Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0008590

Physical Location & Seq

Genomic Coordinates Forward (+)

3865106 .. 3866370

Gene Structure 1265 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g04910.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGCAAGGAAGGGTATTATCGTCCCAAAGCGAGAGTATAAATACAGACCCCAGTCCCAGGTTTGTTACAGAATCTGAAACCTCTCCATACTCTCTCTCTCCTCTCTCTCTCAGCTCCCATGGCGGTCCAACCGCTCTCACTCCTCCTCTTTGCCGTCGCCGTCTTACTCAGTTTTCCGAGGTGCGCGGCGTCGCTCTCATCTCTGGACTACGAGTCATGGAGCCCGTGCTCCGCAGCCACGGCTACAACTTGTTCTACGACGCCATGGCCGCCGCCTCCGACGTCACGCTTCCGCCCAACGCCACCTTCACCATCTTCGCTGCCAGCGACGCCTCCCTTCTCGCCCTCCACATCGACATTCTCGTCCATGTGGTGCCTCTGCGCCTCTCACTCTCAGACCTGCGGTCTATCTCCTCCGGCTCCATCCTCCCCACTCTCCTCCCCTACACCGCCCTCCGCCTCACCACCGACCCCCTCCAAGTCGCCGGAGTCGATGTCGCCTTGCCCGGCCTTTTCTACTCTCGCCGTGTCGCCGTCCACGGCCTCGCCGGCGTCATGACCTCTGTGATTCGTCTGGATCCCGTCGCGCCATCTCCGGCGGCCACACTACCGGAAATCAGGAGATATCTGGGGGAGAAGAACTCCACGAACTCCACAGCAACAAGCGATAAGAGTAAGAAATGGGTGACAGCCGATAAAGTCCTGTGTGCTTTGATTGTCATCGCAATCTTGAGTCTCGCTGGTGCTGTGTACTGGGGCTTGGTATGGTTAGGTCTTATCTGCGATGCGAAGTGCGAGAAAAGGTTCGGCGATCTGAAAGGGAAGAACGAGCTGAGTAAGAAGGAAATCACAGATTTGAAACAGCTGAAGTCTTATGTGGATGATATGGCTAAGGCGGATTTGACTACTCTGTTGGAGGCCAAGAAGGCCGAGGCTCAGGCGGCTGCTGCTGCTGCTCTGGCCGCTTCTCTGGACGCGGACGATGCACGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

331

Amino Acids

35.23

Weight (kDa)

8.27

Isoelectric Point (pI)

46.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008590)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15190
fragaria_vesca	FvH4_2g02380 FvH4_2g02450 FvH4_2g04910 FvH4_3g08610 FvH4_4g13350 FvH4_4g36540 FvH4_4g36551 FvH4_5g29740
malus_domestica	MD15G1420000.v1.1
prunus_persica	Prupe.1G566000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0223241 RchiOBHm_Chr7g0223251
rosa_laevigata	RLG00000001997
rosa_multiflora	Rmu_co8206110.1_g000001 Rmu_sc0002192.1_g000007 Rmu_sc0009034.1_g000005
rosa_roxburghii	Rroxscaffold_3G00236010
rosa_rugosa	Rorug07G0213800
rosa_samantha	Rh1AG061200 Rh2CG525600 Rh7DG354200
rosa_wichuraiana	Rw7G030520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	362
AatII	GACGTC	1 cut(s)	285
Acc36I	ACCTGC	1 cut(s)	408
AccB1I	GGYRCC	1 cut(s)	373
AccBSI	CCGCTC	1 cut(s)	134
AccII	CGCG	3 cut(s)	186, 587, 977
AclWI	GGATC	2 cut(s)	572, 585
AcoI	YGGCCR	3 cut(s)	267, 600, 960
AcuI	CTGAAG	1 cut(s)	887
AcyI	GRCGYC	5 cut(s)	189, 261, 282, 330, 552
AfaI	GTAC	1 cut(s)	752
AfiI	CCNNNNNNNGG	1 cut(s)	57
AgsI	TTSAA	1 cut(s)	859
AhdI	GACNNNNNGTC	2 cut(s)	212, 403
AjnI	CCWGG	1 cut(s)	56
AjuI	GAANNNNNNNTTGG	2 cut(s)	290, 322
AluBI	AGCT	3 cut(s)	114, 832, 865
AluI	AGCT	3 cut(s)	114, 832, 865
Alw21I	GWGCWC	1 cut(s)	231
Alw26I	GTCTC	1 cut(s)	740
AlwI	GGATC	2 cut(s)	572, 585
AlwNI	CAGNNNCTG	1 cut(s)	74
AoxI	GGCC	7 cut(s)	267, 508, 541, 600, 918, 927, 960
ApeKI	GCWGC	6 cut(s)	234, 320, 944, 947, 950, 953
Asp700I	GAANNNNTTC	1 cut(s)	803
AspLEI	GCGC	3 cut(s)	186, 384, 589
AspS9I	GGNCC	1 cut(s)	125
AsuC2I	CCSGG	1 cut(s)	507
AsuHPI	GGTGA	3 cut(s)	301, 454, 697
AvaII	GGWCC	1 cut(s)	125
BamHI	GGATCC	1 cut(s)	577
BanI	GGYRCC	1 cut(s)	373
BanII	GRGCYC	1 cut(s)	225
Bbv12I	GWGCWC	1 cut(s)	231
BbvI	GCAGC	6 cut(s)	246, 307, 931, 934, 937, 940
BccI	CCATC	3 cut(s)	320, 431, 598
BceAI	ACGGC	6 cut(s)	138, 144, 256, 510, 518, 556
BciT130I	CCWGG	1 cut(s)	58
BcnI	CCSGG	1 cut(s)	507
BcoDI	GTCTC	1 cut(s)	740
BfuAI	ACCTGC	1 cut(s)	408
BglI	GCCNNNNNGGC	2 cut(s)	549, 926
Bme1390I	CCNGG	2 cut(s)	58, 507
Bme18I	GGWCC	1 cut(s)	125
BmeRI	GACNNNNNGTC	2 cut(s)	212, 403
BmgT120I	GGNCC	1 cut(s)	125
BmiI	GGNNCC	4 cut(s)	222, 375, 421, 579
BmrFI	CCNGG	2 cut(s)	58, 507
BmrI	ACTGGG	2 cut(s)	45, 763
BmsI	GCATC	2 cut(s)	775, 973
BmuI	ACTGGG	2 cut(s)	45, 763
BoxI	GACNNNNGTC	1 cut(s)	51
BplI	GAGNNNNNCTC	2 cut(s)	626, 658
Bpu10I	CCTNAGC	2 cut(s)	891, 936
BpuEI	CTTGAG	1 cut(s)	751
BpuMI	CCSGG	1 cut(s)	507
BsaBI	GATNNNNATC	1 cut(s)	719
BsaHI	GRCGYC	5 cut(s)	189, 261, 282, 330, 552
BsaJI	CCNNGG	7 cut(s)	56, 118, 177, 238, 264, 538, 930
BsaWI	WCCGGW	1 cut(s)	610
BsaXI	ACNNNNNCTCC	2 cut(s)	480, 510
Bsc4I	CCNNNNNNNGG	1 cut(s)	57
Bse118I	RCCGGY	1 cut(s)	548
Bse1I	ACTGG	2 cut(s)	51, 758
Bse8I	GATNNNNATC	1 cut(s)	719
BseBI	CCWGG	1 cut(s)	58
BseDI	CCNNGG	7 cut(s)	56, 118, 177, 238, 264, 538, 930
BseGI	GGATG	2 cut(s)	423, 886
BseJI	GATNNNNATC	1 cut(s)	719
BseLI	CCNNNNNNNGG	1 cut(s)	57
BseMII	CTCAG	5 cut(s)	124, 182, 408, 824, 950
BseNI	ACTGG	2 cut(s)	51, 758
BseRI	GAGGAG	5 cut(s)	90, 132, 135, 403, 428
BseXI	GCAGC	6 cut(s)	246, 307, 931, 934, 937, 940
Bsh1236I	CGCG	3 cut(s)	186, 587, 977
BshFI	GGCC	7 cut(s)	269, 510, 543, 602, 920, 929, 962
BshNI	GGYRCC	1 cut(s)	373
BsiHKAI	GWGCWC	1 cut(s)	231
BsiSI	CCGG	6 cut(s)	417, 486, 507, 549, 596, 611
BslFI	GGGAC	2 cut(s)	7, 39
BslI	CCNNNNNNNGG	1 cut(s)	57
BsmAI	GTCTC	1 cut(s)	740
BsmFI	GGGAC	2 cut(s)	7, 39
BsnI	GGCC	7 cut(s)	269, 510, 543, 602, 920, 929, 962
Bsp1286I	GDGCHC	2 cut(s)	225, 231
Bsp143I	GATC	2 cut(s)	577, 811
Bsp19I	CCATGG	2 cut(s)	118, 264
BspANI	GGCC	7 cut(s)	269, 510, 543, 602, 920, 929, 962
BspCNI	CTCAG	5 cut(s)	123, 181, 407, 825, 949
BspFNI	CGCG	3 cut(s)	186, 587, 977
BspHI	TCATGA	1 cut(s)	555
BspLI	GGNNCC	4 cut(s)	222, 375, 421, 579
BspMI	ACCTGC	1 cut(s)	408
BspPI	GGATC	2 cut(s)	572, 585
BspT107I	GGYRCC	1 cut(s)	373
BsrBI	CCGCTC	1 cut(s)	134
BsrFI	RCCGGY	1 cut(s)	548
BsrI	ACTGG	2 cut(s)	51, 758
BssAI	RCCGGY	1 cut(s)	548
BssECI	CCNNGG	7 cut(s)	56, 118, 177, 238, 264, 538, 930
BssMI	GATC	2 cut(s)	577, 811
BssNI	GRCGYC	5 cut(s)	189, 261, 282, 330, 552
BssT1I	CCWWGG	2 cut(s)	118, 264
Bst2UI	CCWGG	1 cut(s)	58
BstACI	GRCGYC	5 cut(s)	189, 261, 282, 330, 552
BstC8I	GCNNGC	2 cut(s)	325, 550
BstDEI	CTNAG	6 cut(s)	110, 168, 394, 833, 891, 936
BstDSI	CCRYGG	4 cut(s)	118, 238, 264, 538
BstF5I	GGATG	2 cut(s)	423, 886
BstFNI	CGCG	3 cut(s)	186, 587, 977
BstHHI	GCGC	3 cut(s)	186, 384, 589
BstKTI	GATC	2 cut(s)	580, 814
BstMAI	GTCTC	1 cut(s)	740
BstMBI	GATC	2 cut(s)	577, 811
BstNI	CCWGG	1 cut(s)	58
BstPAI	GACNNNNGTC	1 cut(s)	51
BstSCI	CCNGG	2 cut(s)	56, 505
BstUI	CGCG	3 cut(s)	186, 587, 977
BstV1I	GCAGC	6 cut(s)	246, 307, 931, 934, 937, 940
BstX2I	RGATCY	1 cut(s)	577
BstYI	RGATCY	1 cut(s)	577
BsuRI	GGCC	7 cut(s)	269, 510, 543, 602, 920, 929, 962
BtgI	CCRYGG	4 cut(s)	118, 238, 264, 538
BtgZI	GCGATG	2 cut(s)	706, 798
BtsCI	GGATG	2 cut(s)	423, 886
BveI	ACCTGC	1 cut(s)	408
Cac8I	GCNNGC	2 cut(s)	325, 550
CaiI	CAGNNNCTG	1 cut(s)	74
CciI	TCATGA	1 cut(s)	555
CfoI	GCGC	3 cut(s)	186, 384, 589
Cfr10I	RCCGGY	1 cut(s)	548
Cfr13I	GGNCC	1 cut(s)	125
CseI	GACGC	5 cut(s)	178, 269, 338, 541, 983
Csp6I	GTAC	1 cut(s)	751
CviAII	CATG	5 cut(s)	119, 217, 265, 368, 556
CviQI	GTAC	1 cut(s)	751
DdeI	CTNAG	6 cut(s)	110, 168, 394, 833, 891, 936
DpnI	GATC	2 cut(s)	579, 813
DpnII	GATC	2 cut(s)	577, 811
DrdI	GACNNNNNNGTC	1 cut(s)	362
DriI	GACNNNNNGTC	2 cut(s)	212, 403
DseDI	GACNNNNNNGTC	1 cut(s)	362
EaeI	YGGCCR	3 cut(s)	267, 600, 960
Eam1105I	GACNNNNNGTC	2 cut(s)	212, 403
EciI	GGCGGA	3 cut(s)	282, 446, 911
Eco130I	CCWWGG	2 cut(s)	118, 264
Eco24I	GRGCYC	1 cut(s)	225
Eco32I	GATATC	1 cut(s)	626
Eco47I	GGWCC	1 cut(s)	125
Eco57I	CTGAAG	1 cut(s)	887
EcoRII	CCWGG	1 cut(s)	56
EcoRV	GATATC	1 cut(s)	626
EcoT14I	CCWWGG	2 cut(s)	118, 264
EcoT38I	GRGCYC	1 cut(s)	225
ErhI	CCWWGG	2 cut(s)	118, 264
FaeI	CATG	5 cut(s)	122, 220, 268, 371, 559
FaqI	GGGAC	2 cut(s)	7, 39
FatI	CATG	5 cut(s)	118, 216, 264, 367, 555
FokI	GGATG	2 cut(s)	410, 893
FriOI	GRGCYC	1 cut(s)	225
GlaI	GCGC	3 cut(s)	185, 383, 588
HaeIII	GGCC	7 cut(s)	269, 510, 543, 602, 920, 929, 962
HapII	CCGG	6 cut(s)	417, 486, 507, 549, 596, 611
HgaI	GACGC	5 cut(s)	178, 269, 338, 541, 983
HhaI	GCGC	3 cut(s)	186, 384, 589
Hin1I	GRCGYC	5 cut(s)	189, 261, 282, 330, 552
Hin1II	CATG	5 cut(s)	122, 220, 268, 371, 559
Hin6I	GCGC	3 cut(s)	184, 382, 587
HinP1I	GCGC	3 cut(s)	184, 382, 587
HinfI	GANTC	5 cut(s)	71, 213, 489, 568, 733
HpaII	CCGG	6 cut(s)	417, 486, 507, 549, 596, 611
HphI	GGTGA	3 cut(s)	301, 454, 697
Hpy166II	GTNNAC	2 cut(s)	538, 751
Hpy188I	TCNGA	5 cut(s)	76, 178, 280, 397, 816
Hpy188III	TCNNGA	6 cut(s)	204, 556, 575, 619, 730, 971
Hpy8I	GTNNAC	2 cut(s)	538, 751
Hpy99I	CGWCG	6 cut(s)	159, 194, 263, 284, 332, 587
HpyAV	CCTTC	5 cut(s)	3, 316, 347, 835, 919
HpyCH4IV	ACGT	1 cut(s)	282
HpyCH4V	TGCA	2 cut(s)	4, 986
HpyF3I	CTNAG	6 cut(s)	110, 168, 394, 833, 891, 936
HpySE526I	ACGT	1 cut(s)	282
Hsp92I	GRCGYC	5 cut(s)	189, 261, 282, 330, 552
Hsp92II	CATG	5 cut(s)	122, 220, 268, 371, 559
HspAI	GCGC	3 cut(s)	184, 382, 587
KroI	GCCGGC	1 cut(s)	548
KroNI	GCCGGC	1 cut(s)	550
Kzo9I	GATC	2 cut(s)	577, 811
LmnI	GCTCC	4 cut(s)	119, 220, 234, 425
Lsp1109I	GCAGC	6 cut(s)	246, 307, 931, 934, 937, 940
LweI	GCATC	2 cut(s)	775, 973
MaeII	ACGT	1 cut(s)	282
MaeIII	GTNAC	3 cut(s)	64, 283, 685
MalI	GATC	2 cut(s)	579, 813
MbiI	CCGCTC	1 cut(s)	134
MboI	GATC	2 cut(s)	577, 811
MboII	GAAGA	3 cut(s)	307, 649, 835
MflI	RGATCY	1 cut(s)	577
MhlI	GDGCHC	2 cut(s)	225, 231
MlyI	GAGTC	3 cut(s)	222, 498, 742
MmeI	TCCRAC	3 cut(s)	152, 303, 894
MreI	CGCCGGCG	1 cut(s)	548
MroNI	GCCGGC	1 cut(s)	548
MroXI	GAANNNNTTC	1 cut(s)	803
MspA1I	CMGCKG	1 cut(s)	865
MspI	CCGG	6 cut(s)	417, 486, 507, 549, 596, 611
MspR9I	CCNGG	2 cut(s)	58, 507
MvaI	CCWGG	1 cut(s)	58
MvnI	CGCG	3 cut(s)	186, 587, 977
NaeI	GCCGGC	1 cut(s)	550
NciI	CCSGG	1 cut(s)	507
NcoI	CCATGG	2 cut(s)	118, 264
NdeII	GATC	2 cut(s)	577, 811
NgoMIV	GCCGGC	1 cut(s)	548
NlaIII	CATG	5 cut(s)	122, 220, 268, 371, 559
NlaIV	GGNNCC	4 cut(s)	222, 375, 421, 579
NmeAIII	GCCGAG	1 cut(s)	955
NmuCI	GTSAC	2 cut(s)	283, 685
PagI	TCATGA	1 cut(s)	555
PcsI	WCGNNNNNNNCGW	3 cut(s)	324, 360, 489
PdiI	GCCGGC	1 cut(s)	550
PdmI	GAANNNNTTC	1 cut(s)	803
PfeI	GAWTC	2 cut(s)	71, 568
PleI	GAGTC	3 cut(s)	221, 497, 741
PpsI	GAGTC	3 cut(s)	221, 497, 741
PshAI	GACNNNNGTC	1 cut(s)	51
Psp6I	CCWGG	1 cut(s)	56
PspGI	CCWGG	1 cut(s)	56
PspN4I	GGNNCC	4 cut(s)	222, 375, 421, 579
PspPI	GGNCC	1 cut(s)	125
PstNI	CAGNNNCTG	1 cut(s)	74
PsuI	RGATCY	1 cut(s)	577
PvuII	CAGCTG	1 cut(s)	865
RsaI	GTAC	1 cut(s)	752
RsaNI	GTAC	1 cut(s)	751
Sau3AI	GATC	2 cut(s)	577, 811
Sau96I	GGNCC	1 cut(s)	125
SchI	GAGTC	3 cut(s)	222, 498, 742
ScrFI	CCNGG	2 cut(s)	58, 507
SduI	GDGCHC	2 cut(s)	225, 231
SfaNI	GCATC	2 cut(s)	775, 973
SfiI	GGCCNNNNNGGCC	1 cut(s)	926
SgrAI	CRCCGGYG	1 cut(s)	548
SinI	GGWCC	1 cut(s)	125
SmlI	CTYRAG	1 cut(s)	730
SmoI	CTYRAG	1 cut(s)	730
StyD4I	CCNGG	2 cut(s)	56, 505
StyI	CCWWGG	2 cut(s)	118, 264
TaiI	ACGT	1 cut(s)	285
TaqI	TCGA	2 cut(s)	354, 492
TatI	WGTACW	1 cut(s)	750
TauI	GCSGC	6 cut(s)	189, 272, 275, 602, 944, 965
TfiI	GAWTC	2 cut(s)	71, 568
TseFI	GTSAC	2 cut(s)	283, 685
TseI	GCWGC	6 cut(s)	234, 320, 944, 947, 950, 953
Tsp45I	GTSAC	2 cut(s)	283, 685
VpaK11BI	GGWCC	1 cut(s)	125
XmnI	GAANNNNTTC	1 cut(s)	803
ZraI	GACGTC	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.