AT1G17370

Oligouridylate-binding protein 1B

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
5951542 .. 5955143
3602 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G17370.2

Sequence Viewer

Length: 1260 bp
ATGCAGAGGTTGAAGCAGCAGCAGCAGCAGCAACAAGTTATGATGCAGCAAGCTCTTATGCAGCAACAGTCTCTCTACCATCCTGGTCTCCTTGCCCCGCCACAGATAGAACCAATCCCAAGTGGAAATCTCCCCCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTACGTTGGAAACATCCATATTCAGGTGACGGAACCTCTGCTTCAAGAGGTTTTTGCTGGCACTGGTCCTGTAGAAAGCTGTAAACTAATTAGGAAAGAAAAGTCTTCTTATGGGTTTGTGCACTACTTTGATCGAAGATCGGCTGGTCTTGCAATCCTTTCTCTCAATGGAAGGCATTTGTTTGGGCAACCTATCAAGGTTAACTGGGCTTATGCGAGTGGCCAGAGGGAGGATACATCAAGTCACTTCAATATATTTGTTGGGGATTTGAGTCCGGAGGTTACTGATGCAATGCTGTTTACTTGCTTCTCTGTCTACCCGACTTGCTCGGATGCAAGAGTTATGTGGGATCAGAAAACTGGGCGTTCAAGAGGATTTGGATTTGTTTCCTTCCGTAACCAACAGGATGCCCAGACTGCAATAGATGAGATAACTGGGAAATGGCTTGGTTCCAGGCAGATACGTTGCAACTGGGCGACAAAGGGAGCCACTTCTGGTGAGGACAAACAGAGCTCTGATTCCAAAAGCGTCGTGGAACTTACCAGTGGTGTCTCGGAGGATGGTAAAGATACTACTAATGGTGAAGCTCCTGAGAACAATGCTCAGTACACAACTGTTTACGTCGGTAATCTTGCTCCAGAGGTGTCCCAGGTTGATCTTCACCGCCACTTCCATTCCCTTGGTGCTGGGGTCATAGAGGAAGTCCGTGTTCAAAGAGACAAAGGTTTCGGATTTGTGAGATACTCTACTCATGTAGAGGCAGCCCTCGCTATTCAGATGGGAAACACACATTCCTACCTTAGTGGCAGGCAAATGAAGTGTTCTTGGGGAAGCAAGCCAACTCCAGCAGGAACAGCTTCAAACCCGCTTCCTCCACCAGCTCCTGCACCAATCCCGGGATTCTCAGCGAGTGATCTCTTGGCTTACGAGAGGCAACTAGCGATGAGCAAGATGGCAGGAATGAATCCGATGATGCATCACCCGCAGGGACAACATGCTTTTAAACAAGCTGCAATGGGAGCCACTGGTTCAAACCAGGCAATATATGACGGTGGTTACCAGAACGCGCAGCAGCTCATGTACTACCAGTAA

Protein Analysis

419

Amino Acids

46.05

Weight (kDa)

7.21

Isoelectric Point (pI)

47.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 56 - 122 5.3e-12 RNA recognition motif
RRM_1 PF00076 141 - 211 1.8e-17 RNA recognition motif
RRM_1 PF00076 259 - 324 9.8e-11 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 483
AccII CGCG 1 cut(s) 1235
AccIII TCCGGA 1 cut(s) 442
AciI CCGC 5 cut(s) 98, 160, 832, 1034, 1151
AclWI GGATC 2 cut(s) 140, 525
AcoI YGGCCR 1 cut(s) 388
AfaI GTAC 4 cut(s) 154, 170, 776, 1250
AfiI CCNNNNNNNGG 3 cut(s) 190, 397, 1064
AgsI TTSAA 7 cut(s) 13, 212, 418, 537, 881, 1029, 1200
AjnI CCWGG 5 cut(s) 82, 136, 620, 816, 1203
AluBI AGCT 8 cut(s) 53, 246, 681, 755, 1025, 1049, 1178, 1243
AluI AGCT 8 cut(s) 53, 246, 681, 755, 1025, 1049, 1178, 1243
Alw21I GWGCWC 2 cut(s) 291, 683
Alw26I GTCTC 4 cut(s) 75, 92, 724, 879
Alw44I GTGCAC 1 cut(s) 287
AlwI GGATC 2 cut(s) 140, 525
AlwNI CAGNNNCTG 1 cut(s) 1052
Ama87I CYCGRG 1 cut(s) 1063
Aor13HI TCCGGA 1 cut(s) 442
AoxI GGCC 1 cut(s) 388
ApaLI GTGCAC 1 cut(s) 287
ArsI GACNNNNNNTTYG 2 cut(s) 878, 910
Asp700I GAANNNNTTC 1 cut(s) 1024
AspLEI GCGC 1 cut(s) 1237
AspS9I GGNCC 1 cut(s) 233
AsuC2I CCSGG 2 cut(s) 1064, 1065
AsuHPI GGTGA 5 cut(s) 205, 677, 761, 821, 1139
AvaI CYCGRG 1 cut(s) 1063
AvaII GGWCC 1 cut(s) 233
BaeGI GKGCMC 1 cut(s) 291
BalI TGGCCA 1 cut(s) 390
BanII GRGCYC 1 cut(s) 683
BbsI GAAGAC 1 cut(s) 264
Bbv12I GWGCWC 2 cut(s) 291, 683
BccI CCATC 4 cut(s) 87, 722, 940, 1114
BciT130I CCWGG 5 cut(s) 84, 138, 622, 818, 1205
BciVI GTATCC 1 cut(s) 394
BcnI CCSGG 2 cut(s) 1064, 1065
BcoDI GTCTC 4 cut(s) 75, 92, 724, 879
BfaI CTAG 1 cut(s) 1106
BfmI CTRYAG 1 cut(s) 237
BfuI GTATCC 1 cut(s) 394
BmcAI AGTACT 1 cut(s) 154
Bme1390I CCNGG 7 cut(s) 84, 138, 622, 818, 1064, 1065, 1205
Bme18I GGWCC 1 cut(s) 233
BmeT110I CYCGRG 1 cut(s) 1063
BmgT120I GGNCC 1 cut(s) 233
BmiI GGNNCC 4 cut(s) 201, 619, 655, 1189
BmrFI CCNGG 7 cut(s) 84, 138, 622, 818, 1064, 1065, 1205
BmrI ACTGGG 4 cut(s) 382, 537, 612, 649
BmsI GCATC 6 cut(s) 33, 445, 490, 565, 1131, 1153
BmuI ACTGGG 4 cut(s) 382, 537, 612, 649
BpiI GAAGAC 1 cut(s) 264
BpmI CTGGAG 2 cut(s) 789, 996
BpuMI CCSGG 2 cut(s) 1064, 1065
BsaI GGTCTC 1 cut(s) 92
BsaJI CCNNGG 4 cut(s) 136, 816, 847, 1063
BsaWI WCCGGW 1 cut(s) 442
Bsc4I CCNNNNNNNGG 3 cut(s) 190, 397, 1064
Bse1I ACTGG 8 cut(s) 235, 377, 532, 607, 644, 711, 1198, 1255
Bse3DI GCAATG 2 cut(s) 465, 1188
BseAI TCCGGA 1 cut(s) 442
BseBI CCWGG 5 cut(s) 84, 138, 622, 818, 1205
BseDI CCNNGG 4 cut(s) 136, 816, 847, 1063
BseGI GGATG 5 cut(s) 79, 180, 505, 580, 733
BseLI CCNNNNNNNGG 3 cut(s) 190, 397, 1064
BseMI GCAATG 2 cut(s) 465, 1188
BseMII CTCAG 3 cut(s) 750, 785, 1086
BseNI ACTGG 8 cut(s) 235, 377, 532, 607, 644, 711, 1198, 1255
BseSI GKGCMC 1 cut(s) 291
BseYI CCCAGC 1 cut(s) 854
BsgI GTGCAG 1 cut(s) 1038
Bsh1236I CGCG 1 cut(s) 1235
BshFI GGCC 1 cut(s) 390
BsiHKAI GWGCWC 2 cut(s) 291, 683
BsiHKCI CYCGRG 1 cut(s) 1063
BsiSI CCGG 2 cut(s) 443, 1064
BslFI GGGAC 2 cut(s) 799, 1170
BslI CCNNNNNNNGG 3 cut(s) 190, 397, 1064
BsmAI GTCTC 4 cut(s) 75, 92, 724, 879
BsmFI GGGAC 2 cut(s) 799, 1170
BsnI GGCC 1 cut(s) 390
Bso31I GGTCTC 1 cut(s) 92
BsoBI CYCGRG 1 cut(s) 1063
Bsp1286I GDGCHC 2 cut(s) 291, 683
Bsp13I TCCGGA 1 cut(s) 442
Bsp143I GATC 6 cut(s) 145, 298, 305, 517, 823, 1081
BspACI CCGC 5 cut(s) 98, 160, 832, 1034, 1151
BspANI GGCC 1 cut(s) 390
BspCNI CTCAG 3 cut(s) 751, 784, 1085
BspEI TCCGGA 1 cut(s) 442
BspFNI CGCG 1 cut(s) 1235
BspLI GGNNCC 4 cut(s) 201, 619, 655, 1189
BspPI GGATC 2 cut(s) 140, 525
BspTNI GGTCTC 1 cut(s) 92
BsrDI GCAATG 2 cut(s) 465, 1188
BsrI ACTGG 8 cut(s) 235, 377, 532, 607, 644, 711, 1198, 1255
BssECI CCNNGG 4 cut(s) 136, 816, 847, 1063
BssMI GATC 6 cut(s) 145, 298, 305, 517, 823, 1081
BssT1I CCWWGG 1 cut(s) 847
Bst2UI CCWGG 5 cut(s) 84, 138, 622, 818, 1205
Bst4CI ACNGT 3 cut(s) 69, 784, 1220
BstC8I GCNNGC 4 cut(s) 51, 226, 977, 1004
BstDEI CTNAG 4 cut(s) 759, 771, 968, 1072
BstEII GGTNACC 1 cut(s) 1223
BstF5I GGATG 5 cut(s) 79, 180, 505, 580, 733
BstFNI CGCG 1 cut(s) 1235
BstHHI GCGC 1 cut(s) 1237
BstKTI GATC 6 cut(s) 148, 301, 308, 520, 826, 1084
BstMAI GTCTC 4 cut(s) 75, 92, 724, 879
BstMBI GATC 6 cut(s) 145, 298, 305, 517, 823, 1081
BstMWI GCNNNNNNNGC 9 cut(s) 22, 25, 28, 317, 584, 935, 1022, 1150, 1187
BstNI CCWGG 5 cut(s) 84, 138, 622, 818, 1205
BstNSI RCATGY 1 cut(s) 1166
BstPI GGTNACC 1 cut(s) 1223
BstSCI CCNGG 7 cut(s) 82, 136, 620, 816, 1062, 1063, 1203
BstSFI CTRYAG 1 cut(s) 237
BstSLI GKGCMC 1 cut(s) 291
BstUI CGCG 1 cut(s) 1235
BstV2I GAAGAC 1 cut(s) 264
BstXI CCANNNNNNTGG 1 cut(s) 848
BsuI GTATCC 1 cut(s) 394
BsuRI GGCC 1 cut(s) 390
BtgZI GCGATG 1 cut(s) 1124
BtsCI GGATG 5 cut(s) 79, 180, 505, 580, 733
BtsI GCAGTG 1 cut(s) 169
BtsIMutI CAGTG 4 cut(s) 169, 228, 718, 1191
Cac8I GCNNGC 4 cut(s) 51, 226, 977, 1004
CaiI CAGNNNCTG 1 cut(s) 1052
CfoI GCGC 1 cut(s) 1237
Cfr13I GGNCC 1 cut(s) 233
Cfr9I CCCGGG 1 cut(s) 1063
CseI GACGC 1 cut(s) 685
Csp6I GTAC 4 cut(s) 153, 169, 775, 1249
CviAII CATG 3 cut(s) 920, 1163, 1246
CviQI GTAC 4 cut(s) 153, 169, 775, 1249
DdeI CTNAG 4 cut(s) 759, 771, 968, 1072
DpnI GATC 6 cut(s) 147, 300, 307, 519, 825, 1083
DpnII GATC 6 cut(s) 145, 298, 305, 517, 823, 1081
DraI TTTAAA 1 cut(s) 1171
EaeI YGGCCR 1 cut(s) 388
Ecl136II GAGCTC 1 cut(s) 681
Eco130I CCWWGG 1 cut(s) 847
Eco24I GRGCYC 1 cut(s) 683
Eco31I GGTCTC 1 cut(s) 92
Eco47I GGWCC 1 cut(s) 233
Eco53kI GAGCTC 1 cut(s) 681
Eco88I CYCGRG 1 cut(s) 1063
Eco91I GGTNACC 1 cut(s) 1223
EcoICRI GAGCTC 1 cut(s) 681
EcoO65I GGTNACC 1 cut(s) 1223
EcoRII CCWGG 5 cut(s) 82, 136, 620, 816, 1203
EcoT14I CCWWGG 1 cut(s) 847
EcoT22I ATGCAT 1 cut(s) 1146
EcoT38I GRGCYC 1 cut(s) 683
ErhI CCWWGG 1 cut(s) 847
FaeI CATG 3 cut(s) 923, 1166, 1249
FaqI GGGAC 2 cut(s) 799, 1170
FatI CATG 3 cut(s) 919, 1162, 1245
FauI CCCGC 3 cut(s) 105, 1041, 1158
FblI GTMKAC 1 cut(s) 483
FokI GGATG 5 cut(s) 66, 167, 512, 587, 740
FriOI GRGCYC 1 cut(s) 683
FspBI CTAG 1 cut(s) 1106
GlaI GCGC 1 cut(s) 1236
GsaI CCCAGC 1 cut(s) 858
GsuI CTGGAG 2 cut(s) 789, 996
HaeIII GGCC 1 cut(s) 390
HapII CCGG 2 cut(s) 443, 1064
HgaI GACGC 1 cut(s) 685
HhaI GCGC 1 cut(s) 1237
Hin1II CATG 3 cut(s) 923, 1166, 1249
Hin6I GCGC 1 cut(s) 1235
HinP1I GCGC 1 cut(s) 1235
HincII GTYRAC 1 cut(s) 370
HindII GTYRAC 1 cut(s) 370
HinfI GANTC 4 cut(s) 439, 686, 1068, 1132
HpaI GTTAAC 1 cut(s) 370
HpaII CCGG 2 cut(s) 443, 1064
HphI GGTGA 5 cut(s) 205, 677, 761, 821, 1139
Hpy166II GTNNAC 8 cut(s) 169, 251, 289, 370, 468, 484, 777, 787
Hpy188I TCNGA 7 cut(s) 499, 522, 685, 724, 899, 945, 1137
Hpy188III TCNNGA 5 cut(s) 212, 443, 537, 758, 806
Hpy8I GTNNAC 8 cut(s) 169, 251, 289, 370, 468, 484, 777, 787
Hpy99I CGWCG 2 cut(s) 701, 794
HpyAV CCTTC 2 cut(s) 333, 568
HpyCH4III ACNGT 3 cut(s) 69, 784, 1220
HpyCH4IV ACGT 3 cut(s) 171, 631, 789
HpyF10VI GCNNNNNNNGC 9 cut(s) 22, 25, 28, 317, 584, 935, 1022, 1150, 1187
HpyF3I CTNAG 4 cut(s) 759, 771, 968, 1072
HpySE526I ACGT 3 cut(s) 171, 631, 789
Hsp92II CATG 3 cut(s) 923, 1166, 1249
HspAI GCGC 1 cut(s) 1235
Kpn2I TCCGGA 1 cut(s) 442
KspAI GTTAAC 1 cut(s) 370
Kzo9I GATC 6 cut(s) 145, 298, 305, 517, 823, 1081
LmnI GCTCC 5 cut(s) 653, 760, 808, 1054, 1187
LweI GCATC 6 cut(s) 33, 445, 490, 565, 1131, 1153
MaeI CTAG 1 cut(s) 1106
MaeII ACGT 3 cut(s) 171, 631, 789
MaeIII GTNAC 5 cut(s) 193, 410, 448, 563, 1223
MalI GATC 6 cut(s) 147, 300, 307, 519, 825, 1083
MboI GATC 6 cut(s) 145, 298, 305, 517, 823, 1081
MboII GAAGA 3 cut(s) 264, 315, 818
MhlI GDGCHC 2 cut(s) 291, 683
MlsI TGGCCA 1 cut(s) 390
MluCI AATT 1 cut(s) 255
MluNI TGGCCA 1 cut(s) 390
MlyI GAGTC 1 cut(s) 448
MmeI TCCRAC 1 cut(s) 154
Mox20I TGGCCA 1 cut(s) 390
Mph1103I ATGCAT 1 cut(s) 1146
MroI TCCGGA 1 cut(s) 442
MroXI GAANNNNTTC 1 cut(s) 1024
MscI TGGCCA 1 cut(s) 390
MseI TTAA 2 cut(s) 369, 1170
Msp20I TGGCCA 1 cut(s) 390
MspI CCGG 2 cut(s) 443, 1064
MspR9I CCNGG 7 cut(s) 84, 138, 622, 818, 1064, 1065, 1205
MvaI CCWGG 5 cut(s) 84, 138, 622, 818, 1205
MvnI CGCG 1 cut(s) 1235
MwoI GCNNNNNNNGC 9 cut(s) 22, 25, 28, 317, 584, 935, 1022, 1150, 1187
NciI CCSGG 2 cut(s) 1064, 1065
NdeII GATC 6 cut(s) 145, 298, 305, 517, 823, 1081
NlaIII CATG 3 cut(s) 923, 1166, 1249
NlaIV GGNNCC 4 cut(s) 201, 619, 655, 1189
NmuCI GTSAC 2 cut(s) 193, 410
NsiI ATGCAT 1 cut(s) 1146
NspI RCATGY 1 cut(s) 1166
PdmI GAANNNNTTC 1 cut(s) 1024
PfeI GAWTC 3 cut(s) 686, 1068, 1132
PleI GAGTC 1 cut(s) 447
PpsI GAGTC 1 cut(s) 447
Psp124BI GAGCTC 1 cut(s) 683
Psp6I CCWGG 5 cut(s) 82, 136, 620, 816, 1203
PspEI GGTNACC 1 cut(s) 1223
PspFI CCCAGC 1 cut(s) 854
PspGI CCWGG 5 cut(s) 82, 136, 620, 816, 1203
PspN4I GGNNCC 4 cut(s) 201, 619, 655, 1189
PspPI GGNCC 1 cut(s) 233
PstNI CAGNNNCTG 1 cut(s) 1052
RsaI GTAC 4 cut(s) 154, 170, 776, 1250
RsaNI GTAC 4 cut(s) 153, 169, 775, 1249
SacI GAGCTC 1 cut(s) 683
SaqAI TTAA 2 cut(s) 369, 1170
Sau3AI GATC 6 cut(s) 145, 298, 305, 517, 823, 1081
Sau96I GGNCC 1 cut(s) 233
ScaI AGTACT 1 cut(s) 154
SchI GAGTC 1 cut(s) 448
ScrFI CCNGG 7 cut(s) 84, 138, 622, 818, 1064, 1065, 1205
SduI GDGCHC 2 cut(s) 291, 683
SfaNI GCATC 6 cut(s) 33, 445, 490, 565, 1131, 1153
SfcI CTRYAG 1 cut(s) 237
SinI GGWCC 1 cut(s) 233
SmaI CCCGGG 1 cut(s) 1065
Sse9I AATT 1 cut(s) 255
SsiI CCGC 5 cut(s) 98, 160, 832, 1034, 1151
SspMI CTAG 1 cut(s) 1106
SstI GAGCTC 1 cut(s) 683
StyD4I CCNGG 7 cut(s) 82, 136, 620, 816, 1062, 1063, 1203
StyI CCWWGG 1 cut(s) 847
TaaI ACNGT 3 cut(s) 69, 784, 1220
TaiI ACGT 3 cut(s) 174, 634, 792
TaqI TCGA 1 cut(s) 301
TasI AATT 1 cut(s) 255
TatI WGTACW 3 cut(s) 152, 774, 1248
TauI GCSGC 1 cut(s) 162
TfiI GAWTC 3 cut(s) 686, 1068, 1132
Tru1I TTAA 2 cut(s) 369, 1170
Tru9I TTAA 2 cut(s) 369, 1170
TscAI CASTG 4 cut(s) 169, 235, 718, 1198
TseFI GTSAC 2 cut(s) 193, 410
Tsp45I GTSAC 2 cut(s) 193, 410
TspDTI ATGAA 2 cut(s) 998, 1145
TspGWI ACGGA 3 cut(s) 212, 551, 863
TspMI CCCGGG 1 cut(s) 1063
TspRI CASTG 4 cut(s) 169, 235, 718, 1198
VneI GTGCAC 1 cut(s) 287
VpaK11BI GGWCC 1 cut(s) 233
XceI RCATGY 1 cut(s) 1166
XcmI CCANNNNNNNNNTGG 1 cut(s) 697
XmaI CCCGGG 1 cut(s) 1063
XmiI GTMKAC 1 cut(s) 483
XmnI GAANNNNTTC 1 cut(s) 1024
XspI CTAG 1 cut(s) 1106
ZrmI AGTACT 1 cut(s) 154
Zsp2I ATGCAT 1 cut(s) 1146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.