Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0004118

Physical Location & Seq

Genomic Coordinates Reverse (-)

18477522 .. 18481884

Gene Structure 4363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G194700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGCAACAGCAGAGGCTCAAACAACAGCAAGCCATGATGCAGCAGTCGCTGTACCAACACCCTGCCATCTTAGCCGCTCCTCAGATAGAGCCTATCTTGAGTGGAAATCTGCCTCCTGGGTTTGATTCAAGTACATGCCGCAGTGTGTATGTTGGAAATATTCACCCACAGGTTACTGAACCCCTTCTTCAAGAAGTTTTCTCTAGTACTGGTCCGCTTGAAGGATGCAAGCTCATAAGAAAAGATAAGTCATCCTATGGATTTGTTGACTACTTTGATCGTAGGTCAGCTGCTTATGCTATTGTGACTCTCAATGGCAGGCATCTGTTTGGGCAGCCGATCAAAGTTAATTGGGCATATGCAAGTAGTCAGAGGGAGGATACATCAGGTCACTTTAATATTTTCGTTGGTGATCTTAGCCCTGAGGTTACCGATGCTACACTCTTTGCATGCTTTTCTGTTTATTCAAGTTGTTCAGATGCTAGGGTTATGTGGGATCAGAAAACTGGGCGTTCAAGGGGTTTTGGGTTTGTTTCTTTCAGAAGTCAGCAGGATGCCCAAAGTGCGATAAATGACTTAAATGGAAAATGGCTTGGAAGTAGACAAATTCGGTGTAATTGGGCCACAAAAGGTGCCACTTCCAATGATGACAAGCAGAGTTCTGATTCTAAAAGTGTTGTAGAGCTGACAAATGGAACATCAGAAGACGGTCAGGAGAAGCCTAATGAAGATGCTCCAGAGAACAATCCTCAGTATACTACAGTTTATGTGGGCAATCTGGCTCCAGAGGTTACTTCAGTTGACCTCCATCGTCATTTCCATTCCCTTGGTGCTGGAACTATTGAAGATGTCCGTGTGCAACGAGATAAAGGTTTTGGGTTTGTGAGATTCAGTACACATTCTGAAGCCGCTGTAGCTATCCAGTTGGGGAATGCTAGGTTTCTCTGTGGAAAACCAATTAAGTGTTCATGGGGTAGCAAGCCTACTCCACCAGGAACAAGCTCTACCCCCCTTCCGCCGCCAGCTGCAGCTCAAATGCCAGGTTTCTCGGCCGCTGATCTTGCTGCCTATGAAAGACAAATGGCACTGAGCAAAATGGGTGGTGCACAAGCCCTCATGCTGCCGCAGGGTCAGCATGCTCTGAAGGCAGCCATGGGAATGGGTGCCGGAGCTAGTCAGGCGATATACGACGGCGGCTTCCAGAATGTAGCAACAACCCAGCAACTCATGTACTACCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005764 GO:0005773 GO:0006355 GO:0006357 GO:0006915 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0008150 GO:0008219 GO:0008543 GO:0009719 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010494 GO:0010556 GO:0012501 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0035770 GO:0036464 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044344 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070848 GO:0070887 GO:0071310 GO:0071363 GO:0071495 GO:0071774 GO:0080090 GO:1903506 GO:1990904 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

414

Amino Acids

44.92

Weight (kDa)

7.1

Isoelectric Point (pI)

46.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004118)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17370 AT1G17370 AT1G54080 AT3G14100
fragaria_vesca	FvH4_1g09080 FvH4_6g35150
malus_domestica	MD02G1096200.v1.1 MD09G1178500.v1.1 MD17G1148300.v1.1
prunus_persica	Prupe.3G037700_v2.0.a1 Prupe.3G037700_v2.0.a1 Prupe.7G194700_v2.0.a1 Prupe.7G194700_v2.0.a1
pyrus_communis	pycom02g07600 pycom15g19550 pycom17g14160
rosa_chinensis	RchiOBHm_Chr2g0095491 RchiOBHm_Chr2g0146411
rosa_laevigata	RLG00000016572 RLG00000020198
rosa_multiflora	Rmu_sc0006076.1_g000007
rosa_roxburghii	Rroxscaffold_2G00100120 Rroxscaffold_2G00146260
rosa_rugosa	Rorug02G0051600 Rorug02G0394100 Rorug02G0394200
rosa_samantha	Rh2AG450900 Rh2BG100900 Rh2BG463300 Rh2CG437700 Rh2DG472300
rosa_wichuraiana	Rw2G007550 Rw2G036800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	632, 1163
AccBSI	CCGCTC	1 cut(s)	77
AccI	GTMKAC	2 cut(s)	601, 755
AciI	CCGC	9 cut(s)	75, 139, 215, 909, 1016, 1019, 1053, 1124, 1194
AclWI	GGATC	1 cut(s)	504
AcoI	YGGCCR	1 cut(s)	1050
AcsI	RAATTY	1 cut(s)	606
AcuI	CTGAAG	3 cut(s)	780, 924, 1163
AfaI	GTAC	5 cut(s)	53, 133, 208, 895, 1232
AfiI	CCNNNNNNNGG	1 cut(s)	221
AgsI	TTSAA	6 cut(s)	129, 191, 221, 468, 516, 845
AjnI	CCWGG	3 cut(s)	115, 991, 1039
AjuI	GAANNNNNNNTTGG	2 cut(s)	949, 981
AluBI	AGCT	8 cut(s)	232, 290, 685, 917, 1002, 1025, 1031, 1172
AluI	AGCT	8 cut(s)	232, 290, 685, 917, 1002, 1025, 1031, 1172
Alw21I	GWGCWC	1 cut(s)	1108
Alw44I	GTGCAC	1 cut(s)	1104
AlwI	GGATC	1 cut(s)	504
AlwNI	CAGNNNCTG	1 cut(s)	49
AoxI	GGCC	2 cut(s)	621, 1050
ApaLI	GTGCAC	1 cut(s)	1104
ApeKI	GCWGC	8 cut(s)	40, 290, 334, 1025, 1028, 1064, 1120, 1148
ApoI	RAATTY	1 cut(s)	606
Asp700I	GAANNNNTTC	1 cut(s)	183
AspS9I	GGNCC	2 cut(s)	212, 621
AsuHPI	GGTGA	2 cut(s)	155, 422
AvaII	GGWCC	1 cut(s)	212
AxyI	CCTNAGG	1 cut(s)	423
BaeGI	GKGCMC	1 cut(s)	1108
BanI	GGYRCC	2 cut(s)	632, 1163
BbsI	GAAGAC	1 cut(s)	711
Bbv12I	GWGCWC	1 cut(s)	1108
BbvI	GCAGC	8 cut(s)	52, 277, 346, 1012, 1040, 1051, 1107, 1160
BccI	CCATC	2 cut(s)	74, 816
BceAI	ACGGC	1 cut(s)	1207
BciT130I	CCWGG	3 cut(s)	117, 993, 1041
BciVI	GTATCC	1 cut(s)	373
BfaI	CTAG	4 cut(s)	204, 483, 936, 1173
BfmI	CTRYAG	3 cut(s)	759, 912, 1026
BfuI	GTATCC	1 cut(s)	373
BmcAI	AGTACT	1 cut(s)	208
Bme1390I	CCNGG	3 cut(s)	117, 993, 1041
Bme18I	GGWCC	1 cut(s)	212
BmgT120I	GGNCC	2 cut(s)	212, 621
BmiI	GGNNCC	3 cut(s)	634, 783, 1165
BmrFI	CCNGG	3 cut(s)	117, 993, 1041
BmrI	ACTGGG	1 cut(s)	516
BmsI	GCATC	7 cut(s)	27, 215, 331, 424, 469, 544, 721
BmuI	ACTGGG	1 cut(s)	516
BpiI	GAAGAC	1 cut(s)	711
BpmI	CTGGAG	2 cut(s)	720, 768
BpuEI	CTTGAG	1 cut(s)	118
BsaJI	CCNNGG	3 cut(s)	116, 826, 1152
Bsc4I	CCNNNNNNNGG	1 cut(s)	221
Bse1I	ACTGG	4 cut(s)	214, 511, 922, 1237
Bse21I	CCTNAGG	1 cut(s)	423
BseBI	CCWGG	3 cut(s)	117, 993, 1041
BseDI	CCNNGG	3 cut(s)	116, 826, 1152
BseGI	GGATG	3 cut(s)	230, 251, 559
BseLI	CCNNNNNNNGG	1 cut(s)	221
BseMII	CTCAG	4 cut(s)	95, 414, 764, 1079
BseNI	ACTGG	4 cut(s)	214, 511, 922, 1237
BseRI	GAGGAG	1 cut(s)	69
BseSI	GKGCMC	1 cut(s)	1108
BseX3I	CGGCCG	1 cut(s)	1050
BseXI	GCAGC	8 cut(s)	52, 277, 346, 1012, 1040, 1051, 1107, 1160
BseYI	CCCAGC	1 cut(s)	1218
Bsh1285I	CGRYCG	1 cut(s)	1053
BshFI	GGCC	2 cut(s)	623, 1052
BshNI	GGYRCC	2 cut(s)	632, 1163
BsiEI	CGRYCG	1 cut(s)	1053
BsiHKAI	GWGCWC	1 cut(s)	1108
BsiSI	CCGG	1 cut(s)	1167
BslI	CCNNNNNNNGG	1 cut(s)	221
BsmI	GAATGC	1 cut(s)	937
BsnI	GGCC	2 cut(s)	623, 1052
Bsp1286I	GDGCHC	1 cut(s)	1108
Bsp143I	GATC	5 cut(s)	277, 339, 412, 496, 1057
Bsp19I	CCATGG	1 cut(s)	1152
BspACI	CCGC	9 cut(s)	75, 139, 215, 909, 1016, 1019, 1053, 1124, 1194
BspANI	GGCC	2 cut(s)	623, 1052
BspCNI	CTCAG	4 cut(s)	94, 415, 763, 1080
BspLI	GGNNCC	3 cut(s)	634, 783, 1165
BspMAI	CTGCAG	1 cut(s)	1030
BspPI	GGATC	1 cut(s)	504
BspT107I	GGYRCC	2 cut(s)	632, 1163
BsrBI	CCGCTC	1 cut(s)	77
BsrI	ACTGG	4 cut(s)	214, 511, 922, 1237
BssECI	CCNNGG	3 cut(s)	116, 826, 1152
BssMI	GATC	5 cut(s)	277, 339, 412, 496, 1057
BssNAI	GTATAC	1 cut(s)	756
BssT1I	CCWWGG	2 cut(s)	826, 1152
Bst1107I	GTATAC	1 cut(s)	756
Bst2UI	CCWGG	3 cut(s)	117, 993, 1041
Bst4CI	ACNGT	2 cut(s)	710, 763
BstC8I	GCNNGC	7 cut(s)	30, 230, 320, 451, 980, 1023, 1137
BstDEI	CTNAG	6 cut(s)	70, 81, 416, 423, 750, 1088
BstDSI	CCRYGG	1 cut(s)	1152
BstEII	GGTNACC	1 cut(s)	427
BstF5I	GGATG	3 cut(s)	230, 251, 559
BstKTI	GATC	5 cut(s)	280, 342, 415, 499, 1060
BstMBI	GATC	5 cut(s)	277, 339, 412, 496, 1057
BstMCI	CGRYCG	1 cut(s)	1053
BstMWI	GCNNNNNNNGC	9 cut(s)	46, 71, 296, 563, 914, 1061, 1132, 1145, 1178
BstNI	CCWGG	3 cut(s)	117, 993, 1041
BstNSI	RCATGY	3 cut(s)	138, 453, 1139
BstPI	GGTNACC	1 cut(s)	427
BstSCI	CCNGG	3 cut(s)	115, 991, 1039
BstSFI	CTRYAG	3 cut(s)	759, 912, 1026
BstSLI	GKGCMC	1 cut(s)	1108
BstV1I	GCAGC	8 cut(s)	52, 277, 346, 1012, 1040, 1051, 1107, 1160
BstV2I	GAAGAC	1 cut(s)	711
BstXI	CCANNNNNNTGG	2 cut(s)	827, 1159
BstZ17I	GTATAC	1 cut(s)	756
BstZI	CGGCCG	1 cut(s)	1050
Bsu36I	CCTNAGG	1 cut(s)	423
BsuI	GTATCC	1 cut(s)	373
BsuRI	GGCC	2 cut(s)	623, 1052
BtgI	CCRYGG	1 cut(s)	1152
BtsCI	GGATG	3 cut(s)	230, 251, 559
BtsI	GCAGTG	1 cut(s)	148
BtsIMutI	CAGTG	2 cut(s)	148, 1085
Cac8I	GCNNGC	7 cut(s)	30, 230, 320, 451, 980, 1023, 1137
CaiI	CAGNNNCTG	1 cut(s)	49
Cfr13I	GGNCC	2 cut(s)	212, 621
Csp6I	GTAC	5 cut(s)	52, 132, 207, 894, 1231
CspCI	CAANNNNNGTGG	2 cut(s)	1081, 1116
CviAII	CATG	8 cut(s)	34, 135, 450, 969, 1117, 1136, 1153, 1228
CviQI	GTAC	5 cut(s)	52, 132, 207, 894, 1231
DdeI	CTNAG	6 cut(s)	70, 81, 416, 423, 750, 1088
DpnI	GATC	5 cut(s)	279, 341, 414, 498, 1059
DpnII	GATC	5 cut(s)	277, 339, 412, 496, 1057
EaeI	YGGCCR	1 cut(s)	1050
EagI	CGGCCG	1 cut(s)	1050
EciI	GGCGGA	1 cut(s)	1005
EclXI	CGGCCG	1 cut(s)	1050
Eco130I	CCWWGG	2 cut(s)	826, 1152
Eco47I	GGWCC	1 cut(s)	212
Eco52I	CGGCCG	1 cut(s)	1050
Eco57I	CTGAAG	3 cut(s)	780, 924, 1163
Eco81I	CCTNAGG	1 cut(s)	423
Eco91I	GGTNACC	1 cut(s)	427
EcoO65I	GGTNACC	1 cut(s)	427
EcoRII	CCWGG	3 cut(s)	115, 991, 1039
EcoT14I	CCWWGG	2 cut(s)	826, 1152
ErhI	CCWWGG	2 cut(s)	826, 1152
FaeI	CATG	8 cut(s)	37, 138, 453, 972, 1120, 1139, 1156, 1231
FatI	CATG	8 cut(s)	33, 134, 449, 968, 1116, 1135, 1152, 1227
FauNDI	CATATG	1 cut(s)	358
FblI	GTMKAC	2 cut(s)	601, 755
FokI	GGATG	3 cut(s)	237, 238, 566
FspBI	CTAG	4 cut(s)	204, 483, 936, 1173
GsaI	CCCAGC	1 cut(s)	1222
GsuI	CTGGAG	2 cut(s)	720, 768
HaeIII	GGCC	2 cut(s)	623, 1052
HapII	CCGG	1 cut(s)	1167
Hin1II	CATG	8 cut(s)	37, 138, 453, 972, 1120, 1139, 1156, 1231
HincII	GTYRAC	2 cut(s)	268, 802
HindII	GTYRAC	2 cut(s)	268, 802
HinfI	GANTC	4 cut(s)	125, 307, 665, 888
HpaII	CCGG	1 cut(s)	1167
HphI	GGTGA	2 cut(s)	155, 422
Hpy166II	GTNNAC	6 cut(s)	268, 602, 756, 802, 896, 1106
Hpy188I	TCNGA	9 cut(s)	84, 372, 478, 501, 542, 664, 703, 904, 1143
Hpy188III	TCNNGA	6 cut(s)	97, 191, 713, 737, 785, 1201
Hpy8I	GTNNAC	6 cut(s)	268, 602, 756, 802, 896, 1106
Hpy99I	CGWCG	1 cut(s)	1193
HpyAV	CCTTC	4 cut(s)	194, 215, 1022, 1138
HpyCH4III	ACNGT	2 cut(s)	710, 763
HpyCH4V	TGCA	8 cut(s)	4, 40, 228, 362, 449, 859, 1028, 1106
HpyF10VI	GCNNNNNNNGC	9 cut(s)	46, 71, 296, 563, 914, 1061, 1132, 1145, 1178
HpyF3I	CTNAG	6 cut(s)	70, 81, 416, 423, 750, 1088
Hsp92II	CATG	8 cut(s)	37, 138, 453, 972, 1120, 1139, 1156, 1231
Kzo9I	GATC	5 cut(s)	277, 339, 412, 496, 1057
LmnI	GCTCC	4 cut(s)	82, 739, 787, 1169
Lsp1109I	GCAGC	8 cut(s)	52, 277, 346, 1012, 1040, 1051, 1107, 1160
LweI	GCATC	7 cut(s)	27, 215, 331, 424, 469, 544, 721
MaeI	CTAG	4 cut(s)	204, 483, 936, 1173
MaeIII	GTNAC	5 cut(s)	172, 304, 389, 427, 790
MalI	GATC	5 cut(s)	279, 341, 414, 498, 1059
MbiI	CCGCTC	1 cut(s)	77
MboI	GATC	5 cut(s)	277, 339, 412, 496, 1057
MboII	GAAGA	4 cut(s)	179, 716, 740, 857
MhlI	GDGCHC	1 cut(s)	1108
MluCI	AATT	4 cut(s)	349, 606, 616, 957
MlyI	GAGTC	1 cut(s)	301
MmeI	TCCRAC	1 cut(s)	133
MroXI	GAANNNNTTC	1 cut(s)	183
MseI	TTAA	4 cut(s)	348, 396, 578, 960
MslI	CAYNNNNRTG	1 cut(s)	1157
MspA1I	CMGCKG	4 cut(s)	290, 911, 1025, 1055
MspI	CCGG	1 cut(s)	1167
MspR9I	CCNGG	3 cut(s)	117, 993, 1041
Mva1269I	GAATGC	1 cut(s)	937
MvaI	CCWGG	3 cut(s)	117, 993, 1041
MwoI	GCNNNNNNNGC	9 cut(s)	46, 71, 296, 563, 914, 1061, 1132, 1145, 1178
NcoI	CCATGG	1 cut(s)	1152
NdeI	CATATG	1 cut(s)	358
NdeII	GATC	5 cut(s)	277, 339, 412, 496, 1057
NlaIII	CATG	8 cut(s)	37, 138, 453, 972, 1120, 1139, 1156, 1231
NlaIV	GGNNCC	3 cut(s)	634, 783, 1165
NmeAIII	GCCGAG	1 cut(s)	1028
NmuCI	GTSAC	2 cut(s)	304, 389
NspI	RCATGY	3 cut(s)	138, 453, 1139
PaeI	GCATGC	2 cut(s)	453, 1139
PctI	GAATGC	1 cut(s)	937
PdmI	GAANNNNTTC	1 cut(s)	183
PfeI	GAWTC	3 cut(s)	125, 665, 888
PleI	GAGTC	1 cut(s)	301
PpsI	GAGTC	1 cut(s)	301
Psp6I	CCWGG	3 cut(s)	115, 991, 1039
PspEI	GGTNACC	1 cut(s)	427
PspFI	CCCAGC	1 cut(s)	1218
PspGI	CCWGG	3 cut(s)	115, 991, 1039
PspN4I	GGNNCC	3 cut(s)	634, 783, 1165
PspPI	GGNCC	2 cut(s)	212, 621
PsrI	GAACNNNNNNTAC	2 cut(s)	988, 1020
PstI	CTGCAG	1 cut(s)	1030
PstNI	CAGNNNCTG	1 cut(s)	49
PvuII	CAGCTG	2 cut(s)	290, 1025
RsaI	GTAC	5 cut(s)	53, 133, 208, 895, 1232
RsaNI	GTAC	5 cut(s)	52, 132, 207, 894, 1231
RseI	CAYNNNNRTG	1 cut(s)	1157
SaqAI	TTAA	4 cut(s)	348, 396, 578, 960
Sau3AI	GATC	5 cut(s)	277, 339, 412, 496, 1057
Sau96I	GGNCC	2 cut(s)	212, 621
ScaI	AGTACT	1 cut(s)	208
SchI	GAGTC	1 cut(s)	301
ScrFI	CCNGG	3 cut(s)	117, 993, 1041
SduI	GDGCHC	1 cut(s)	1108
SfaNI	GCATC	7 cut(s)	27, 215, 331, 424, 469, 544, 721
SfcI	CTRYAG	3 cut(s)	759, 912, 1026
SinI	GGWCC	1 cut(s)	212
SmiMI	CAYNNNNRTG	1 cut(s)	1157
SmlI	CTYRAG	1 cut(s)	97
SmoI	CTYRAG	1 cut(s)	97
SphI	GCATGC	2 cut(s)	453, 1139
Sse9I	AATT	4 cut(s)	349, 606, 616, 957
SsiI	CCGC	9 cut(s)	75, 139, 215, 909, 1016, 1019, 1053, 1124, 1194
SspI	AATATT	2 cut(s)	160, 400
SspMI	CTAG	4 cut(s)	204, 483, 936, 1173
StyD4I	CCNGG	3 cut(s)	115, 991, 1039
StyI	CCWWGG	2 cut(s)	826, 1152
TaaI	ACNGT	2 cut(s)	710, 763
TasI	AATT	4 cut(s)	349, 606, 616, 957
TatI	WGTACW	4 cut(s)	131, 206, 893, 1230
TauI	GCSGC	7 cut(s)	77, 141, 911, 1021, 1055, 1126, 1197
TfiI	GAWTC	3 cut(s)	125, 665, 888
Tru1I	TTAA	4 cut(s)	348, 396, 578, 960
Tru9I	TTAA	4 cut(s)	348, 396, 578, 960
TscAI	CASTG	2 cut(s)	148, 1092
TseFI	GTSAC	2 cut(s)	304, 389
TseI	GCWGC	8 cut(s)	40, 290, 334, 1025, 1028, 1064, 1120, 1148
Tsp45I	GTSAC	2 cut(s)	304, 389
TspDTI	ATGAA	3 cut(s)	741, 957, 1086
TspGWI	ACGGA	1 cut(s)	842
TspRI	CASTG	2 cut(s)	148, 1092
VneI	GTGCAC	1 cut(s)	1104
VpaK11BI	GGWCC	1 cut(s)	212
XapI	RAATTY	1 cut(s)	606
XceI	RCATGY	3 cut(s)	138, 453, 1139
XmiI	GTMKAC	2 cut(s)	601, 755
XmnI	GAANNNNTTC	1 cut(s)	183
XspI	CTAG	4 cut(s)	204, 483, 936, 1173
ZrmI	AGTACT	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.