) 343
SlaI CTCGAG 1 cut(s) 188
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
Sse9I AATT 1 cut(s) 884
SspMI CTAG 1 cut(s) 797
StyD4I CCNGG 3 cut(s) 452, 858, 897
StyI CCWWGG 2 cut(s) 171, 557
TaaI ACNGT 3 cut(s) 16, 67, 502
TaiI ACGT 2 cut(s) 318, 444
TaqI TCGA 3 cut(s) 189, 353, 438
TaqII GACCGA 6 cut(s) 88, 486, 532, 611, 632, 653
TasI AATT 1 cut(s) 884
TatI WGTACW 1 cut(s) 522
TauI GCSGC 6 cut(s) 8, 147, 150, 185, 534, 590
TfiI GAWTC 7 cut(s) 299, 474, 505, 539, 774, 789, 960
Tru1I TTAA 1 cut(s) 846
Tru9I TTAA 1 cut(s) 846
TseFI GTSAC 1 cut(s) 61
TseI GCWGC 6 cut(s) 127, 141, 179, 274, 396, 910
Tsp45I GTSAC 1 cut(s) 61
Van91I CCANNNNNTGG 1 cut(s) 904
VpaK11BI GGWCC 1 cut(s) 343
XhoI CTCGAG 1 cut(s) 188
XmiI GTMKAC 1 cut(s) 438
XspI CTAG 1 cut(s) 797
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.