Rw7G030520

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0008590
Physical Location & Seq
Forward (+)
43321535 .. 43322449
915 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G030520.1

Sequence Viewer

Length: 915 bp
ATGCAGCGCGTGCTCCGCAACCACGGCTACAATCTGATCTGCAACGCCATGGCCACCTCTGACCTCCAGTACGAGCTCCTCACGCTCCCGCCCAACGCCTCCTTCACCGTCTTCGCTCCCACCGACGCCTCCCTCTTCGCGCTCGACATGATCCAAACGGCGTCGTATTACATCGACACCCTCCGCGTCCACGTCGTCCCTCTCCGCTTCTCTGTCTCCGACCTCCGATCTATCTCCTCCGGCTCCATCCTCCCCACGCTCCTCCCCTACAGAGCTCTCCGCCTCTCCACAGATCCCCTCGCCGTCTCCGGCGTCGACGTCGTTTTGCCCGGCCTTTTCTACTCTCGCCGCGTCGCCGTCCACGGCCTCGGAGGCATCGTCAGTCTCAGCTCTGTCGTTCCCTACGGTTCTCATCTTCAGGCCAGTGCTCCCGTCGCAAGCGGCGGCGCCGATATGGTCGCGCCCTTGAAAACTGTGTCCAACCGCACAGATCTCTCTCCGGCGGCCACACCACCGTCCGAAGCCGTGTCGCTCATGAATGCTCATTCCAACGGGACGGCCAGCGCTGATCTTTCTCCGGTTGTAGCTGAGTCGCCGGTGACCACTGCATCTCCATCTCAGCCGACTGACTCGATGGCTTCCGAAGATACTCCGTCGGCATCTCCACCGTCACCGTCGGCCGATTCAGTACCGGAAAGAGCTAGGGCTTTGTTGATGGAGATTCCAGACGGCAATTCCGACTCCGAGGGTGATGAAATTTCCGAGAAATCGCCACTGCTGATGGAAGCGCAAGCGGTTGGTGAGGTGAAGAAATGTGGAGCGTTGGATGAGATGACCATTGACTGCTTTGTGCCTGAAGACGGGGATGGACTAGAAAAGCTCAGCCTTCAGCGTCTGGTTCGAGCTTTGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

304

Amino Acids

31.86

Weight (kDa)

4.6

Isoelectric Point (pI)

51.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 321
AccB1I GGYRCC 1 cut(s) 446
AccI GTMKAC 1 cut(s) 315
AccII CGCG 5 cut(s) 9, 140, 186, 351, 461
AclWI GGATC 2 cut(s) 145, 287
AcoI YGGCCR 4 cut(s) 51, 504, 558, 678
AcsI RAATTY 1 cut(s) 756
AcuI CTGAAG 3 cut(s) 401, 872, 876
AcyI GRCGYC 5 cut(s) 126, 161, 312, 318, 447
AfaI GTAC 2 cut(s) 71, 690
AfeI AGCGCT 1 cut(s) 565
AfiI CCNNNNNNNGG 1 cut(s) 860
AgsI TTSAA 1 cut(s) 469
AjiI CACGTC 1 cut(s) 193
AjuI GAANNNNNNNTTGG 2 cut(s) 86, 118
AluBI AGCT 7 cut(s) 76, 275, 390, 587, 701, 880, 905
AluI AGCT 7 cut(s) 76, 275, 390, 587, 701, 880, 905
Alw21I GWGCWC 4 cut(s) 15, 78, 277, 430
Alw26I GTCTC 3 cut(s) 220, 310, 389
AlwI GGATC 2 cut(s) 145, 287
AlwNI CAGNNNCTG 1 cut(s) 895
Aor51HI AGCGCT 1 cut(s) 565
AoxI GGCC 7 cut(s) 51, 331, 364, 420, 504, 558, 678
ApeKI GCWGC 1 cut(s) 4
ApoI RAATTY 1 cut(s) 756
AspLEI GCGC 6 cut(s) 9, 142, 449, 463, 566, 790
AsuC2I CCSGG 1 cut(s) 330
AsuHPI GGTGA 6 cut(s) 97, 610, 663, 761, 812, 817
BalI TGGCCA 1 cut(s) 53
BanI GGYRCC 1 cut(s) 446
BanII GRGCYC 2 cut(s) 78, 277
BbsI GAAGAC 2 cut(s) 103, 864
Bbv12I GWGCWC 4 cut(s) 15, 78, 277, 430
BbvI GCAGC 1 cut(s) 16
BccI CCATC 6 cut(s) 254, 622, 628, 709, 775, 860
BceAI ACGGC 8 cut(s) 40, 174, 287, 341, 379, 509, 573, 745
BcnI CCSGG 1 cut(s) 330
BcoDI GTCTC 3 cut(s) 220, 310, 389
BfaI CTAG 2 cut(s) 702, 872
BfmI CTRYAG 1 cut(s) 268
BfoI RGCGCY 2 cut(s) 450, 567
BglI GCCNNNNNGGC 1 cut(s) 372
BglII AGATCT 1 cut(s) 490
BisI GCNGC 5 cut(s) 5, 349, 442, 445, 504
BlpI GCTNAGC 1 cut(s) 881
BlsI GCNGC 5 cut(s) 6, 350, 443, 446, 505
Bme1390I CCNGG 1 cut(s) 330
BmgBI CACGTC 1 cut(s) 193
BmiI GGNNCC 2 cut(s) 244, 448
BmrFI CCNGG 1 cut(s) 330
BmsI GCATC 3 cut(s) 384, 617, 668
BpiI GAAGAC 2 cut(s) 103, 864
BpmI CTGGAG 1 cut(s) 50
Bpu1102I GCTNAGC 1 cut(s) 881
BpuMI CCSGG 1 cut(s) 330
BsaHI GRCGYC 5 cut(s) 126, 161, 312, 318, 447
BsaJI CCNNGG 5 cut(s) 22, 48, 361, 367, 744
BsaWI WCCGGW 2 cut(s) 577, 691
BsaXI ACNNNNNCTCC 4 cut(s) 363, 393, 595, 625
Bsc4I CCNNNNNNNGG 1 cut(s) 860
Bse118I RCCGGY 1 cut(s) 595
Bse1I ACTGG 2 cut(s) 67, 423
BseDI CCNNGG 5 cut(s) 22, 48, 361, 367, 744
BseGI GGATG 3 cut(s) 246, 832, 871
BseLI CCNNNNNNNGG 1 cut(s) 860
BseMII CTCAG 4 cut(s) 400, 579, 632, 895
BseNI ACTGG 2 cut(s) 67, 423
BseRI GAGGAG 3 cut(s) 68, 226, 251
BseX3I CGGCCG 1 cut(s) 678
BseXI GCAGC 1 cut(s) 16
Bsh1236I CGCG 5 cut(s) 9, 140, 186, 351, 461
Bsh1285I CGRYCG 1 cut(s) 681
BshFI GGCC 7 cut(s) 53, 333, 366, 422, 506, 560, 680
BshNI GGYRCC 1 cut(s) 446
BsiEI CGRYCG 1 cut(s) 681
BsiHKAI GWGCWC 4 cut(s) 15, 78, 277, 430
BsiSI CCGG 7 cut(s) 240, 309, 330, 500, 578, 596, 692
BslFI GGGAC 2 cut(s) 182, 568
BslI CCNNNNNNNGG 1 cut(s) 860
BsmAI GTCTC 3 cut(s) 220, 310, 389
BsmBI CGTCTC 1 cut(s) 310
BsmFI GGGAC 2 cut(s) 182, 568
BsmI GAATGC 1 cut(s) 544
BsnI GGCC 7 cut(s) 53, 333, 366, 422, 506, 560, 680
Bsp1286I GDGCHC 4 cut(s) 15, 78, 277, 430
Bsp143I GATC 6 cut(s) 36, 150, 227, 292, 490, 568
Bsp1720I GCTNAGC 1 cut(s) 881
Bsp19I CCATGG 1 cut(s) 48
BspANI GGCC 7 cut(s) 53, 333, 366, 422, 506, 560, 680
BspCNI CTCAG 4 cut(s) 399, 580, 631, 894
BspFNI CGCG 5 cut(s) 9, 140, 186, 351, 461
BspHI TCATGA 1 cut(s) 534
BspLI GGNNCC 2 cut(s) 244, 448
BspPI GGATC 2 cut(s) 145, 287
BspT107I GGYRCC 1 cut(s) 446
BsrFI RCCGGY 1 cut(s) 595
BsrI ACTGG 2 cut(s) 67, 423
BssAI RCCGGY 1 cut(s) 595
BssECI CCNNGG 5 cut(s) 22, 48, 361, 367, 744
BssMI GATC 6 cut(s) 36, 150, 227, 292, 490, 568
BssNI GRCGYC 5 cut(s) 126, 161, 312, 318, 447
BssT1I CCWWGG 1 cut(s) 48
Bst4CI ACNGT 6 cut(s) 109, 407, 475, 516, 669, 675
Bst6I CTCTTC 1 cut(s) 140
BstACI GRCGYC 5 cut(s) 126, 161, 312, 318, 447
BstAPI GCANNNNNTGC 1 cut(s) 10
BstC8I GCNNGC 4 cut(s) 11, 439, 562, 792
BstDEI CTNAG 4 cut(s) 386, 588, 618, 881
BstDSI CCRYGG 3 cut(s) 22, 48, 361
BstEII GGTNACC 1 cut(s) 598
BstF5I GGATG 3 cut(s) 246, 832, 871
BstFNI CGCG 5 cut(s) 9, 140, 186, 351, 461
BstH2I RGCGCY 2 cut(s) 450, 567
BstHHI GCGC 6 cut(s) 9, 142, 449, 463, 566, 790
BstKTI GATC 6 cut(s) 39, 153, 230, 295, 493, 571
BstMAI GTCTC 3 cut(s) 220, 310, 389
BstMBI GATC 6 cut(s) 36, 150, 227, 292, 490, 568
BstMCI CGRYCG 1 cut(s) 681
BstMWI GCNNNNNNNGC 6 cut(s) 10, 15, 24, 82, 372, 434
BstPI GGTNACC 1 cut(s) 598
BstSCI CCNGG 1 cut(s) 328
BstSFI CTRYAG 1 cut(s) 268
BstUI CGCG 5 cut(s) 9, 140, 186, 351, 461
BstV1I GCAGC 1 cut(s) 16
BstV2I GAAGAC 2 cut(s) 103, 864
BstX2I RGATCY 2 cut(s) 292, 490
BstYI RGATCY 2 cut(s) 292, 490
BstZI CGGCCG 1 cut(s) 678
BsuRI GGCC 7 cut(s) 53, 333, 366, 422, 506, 560, 680
BtgI CCRYGG 3 cut(s) 22, 48, 361
BtrI CACGTC 1 cut(s) 193
BtsCI GGATG 3 cut(s) 246, 832, 871
BtsI GCAGTG 2 cut(s) 603, 773
BtsIMutI CAGTG 3 cut(s) 430, 603, 773
Cac8I GCNNGC 4 cut(s) 11, 439, 562, 792
CaiI CAGNNNCTG 1 cut(s) 895
CciI TCATGA 1 cut(s) 534
CfoI GCGC 6 cut(s) 9, 142, 449, 463, 566, 790
Cfr10I RCCGGY 1 cut(s) 595
CseI GACGC 6 cut(s) 134, 150, 175, 301, 340, 881
Csp6I GTAC 2 cut(s) 70, 689
CviAII CATG 3 cut(s) 49, 148, 535
CviQI GTAC 2 cut(s) 70, 689
DdeI CTNAG 4 cut(s) 386, 588, 618, 881
DinI GGCGCC 1 cut(s) 448
DpnI GATC 6 cut(s) 38, 152, 229, 294, 492, 570
DpnII GATC 6 cut(s) 36, 150, 227, 292, 490, 568
EaeI YGGCCR 4 cut(s) 51, 504, 558, 678
EagI CGGCCG 1 cut(s) 678
Eam1104I CTCTTC 1 cut(s) 140
EarI CTCTTC 1 cut(s) 140
EciI GGCGGA 1 cut(s) 269
Ecl136II GAGCTC 2 cut(s) 76, 275
EclXI CGGCCG 1 cut(s) 678
Eco130I CCWWGG 1 cut(s) 48
Eco24I GRGCYC 2 cut(s) 78, 277
Eco47III AGCGCT 1 cut(s) 565
Eco52I CGGCCG 1 cut(s) 678
Eco53kI GAGCTC 2 cut(s) 76, 275
Eco57I CTGAAG 3 cut(s) 401, 872, 876
Eco91I GGTNACC 1 cut(s) 598
EcoICRI GAGCTC 2 cut(s) 76, 275
EcoO65I GGTNACC 1 cut(s) 598
EcoT14I CCWWGG 1 cut(s) 48
EcoT38I GRGCYC 2 cut(s) 78, 277
EgeI GGCGCC 1 cut(s) 448
EheI GGCGCC 1 cut(s) 448
ErhI CCWWGG 1 cut(s) 48
Esp3I CGTCTC 1 cut(s) 310
FaeI CATG 3 cut(s) 52, 151, 538
FaiI YATR 4 cut(s) 50, 149, 455, 536
FaqI GGGAC 2 cut(s) 182, 568
FatI CATG 3 cut(s) 48, 147, 534
FauI CCCGC 1 cut(s) 96
FblI GTMKAC 1 cut(s) 315
Fnu4HI GCNGC 5 cut(s) 5, 349, 442, 445, 504
FokI GGATG 3 cut(s) 233, 839, 878
FriOI GRGCYC 2 cut(s) 78, 277
Fsp4HI GCNGC 5 cut(s) 5, 349, 442, 445, 504
FspBI CTAG 2 cut(s) 702, 872
GlaI GCGC 6 cut(s) 8, 141, 448, 462, 565, 789
GluI GCNGC 5 cut(s) 5, 349, 442, 445, 504
GsuI CTGGAG 1 cut(s) 50
HaeII RGCGCY 2 cut(s) 450, 567
HaeIII GGCC 7 cut(s) 53, 333, 366, 422, 506, 560, 680
HapII CCGG 7 cut(s) 240, 309, 330, 500, 578, 596, 692
HgaI GACGC 6 cut(s) 134, 150, 175, 301, 340, 881
HhaI GCGC 6 cut(s) 9, 142, 449, 463, 566, 790
Hin1I GRCGYC 5 cut(s) 126, 161, 312, 318, 447
Hin1II CATG 3 cut(s) 52, 151, 538
Hin6I GCGC 6 cut(s) 7, 140, 447, 461, 564, 788
HinP1I GCGC 6 cut(s) 7, 140, 447, 461, 564, 788
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HinfI GANTC 5 cut(s) 590, 629, 683, 721, 740
HpaII CCGG 7 cut(s) 240, 309, 330, 500, 578, 596, 692
HphI GGTGA 6 cut(s) 97, 610, 663, 761, 812, 817
Hpy166II GTNNAC 3 cut(s) 190, 316, 361
Hpy188III TCNNGA 2 cut(s) 535, 725
Hpy8I GTNNAC 3 cut(s) 190, 316, 361
HpyAV CCTTC 2 cut(s) 112, 896
HpyCH4III ACNGT 6 cut(s) 109, 407, 475, 516, 669, 675
HpyCH4IV ACGT 2 cut(s) 192, 318
HpyCH4V TGCA 3 cut(s) 4, 42, 608
HpyF10VI GCNNNNNNNGC 6 cut(s) 10, 15, 24, 82, 372, 434
HpyF3I CTNAG 4 cut(s) 386, 588, 618, 881
HpySE526I ACGT 2 cut(s) 192, 318
Hsp92I GRCGYC 5 cut(s) 126, 161, 312, 318, 447
Hsp92II CATG 3 cut(s) 52, 151, 538
HspAI GCGC 6 cut(s) 7, 140, 447, 461, 564, 788
KasI GGCGCC 1 cut(s) 446
Kzo9I GATC 6 cut(s) 36, 150, 227, 292, 490, 568
LmnI GCTCC 8 cut(s) 18, 81, 90, 121, 248, 264, 433, 818
Lsp1109I GCAGC 1 cut(s) 16
LweI GCATC 3 cut(s) 384, 617, 668
MaeI CTAG 2 cut(s) 702, 872
MaeII ACGT 2 cut(s) 192, 318
MaeIII GTNAC 2 cut(s) 598, 669
MalI GATC 6 cut(s) 38, 152, 229, 294, 492, 570
MboI GATC 6 cut(s) 36, 150, 227, 292, 490, 568
MboII GAAGA 6 cut(s) 103, 127, 407, 656, 820, 869
MflI RGATCY 2 cut(s) 292, 490
MhlI GDGCHC 4 cut(s) 15, 78, 277, 430
MlsI TGGCCA 1 cut(s) 53
MluCI AATT 2 cut(s) 733, 756
MluNI TGGCCA 1 cut(s) 53
Mly113I GGCGCC 1 cut(s) 447
MlyI GAGTC 3 cut(s) 599, 623, 734
MmeI TCCRAC 5 cut(s) 243, 504, 573, 762, 804
Mox20I TGGCCA 1 cut(s) 53
MscI TGGCCA 1 cut(s) 53
MseI TTAA 1 cut(s) 913
Msp20I TGGCCA 1 cut(s) 53
MspI CCGG 7 cut(s) 240, 309, 330, 500, 578, 596, 692
MspR9I CCNGG 1 cut(s) 330
Mva1269I GAATGC 1 cut(s) 544
MvnI CGCG 5 cut(s) 9, 140, 186, 351, 461
MwoI GCNNNNNNNGC 6 cut(s) 10, 15, 24, 82, 372, 434
NarI GGCGCC 1 cut(s) 447
NciI CCSGG 1 cut(s) 330
NcoI CCATGG 1 cut(s) 48
NdeII GATC 6 cut(s) 36, 150, 227, 292, 490, 568
NlaIII CATG 3 cut(s) 52, 151, 538
NlaIV GGNNCC 2 cut(s) 244, 448
NmuCI GTSAC 2 cut(s) 598, 669
PagI TCATGA 1 cut(s) 534
PcsI WCGNNNNNNNCGW 3 cut(s) 120, 375, 735
PctI GAATGC 1 cut(s) 544
PfeI GAWTC 2 cut(s) 683, 721
PkrI GCNGC 5 cut(s) 6, 350, 443, 446, 505
PleI GAGTC 3 cut(s) 598, 623, 734
PluTI GGCGCC 1 cut(s) 450
PpsI GAGTC 3 cut(s) 598, 623, 734
Psp124BI GAGCTC 2 cut(s) 78, 277
PspEI GGTNACC 1 cut(s) 598
PspN4I GGNNCC 2 cut(s) 244, 448
PstNI CAGNNNCTG 1 cut(s) 895
PsuI RGATCY 2 cut(s) 292, 490
RsaI GTAC 2 cut(s) 71, 690
RsaNI GTAC 2 cut(s) 70, 689
SacI GAGCTC 2 cut(s) 78, 277
SalI GTCGAC 1 cut(s) 314
SaqAI TTAA 1 cut(s) 913
SatI GCNGC 5 cut(s) 5, 349, 442, 445, 504
Sau3AI GATC 6 cut(s) 36, 150, 227, 292, 490, 568
SchI GAGTC 3 cut(s) 599, 623, 734
ScrFI CCNGG 1 cut(s) 330
SduI GDGCHC 4 cut(s) 15, 78, 277, 430
SfaNI GCATC 3 cut(s) 384, 617, 668
SfcI CTRYAG 1 cut(s) 268
SfoI GGCGCC 1 cut(s) 448
SgrAI CRCCGGYG 1 cut(s) 595
SgrDI CGTCGACG 1 cut(s) 314
Sse9I AATT 2 cut(s) 733, 756
SspDI GGCGCC 1 cut(s) 446
SspMI CTAG 2 cut(s) 702, 872
SstI GAGCTC 2 cut(s) 78, 277
StyD4I CCNGG 1 cut(s) 328
StyI CCWWGG 1 cut(s) 48
TaaI ACNGT 6 cut(s) 109, 407, 475, 516, 669, 675
TaiI ACGT 2 cut(s) 195, 321
TaqI TCGA 5 cut(s) 144, 174, 315, 632, 901
TasI AATT 2 cut(s) 733, 756
TauI GCSGC 4 cut(s) 351, 444, 447, 506
TfiI GAWTC 2 cut(s) 683, 721
Tru1I TTAA 1 cut(s) 913
Tru9I TTAA 1 cut(s) 913
TscAI CASTG 3 cut(s) 430, 610, 780
TseFI GTSAC 2 cut(s) 598, 669
TseI GCWGC 1 cut(s) 4
Tsp45I GTSAC 2 cut(s) 598, 669
TspDTI ATGAA 2 cut(s) 551, 768
TspGWI ACGGA 1 cut(s) 642
TspRI CASTG 3 cut(s) 430, 610, 780
XapI RAATTY 1 cut(s) 756
XmiI GTMKAC 1 cut(s) 315
XspI CTAG 2 cut(s) 702, 872
ZraI GACGTC 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.