Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004118

Physical Location & Seq

Genomic Coordinates Forward (+)

4672916 .. 4676162

Gene Structure 3247 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G14100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGCAGAATCCGAGACTGAAGCAACATCAGCAGCAACAACAACAACAAGCTATGATGCAGCAACAAGCTCTGATGCAGCAACACTCTCTTTACCATCCTGGTGTTTTGGCTCCTCCTCAGTTAGAGCCTGTTCCAAGTGGAAACCTTCCTCCTGGTTTTGATCCCAGTACTTGCCGTAGCGTGTATGTTGGAAACATCCATACACAGGTCACAGAGCCTTTGCTTCAAGAGATTTTTACAAGCACTGGCCCTGTTGAAAGCAGTAAACTCATCAGAAAGGATAAGTCATCATATGGATTTGTTCACTACTTTGATCGAAGATCCGCTGCTCTGGCTATACTGTCTCTGAACGGAAGGCATCTGTTTGGACAGCCTATCAAAGTCAATTGGGCGTATGCCACTGGTCAGAGGGAAGATACATCAAGTCATTTCAACATTTTTGTTGGAGATCTCAGTCCAGAGGTCACTGATGCAACATTATATCAAAGCTTTTCTGTCTTTTCCAGTTGTTCGGATGCGAGAGTTATGTGGGACCAAAAAACTGGGCGCTCGAGAGGCTTTGGGTTTGTTTCCTTCCGCAATCAACAGGATGCTCAAACTGCCATTAATGAGATGAATGGTAAGTGGTTAAGTAGCAGACAAATCAGATGCAACTGGGCCACGAAGGGCGCTACTTCTGGTGATGATAAGCTCAGTTCTGATGGAAAAAGTGTTGTGGAACTTACAACTGGCTCATCAGAGGATGGTAAAGAGACATTAAATGAGGAAACACCTGAAAATAATTCTCAGTTTACCACTGTTTATGTGGGAAACCTTGCTCCAGAGGTAACTCAGCTTGATCTACACCGTTACTTCCATGCTCTTGGCGCTGGAGTTATTGAGGAGGTCCGTGTCCAACGAGACAAAGGCTTTGGTTTCGTGAGATATAACACTCATCCCGAAGCTGCTCTTGCTATTCAGATGGGTAACACTCAGCCTTACCTCTTTAACAGACAGATAAAGTGCTCATGGGGAAACAAGCCAACTCCACCAGGTACAGCCTCAAACCCACTTCCCCCACCTGCCCCAGCTCCAGTTCCTGGTCTATCTGCAGCTGATCTCCTAAACTATGAGAGGCAATTGGCACTTAGCAAGATGGCAAGTGTGAATGCGTTAATGCATCAACAGGGTCAACACCCTCTAAGGCAGGCTCATGGAATAAATGCCGCTGGAGCAACTGCAGCCATGTATGATGGTGGCTTTCAGAATGTAGCCGCCGCACAGCAACTCATGTACTATCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005764 GO:0005773 GO:0006355 GO:0006357 GO:0006915 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0008150 GO:0008219 GO:0008543 GO:0009719 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010494 GO:0010556 GO:0012501 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0035770 GO:0036464 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044344 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070848 GO:0070887 GO:0071310 GO:0071363 GO:0071495 GO:0071774 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:1990904 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

427

Amino Acids

47.09

Weight (kDa)

7.22

Isoelectric Point (pI)

46.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	61 - 127	1.1e-12	RNA recognition motif
RRM_1	PF00076	146 - 216	1.1e-19	RNA recognition motif
RRM_1	PF00076	267 - 324	4e-11	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004118)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17370 AT1G17370 AT1G54080 AT3G14100
fragaria_vesca	FvH4_1g09080 FvH4_6g35150
malus_domestica	MD02G1096200.v1.1 MD09G1178500.v1.1 MD17G1148300.v1.1
prunus_persica	Prupe.3G037700_v2.0.a1 Prupe.3G037700_v2.0.a1 Prupe.7G194700_v2.0.a1 Prupe.7G194700_v2.0.a1
pyrus_communis	pycom02g07600 pycom15g19550 pycom17g14160
rosa_chinensis	RchiOBHm_Chr2g0095491 RchiOBHm_Chr2g0146411
rosa_laevigata	RLG00000016572 RLG00000020198
rosa_multiflora	Rmu_sc0006076.1_g000007
rosa_roxburghii	Rroxscaffold_2G00100120 Rroxscaffold_2G00146260
rosa_rugosa	Rorug02G0051600 Rorug02G0394100 Rorug02G0394200
rosa_samantha	Rh2AG450900 Rh2BG100900 Rh2BG463300 Rh2CG437700 Rh2DG472300
rosa_wichuraiana	Rw2G007550 Rw2G036800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1069
Acc36I	ACCTGC	1 cut(s)	1069
AccB7I	CCANNNNNTGG	1 cut(s)	1079
AciI	CCGC	5 cut(s)	324, 577, 1206, 1254, 1257
AclWI	GGATC	2 cut(s)	155, 315
AcuI	CTGAAG	1 cut(s)	38
AfaI	GTAC	3 cut(s)	169, 1036, 1274
AfiI	CCNNNNNNNGG	2 cut(s)	205, 1079
AgsI	TTSAA	3 cut(s)	227, 257, 433
AjnI	CCWGG	4 cut(s)	97, 151, 1030, 1078
AluBI	AGCT	8 cut(s)	50, 68, 489, 691, 835, 944, 1070, 1094
AluI	AGCT	8 cut(s)	50, 68, 489, 691, 835, 944, 1070, 1094
Alw21I	GWGCWC	1 cut(s)	1007
Alw26I	GTCTC	4 cut(s)	7, 348, 746, 894
AlwI	GGATC	2 cut(s)	155, 315
AlwNI	CAGNNNCTG	1 cut(s)	1079
Ama87I	CYCGRG	1 cut(s)	550
AoxI	GGCC	2 cut(s)	247, 657
ApeKI	GCWGC	7 cut(s)	31, 58, 76, 326, 944, 1091, 1220
ArsI	GACNNNNNNTTYG	2 cut(s)	893, 925
AseI	ATTAAT	1 cut(s)	606
AspLEI	GCGC	3 cut(s)	549, 671, 869
AspS9I	GGNCC	4 cut(s)	248, 532, 657, 886
AsuHPI	GGTGA	1 cut(s)	692
AvaI	CYCGRG	1 cut(s)	550
AvaII	GGWCC	2 cut(s)	532, 886
Bbv12I	GWGCWC	1 cut(s)	1007
BbvI	GCAGC	7 cut(s)	43, 70, 88, 313, 931, 1103, 1232
BccI	CCATC	6 cut(s)	102, 695, 737, 955, 1129, 1226
BceAI	ACGGC	1 cut(s)	159
BciT130I	CCWGG	4 cut(s)	99, 153, 1032, 1080
BcoDI	GTCTC	4 cut(s)	7, 348, 746, 894
BfmI	CTRYAG	2 cut(s)	1089, 1218
BfoI	RGCGCY	3 cut(s)	550, 672, 870
BfuAI	ACCTGC	1 cut(s)	1069
BglII	AGATCT	1 cut(s)	448
BmcAI	AGTACT	1 cut(s)	169
Bme1390I	CCNGG	4 cut(s)	99, 153, 1032, 1080
Bme18I	GGWCC	2 cut(s)	532, 886
BmeT110I	CYCGRG	1 cut(s)	550
BmgT120I	GGNCC	4 cut(s)	248, 532, 657, 886
BmiI	GGNNCC	2 cut(s)	111, 533
BmrFI	CCNGG	4 cut(s)	99, 153, 1032, 1080
BmrI	ACTGGG	3 cut(s)	159, 552, 664
BmsI	GCATC	8 cut(s)	45, 63, 367, 460, 505, 580, 638, 1168
BmuI	ACTGGG	3 cut(s)	159, 552, 664
BpmI	CTGGAG	4 cut(s)	804, 891, 1056, 1230
Bsc4I	CCNNNNNNNGG	2 cut(s)	205, 1079
Bse1I	ACTGG	8 cut(s)	165, 250, 406, 504, 547, 659, 733, 1073
BseBI	CCWGG	4 cut(s)	99, 153, 1032, 1080
BseGI	GGATG	6 cut(s)	94, 195, 520, 595, 748, 934
BseLI	CCNNNNNNNGG	2 cut(s)	205, 1079
BseMII	CTCAG	6 cut(s)	131, 466, 706, 800, 845, 986
BseNI	ACTGG	8 cut(s)	165, 250, 406, 504, 547, 659, 733, 1073
BseRI	GAGGAG	3 cut(s)	102, 105, 896
BseXI	GCAGC	7 cut(s)	43, 70, 88, 313, 931, 1103, 1232
BseYI	CCCAGC	1 cut(s)	1066
BshFI	GGCC	2 cut(s)	249, 659
BsiHKAI	GWGCWC	1 cut(s)	1007
BsiHKCI	CYCGRG	1 cut(s)	550
BslFI	GGGAC	1 cut(s)	545
BslI	CCNNNNNNNGG	2 cut(s)	205, 1079
BsmAI	GTCTC	4 cut(s)	7, 348, 746, 894
BsmFI	GGGAC	1 cut(s)	545
BsmI	GAATGC	1 cut(s)	1153
BsnI	GGCC	2 cut(s)	249, 659
BsoBI	CYCGRG	1 cut(s)	550
Bsp1286I	GDGCHC	1 cut(s)	1007
Bsp143I	GATC	6 cut(s)	160, 313, 320, 448, 838, 1096
BspACI	CCGC	5 cut(s)	324, 577, 1206, 1254, 1257
BspANI	GGCC	2 cut(s)	249, 659
BspCNI	CTCAG	6 cut(s)	130, 465, 705, 799, 844, 985
BspLI	GGNNCC	2 cut(s)	111, 533
BspMAI	CTGCAG	2 cut(s)	1093, 1222
BspMI	ACCTGC	1 cut(s)	1069
BspPI	GGATC	2 cut(s)	155, 315
BsrI	ACTGG	8 cut(s)	165, 250, 406, 504, 547, 659, 733, 1073
BssMI	GATC	6 cut(s)	160, 313, 320, 448, 838, 1096
Bst2UI	CCWGG	4 cut(s)	99, 153, 1032, 1080
Bst4CI	ACNGT	3 cut(s)	342, 799, 848
BstC8I	GCNNGC	1 cut(s)	1188
BstDEI	CTNAG	8 cut(s)	117, 452, 692, 786, 831, 972, 1127, 1181
BstF5I	GGATG	6 cut(s)	94, 195, 520, 595, 748, 934
BstH2I	RGCGCY	3 cut(s)	550, 672, 870
BstHHI	GCGC	3 cut(s)	549, 671, 869
BstKTI	GATC	6 cut(s)	163, 316, 323, 451, 841, 1099
BstMAI	GTCTC	4 cut(s)	7, 348, 746, 894
BstMBI	GATC	6 cut(s)	160, 313, 320, 448, 838, 1096
BstMWI	GCNNNNNNNGC	8 cut(s)	28, 332, 555, 599, 866, 950, 1211, 1220
BstNI	CCWGG	4 cut(s)	99, 153, 1032, 1080
BstSCI	CCNGG	4 cut(s)	97, 151, 1030, 1078
BstSFI	CTRYAG	2 cut(s)	1089, 1218
BstV1I	GCAGC	7 cut(s)	43, 70, 88, 313, 931, 1103, 1232
BstX2I	RGATCY	2 cut(s)	320, 448
BstXI	CCANNNNNNTGG	2 cut(s)	542, 863
BstYI	RGATCY	2 cut(s)	320, 448
BsuRI	GGCC	2 cut(s)	249, 659
BtsCI	GGATG	6 cut(s)	94, 195, 520, 595, 748, 934
BtsIMutI	CAGTG	4 cut(s)	243, 399, 465, 795
BveI	ACCTGC	1 cut(s)	1069
Cac8I	GCNNGC	1 cut(s)	1188
CaiI	CAGNNNCTG	1 cut(s)	1079
CfoI	GCGC	3 cut(s)	549, 671, 869
Cfr13I	GGNCC	4 cut(s)	248, 532, 657, 886
CsiI	ACCWGGT	1 cut(s)	1030
Csp6I	GTAC	3 cut(s)	168, 1035, 1273
CviAII	CATG	5 cut(s)	857, 1008, 1193, 1225, 1270
CviQI	GTAC	3 cut(s)	168, 1035, 1273
DdeI	CTNAG	8 cut(s)	117, 452, 692, 786, 831, 972, 1127, 1181
DpnI	GATC	6 cut(s)	162, 315, 322, 450, 840, 1098
DpnII	GATC	6 cut(s)	160, 313, 320, 448, 838, 1096
Eco47I	GGWCC	2 cut(s)	532, 886
Eco57I	CTGAAG	1 cut(s)	38
Eco88I	CYCGRG	1 cut(s)	550
EcoRII	CCWGG	4 cut(s)	97, 151, 1030, 1078
EcoT22I	ATGCAT	1 cut(s)	1161
FaeI	CATG	5 cut(s)	860, 1011, 1196, 1228, 1273
FalI	AAGNNNNNCTT	2 cut(s)	933, 965
FaqI	GGGAC	1 cut(s)	545
FatI	CATG	5 cut(s)	856, 1007, 1192, 1224, 1269
FauNDI	CATATG	1 cut(s)	292
FokI	GGATG	6 cut(s)	81, 182, 527, 602, 755, 921
GlaI	GCGC	3 cut(s)	548, 670, 868
GsaI	CCCAGC	1 cut(s)	1070
GsuI	CTGGAG	4 cut(s)	804, 891, 1056, 1230
HaeII	RGCGCY	3 cut(s)	550, 672, 870
HaeIII	GGCC	2 cut(s)	249, 659
HhaI	GCGC	3 cut(s)	549, 671, 869
Hin1II	CATG	5 cut(s)	860, 1011, 1196, 1228, 1273
Hin6I	GCGC	3 cut(s)	547, 669, 867
HinP1I	GCGC	3 cut(s)	547, 669, 867
HincII	GTYRAC	1 cut(s)	1172
HindII	GTYRAC	1 cut(s)	1172
HindIII	AAGCTT	1 cut(s)	487
HinfI	GANTC	1 cut(s)	7
HphI	GGTGA	1 cut(s)	692
Hpy166II	GTNNAC	4 cut(s)	266, 304, 792, 1172
Hpy188III	TCNNGA	6 cut(s)	227, 458, 552, 821, 919, 938
Hpy8I	GTNNAC	4 cut(s)	266, 304, 792, 1172
HpyAV	CCTTC	4 cut(s)	155, 348, 583, 658
HpyCH4III	ACNGT	3 cut(s)	342, 799, 848
HpyCH4V	TGCA	8 cut(s)	4, 58, 76, 473, 651, 1091, 1159, 1220
HpyF10VI	GCNNNNNNNGC	8 cut(s)	28, 332, 555, 599, 866, 950, 1211, 1220
HpyF3I	CTNAG	8 cut(s)	117, 452, 692, 786, 831, 972, 1127, 1181
Hsp92II	CATG	5 cut(s)	860, 1011, 1196, 1228, 1273
HspAI	GCGC	3 cut(s)	547, 669, 867
Kzo9I	GATC	6 cut(s)	160, 313, 320, 448, 838, 1096
LmnI	GCTCC	4 cut(s)	115, 823, 1075, 1211
Lsp1109I	GCAGC	7 cut(s)	43, 70, 88, 313, 931, 1103, 1232
LweI	GCATC	8 cut(s)	45, 63, 367, 460, 505, 580, 638, 1168
MabI	ACCWGGT	1 cut(s)	1030
MaeIII	GTNAC	5 cut(s)	208, 463, 826, 848, 965
MalI	GATC	6 cut(s)	162, 315, 322, 450, 840, 1098
MboI	GATC	6 cut(s)	160, 313, 320, 448, 838, 1096
MboII	GAAGA	2 cut(s)	330, 425
MfeI	CAATTG	2 cut(s)	385, 1118
MflI	RGATCY	2 cut(s)	320, 448
MhlI	GDGCHC	1 cut(s)	1007
MluCI	AATT	3 cut(s)	385, 781, 1118
MmeI	TCCRAC	3 cut(s)	169, 424, 919
Mph1103I	ATGCAT	1 cut(s)	1161
MseI	TTAA	5 cut(s)	606, 629, 758, 987, 1154
MslI	CAYNNNNRTG	1 cut(s)	99
MspA1I	CMGCKG	3 cut(s)	326, 1094, 1208
MspR9I	CCNGG	4 cut(s)	99, 153, 1032, 1080
MunI	CAATTG	2 cut(s)	385, 1118
Mva1269I	GAATGC	1 cut(s)	1153
MvaI	CCWGG	4 cut(s)	99, 153, 1032, 1080
MwoI	GCNNNNNNNGC	8 cut(s)	28, 332, 555, 599, 866, 950, 1211, 1220
NdeI	CATATG	1 cut(s)	292
NdeII	GATC	6 cut(s)	160, 313, 320, 448, 838, 1096
NlaIII	CATG	5 cut(s)	860, 1011, 1196, 1228, 1273
NlaIV	GGNNCC	2 cut(s)	111, 533
NmuCI	GTSAC	2 cut(s)	208, 463
NsiI	ATGCAT	1 cut(s)	1161
PaeR7I	CTCGAG	1 cut(s)	550
PaqCI	CACCTGC	1 cut(s)	1069
PctI	GAATGC	1 cut(s)	1153
PfeI	GAWTC	1 cut(s)	7
PflMI	CCANNNNNTGG	1 cut(s)	1079
PshBI	ATTAAT	1 cut(s)	606
Psp6I	CCWGG	4 cut(s)	97, 151, 1030, 1078
PspFI	CCCAGC	1 cut(s)	1066
PspGI	CCWGG	4 cut(s)	97, 151, 1030, 1078
PspN4I	GGNNCC	2 cut(s)	111, 533
PspPI	GGNCC	4 cut(s)	248, 532, 657, 886
PstI	CTGCAG	2 cut(s)	1093, 1222
PstNI	CAGNNNCTG	1 cut(s)	1079
PsuI	RGATCY	2 cut(s)	320, 448
PvuII	CAGCTG	1 cut(s)	1094
RsaI	GTAC	3 cut(s)	169, 1036, 1274
RsaNI	GTAC	3 cut(s)	168, 1035, 1273
RseI	CAYNNNNRTG	1 cut(s)	99
SaqAI	TTAA	5 cut(s)	606, 629, 758, 987, 1154
Sau3AI	GATC	6 cut(s)	160, 313, 320, 448, 838, 1096
Sau96I	GGNCC	4 cut(s)	248, 532, 657, 886
ScaI	AGTACT	1 cut(s)	169
ScrFI	CCNGG	4 cut(s)	99, 153, 1032, 1080
SduI	GDGCHC	1 cut(s)	1007
SexAI	ACCWGGT	1 cut(s)	1030
SfaNI	GCATC	8 cut(s)	45, 63, 367, 460, 505, 580, 638, 1168
SfcI	CTRYAG	2 cut(s)	1089, 1218
Sfr274I	CTCGAG	1 cut(s)	550
SinI	GGWCC	2 cut(s)	532, 886
SlaI	CTCGAG	1 cut(s)	550
SmiMI	CAYNNNNRTG	1 cut(s)	99
SmlI	CTYRAG	1 cut(s)	550
SmoI	CTYRAG	1 cut(s)	550
Sse9I	AATT	3 cut(s)	385, 781, 1118
SsiI	CCGC	5 cut(s)	324, 577, 1206, 1254, 1257
StyD4I	CCNGG	4 cut(s)	97, 151, 1030, 1078
TaaI	ACNGT	3 cut(s)	342, 799, 848
TaqI	TCGA	2 cut(s)	316, 551
TasI	AATT	3 cut(s)	385, 781, 1118
TatI	WGTACW	2 cut(s)	167, 1272
TauI	GCSGC	3 cut(s)	1208, 1256, 1259
TfiI	GAWTC	1 cut(s)	7
Tru1I	TTAA	5 cut(s)	606, 629, 758, 987, 1154
Tru9I	TTAA	5 cut(s)	606, 629, 758, 987, 1154
TscAI	CASTG	4 cut(s)	250, 406, 472, 802
TseFI	GTSAC	2 cut(s)	208, 463
TseI	GCWGC	7 cut(s)	31, 58, 76, 326, 944, 1091, 1220
Tsp45I	GTSAC	2 cut(s)	208, 463
TspDTI	ATGAA	1 cut(s)	629
TspGWI	ACGGA	2 cut(s)	366, 878
TspRI	CASTG	4 cut(s)	250, 406, 472, 802
Van91I	CCANNNNNTGG	1 cut(s)	1079
VpaK11BI	GGWCC	2 cut(s)	532, 886
VspI	ATTAAT	1 cut(s)	606
XcmI	CCANNNNNNNNNTGG	1 cut(s)	802
XhoI	CTCGAG	1 cut(s)	550
ZrmI	AGTACT	1 cut(s)	169
Zsp2I	ATGCAT	1 cut(s)	1161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.