Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0004118

Physical Location & Seq

Genomic Coordinates Reverse (-)

15261423 .. 15266007

Gene Structure 4585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1178500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGCAGCACCAGAGGCTGAAGCAGCAGCAGCAACAAGCTCTGATGCAGCAGGCTCTTCTCCAGCAGCATTCTCTCTACCACCCTGGCCTCTTAGCTCCTCCTCAGATAGAGCCAATCCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTACGTGGGGAACATCCATACCCAGGTGACAGAACCACTTCTTCAAGAGGTTTTTGCAAGTACTGGTGCTGTTGAAAGTTGCAAACTTATAAGAAAGGAAAAGTCATCCTATGGGTTCATTCACTATTTTGATCGCAGATCAGCTGCTCTTGCAATAGTGTCTCTCAATGGCAGGCATCTGTTTGGGCAGCCTATCAAAGTAAATTGGGCATATGCTAGTGGTCAGAGGGAGGATACATCAGGTCATTTCAACATTTTTGTCGGTGATCTCAGCCCTGAGGTTACTGATGCTACATTATTTGCATGCTTCTCTGTTTATAACAGTTGTTCAGATGCAAGGGTTATGTGGGATCAGAAGACGGGGCGTTCAAGAGGCTTTGGGTTTGTCTCATTCCGAATCCAACAGGATGCTCAAAATGCGATCAATGACTTAACTGGTAAGTGGCTCGGCAGCAGACAGATACGTTGCAACTGGGCAACAAAAGGTGCTGCCGCCAATGAAGACAAGCAGAGTTCAGATGCTAAAAGTGTGGTGGAACTAACAAATGGCACATCAGAAGATGGAAAGGACACGGCAAACAGTGAGGCTCCGGAGAACAACCCTCAGTATACTACTGTTTACGTGGGCAATCTTGCTCCAGAGGTCAGTCAGCTTGATCTGCATCGCCATTTTCATGCTCTTGGTGTTGGAGTGATTGAGGAAGTTCGGCTGCAGCGTGACAAGGGCTTTGGTTTTGTGAGATTCAATACCCACTCTGAGGCAGCTCTGGCTATTCAAATGGGAAACACTCAGTCCATCTTGTGTGGTAGACAAATAAAGTGTTCTTGGGGTAGCAAGCCTACTCCACCAGGAACAGTTTCAAACCCACTCCCTCCGCCAGTGGCAGCAGCACCTTTGCCGGGCCTCTCTGCAACCGACCTTTTGGCCTATGAACGGCAACTGGCAATGAGCAAGATGGGTGGTGTCCATTCCCTCATGCACCCTCAGGGACAGCATCCCCTTAAGCAGGCAGCATTGGGAATGGGCACAGCTGGAGCAAGCCAAGCTATATACGACGGTGGATTCCAGAATGTTGCTGCTGCCCAGCAGCTCATGTACTACCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005764 GO:0005773 GO:0006355 GO:0006357 GO:0006915 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0008150 GO:0008219 GO:0008543 GO:0009719 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010494 GO:0010556 GO:0012501 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0035770 GO:0036464 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044344 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070848 GO:0070887 GO:0071310 GO:0071363 GO:0071495 GO:0071774 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:1990904 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

425

Amino Acids

46.21

Weight (kDa)

7.68

Isoelectric Point (pI)

48.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	56 - 122	2.1e-12	RNA recognition motif
RRM_1	PF00076	141 - 211	1.1e-16	RNA recognition motif
RRM_1	PF00076	262 - 328	8.4e-12	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004118)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17370 AT1G17370 AT1G54080 AT3G14100
fragaria_vesca	FvH4_1g09080 FvH4_6g35150
malus_domestica	MD02G1096200.v1.1 MD09G1178500.v1.1 MD17G1148300.v1.1
prunus_persica	Prupe.3G037700_v2.0.a1 Prupe.3G037700_v2.0.a1 Prupe.7G194700_v2.0.a1 Prupe.7G194700_v2.0.a1
pyrus_communis	pycom02g07600 pycom15g19550 pycom17g14160
rosa_chinensis	RchiOBHm_Chr2g0095491 RchiOBHm_Chr2g0146411
rosa_laevigata	RLG00000016572 RLG00000020198
rosa_multiflora	Rmu_sc0006076.1_g000007
rosa_roxburghii	Rroxscaffold_2G00100120 Rroxscaffold_2G00146260
rosa_rugosa	Rorug02G0051600 Rorug02G0394100 Rorug02G0394200
rosa_samantha	Rh2AG450900 Rh2BG100900 Rh2BG463300 Rh2CG437700 Rh2DG472300
rosa_wichuraiana	Rw2G007550 Rw2G036800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	257, 486
AccI	GTMKAC	2 cut(s)	776, 976
AccIII	TCCGGA	1 cut(s)	757
AciI	CCGC	3 cut(s)	160, 660, 1043
AclWI	GGATC	2 cut(s)	140, 525
AcuI	CTGAAG	1 cut(s)	38
AfaI	GTAC	4 cut(s)	154, 170, 229, 1265
AfiI	CCNNNNNNNGG	5 cut(s)	190, 925, 1067, 1101, 1174
AflII	CTTAAG	1 cut(s)	1169
AgsI	TTSAA	7 cut(s)	212, 242, 418, 537, 913, 944, 1029
AjnI	CCWGG	4 cut(s)	82, 136, 189, 1015
AluBI	AGCT	8 cut(s)	38, 95, 311, 820, 932, 1199, 1214, 1258
AluI	AGCT	8 cut(s)	38, 95, 311, 820, 932, 1199, 1214, 1258
Alw26I	GTCTC	2 cut(s)	333, 559
AlwI	GGATC	2 cut(s)	140, 525
AlwNI	CAGNNNCTG	1 cut(s)	16
Aor13HI	TCCGGA	1 cut(s)	757
AoxI	GGCC	3 cut(s)	85, 1069, 1092
ArsI	GACNNNNNNTTYG	2 cut(s)	878, 910
Asp700I	GAANNNNTTC	2 cut(s)	204, 1024
AspS9I	GGNCC	1 cut(s)	1069
AsuC2I	CCSGG	1 cut(s)	1068
AsuHPI	GGTGA	2 cut(s)	205, 443
AxyI	CCTNAGG	2 cut(s)	444, 1152
BaeGI	GKGCMC	1 cut(s)	1196
BbsI	GAAGAC	2 cut(s)	530, 675
BccI	CCATC	3 cut(s)	722, 971, 1117
BceAI	ACGGC	2 cut(s)	756, 1118
BciT130I	CCWGG	4 cut(s)	84, 138, 191, 1017
BciVI	GTATCC	1 cut(s)	394
BcnI	CCSGG	1 cut(s)	1068
BcoDI	GTCTC	2 cut(s)	333, 559
BfaI	CTAG	1 cut(s)	384
BfmI	CTRYAG	1 cut(s)	878
BfrI	CTTAAG	1 cut(s)	1169
BfuI	GTATCC	1 cut(s)	394
BmcAI	AGTACT	2 cut(s)	154, 229
Bme1390I	CCNGG	5 cut(s)	84, 138, 191, 1017, 1068
BmgT120I	GGNCC	1 cut(s)	1069
BmiI	GGNNCC	1 cut(s)	756
BmrFI	CCNGG	5 cut(s)	84, 138, 191, 1017, 1068
BmrI	ACTGGG	1 cut(s)	649
BmsI	GCATC	8 cut(s)	33, 352, 445, 490, 565, 676, 838, 1171
BmuI	ACTGGG	1 cut(s)	649
BpiI	GAAGAC	2 cut(s)	530, 675
BpmI	CTGGAG	3 cut(s)	44, 789, 1221
BpuMI	CCSGG	1 cut(s)	1068
BsaAI	YACGTR	2 cut(s)	172, 790
BsaBI	GATNNNNATC	1 cut(s)	828
BsaJI	CCNNGG	2 cut(s)	82, 189
BsaWI	WCCGGW	1 cut(s)	757
Bsc4I	CCNNNNNNNGG	5 cut(s)	190, 925, 1067, 1101, 1174
Bse1I	ACTGG	6 cut(s)	235, 607, 644, 1046, 1113, 1270
Bse21I	CCTNAGG	2 cut(s)	444, 1152
Bse3DI	GCAATG	1 cut(s)	1119
Bse8I	GATNNNNATC	1 cut(s)	828
BseAI	TCCGGA	1 cut(s)	757
BseBI	CCWGG	4 cut(s)	84, 138, 191, 1017
BseDI	CCNNGG	2 cut(s)	82, 189
BseGI	GGATG	4 cut(s)	180, 272, 580, 1162
BseJI	GATNNNNATC	1 cut(s)	828
BseLI	CCNNNNNNNGG	5 cut(s)	190, 925, 1067, 1101, 1174
BseMI	GCAATG	1 cut(s)	1119
BseMII	CTCAG	7 cut(s)	116, 435, 451, 785, 915, 971, 1166
BseNI	ACTGG	6 cut(s)	235, 607, 644, 1046, 1113, 1270
BseRI	GAGGAG	2 cut(s)	87, 90
BseSI	GKGCMC	1 cut(s)	1196
BseYI	CCCAGC	1 cut(s)	1251
BshFI	GGCC	3 cut(s)	87, 1071, 1094
BsiSI	CCGG	2 cut(s)	758, 1067
BslFI	GGGAC	1 cut(s)	1170
BslI	CCNNNNNNNGG	5 cut(s)	190, 925, 1067, 1101, 1174
BsmAI	GTCTC	2 cut(s)	333, 559
BsmFI	GGGAC	1 cut(s)	1170
BsmI	GAATGC	1 cut(s)	67
BsnI	GGCC	3 cut(s)	87, 1071, 1094
Bsp1286I	GDGCHC	1 cut(s)	1196
Bsp13I	TCCGGA	1 cut(s)	757
Bsp143I	GATC	7 cut(s)	145, 298, 305, 433, 517, 588, 823
BspACI	CCGC	3 cut(s)	160, 660, 1043
BspANI	GGCC	3 cut(s)	87, 1071, 1094
BspCNI	CTCAG	7 cut(s)	115, 436, 450, 784, 916, 970, 1165
BspEI	TCCGGA	1 cut(s)	757
BspLI	GGNNCC	1 cut(s)	756
BspMAI	CTGCAG	1 cut(s)	882
BspPI	GGATC	2 cut(s)	140, 525
BspQI	GCTCTTC	1 cut(s)	60
BspTI	CTTAAG	1 cut(s)	1169
BsrDI	GCAATG	1 cut(s)	1119
BsrI	ACTGG	6 cut(s)	235, 607, 644, 1046, 1113, 1270
BssECI	CCNNGG	2 cut(s)	82, 189
BssMI	GATC	7 cut(s)	145, 298, 305, 433, 517, 588, 823
BssNAI	GTATAC	1 cut(s)	777
Bst1107I	GTATAC	1 cut(s)	777
Bst2UI	CCWGG	4 cut(s)	84, 138, 191, 1017
Bst4CI	ACNGT	5 cut(s)	491, 749, 784, 1024, 1226
Bst6I	CTCTTC	1 cut(s)	60
BstAFI	CTTAAG	1 cut(s)	1169
BstBAI	YACGTR	2 cut(s)	172, 790
BstC8I	GCNNGC	6 cut(s)	51, 341, 472, 1004, 1176, 1207
BstDEI	CTNAG	8 cut(s)	91, 102, 437, 444, 771, 924, 957, 1152
BstENI	CCTNNNNNAGG	1 cut(s)	1172
BstF5I	GGATG	4 cut(s)	180, 272, 580, 1162
BstKTI	GATC	7 cut(s)	148, 301, 308, 436, 520, 591, 826
BstMAI	GTCTC	2 cut(s)	333, 559
BstMBI	GATC	7 cut(s)	145, 298, 305, 433, 517, 588, 823
BstMWI	GCNNNNNNNGC	8 cut(s)	13, 22, 28, 317, 584, 826, 935, 1211
BstNI	CCWGG	4 cut(s)	84, 138, 191, 1017
BstNSI	RCATGY	1 cut(s)	474
BstSCI	CCNGG	5 cut(s)	82, 136, 189, 1015, 1066
BstSFI	CTRYAG	1 cut(s)	878
BstSLI	GKGCMC	1 cut(s)	1196
BstV2I	GAAGAC	2 cut(s)	530, 675
BstZ17I	GTATAC	1 cut(s)	777
Bsu36I	CCTNAGG	2 cut(s)	444, 1152
BsuI	GTATCC	1 cut(s)	394
BsuRI	GGCC	3 cut(s)	87, 1071, 1094
BtgZI	GCGATG	1 cut(s)	815
BtsCI	GGATG	4 cut(s)	180, 272, 580, 1162
BtsI	GCAGTG	1 cut(s)	169
BtsIMutI	CAGTG	3 cut(s)	169, 754, 1053
Cac8I	GCNNGC	6 cut(s)	51, 341, 472, 1004, 1176, 1207
CaiI	CAGNNNCTG	1 cut(s)	16
Cfr13I	GGNCC	1 cut(s)	1069
Csp6I	GTAC	4 cut(s)	153, 169, 228, 1264
CspCI	CAANNNNNGTGG	2 cut(s)	1108, 1143
CviAII	CATG	4 cut(s)	471, 842, 1144, 1261
CviQI	GTAC	4 cut(s)	153, 169, 228, 1264
DdeI	CTNAG	8 cut(s)	91, 102, 437, 444, 771, 924, 957, 1152
DpnI	GATC	7 cut(s)	147, 300, 307, 435, 519, 590, 825
DpnII	GATC	7 cut(s)	145, 298, 305, 433, 517, 588, 823
Eam1104I	CTCTTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	60
EciI	GGCGGA	1 cut(s)	1032
Eco57I	CTGAAG	1 cut(s)	38
Eco81I	CCTNAGG	2 cut(s)	444, 1152
EcoNI	CCTNNNNNAGG	1 cut(s)	1172
EcoRII	CCWGG	4 cut(s)	82, 136, 189, 1015
FaeI	CATG	4 cut(s)	474, 845, 1147, 1264
FaqI	GGGAC	1 cut(s)	1170
FatI	CATG	4 cut(s)	470, 841, 1143, 1260
FauNDI	CATATG	1 cut(s)	379
FblI	GTMKAC	2 cut(s)	776, 976
FokI	GGATG	4 cut(s)	167, 259, 587, 1149
FspBI	CTAG	1 cut(s)	384
GsaI	CCCAGC	1 cut(s)	1255
GsuI	CTGGAG	3 cut(s)	44, 789, 1221
HaeIII	GGCC	3 cut(s)	87, 1071, 1094
HapII	CCGG	2 cut(s)	758, 1067
Hin1II	CATG	4 cut(s)	474, 845, 1147, 1264
HinfI	GANTC	3 cut(s)	564, 909, 1230
HpaII	CCGG	2 cut(s)	758, 1067
HphI	GGTGA	2 cut(s)	205, 443
Hpy166II	GTNNAC	4 cut(s)	169, 777, 787, 977
Hpy188I	TCNGA	9 cut(s)	42, 105, 393, 499, 522, 563, 685, 724, 925
Hpy188III	TCNNGA	5 cut(s)	212, 537, 758, 806, 1234
Hpy8I	GTNNAC	4 cut(s)	169, 777, 787, 977
Hpy99I	CGWCG	1 cut(s)	1226
HpyCH4III	ACNGT	5 cut(s)	491, 749, 784, 1024, 1226
HpyCH4IV	ACGT	3 cut(s)	171, 631, 789
HpyF10VI	GCNNNNNNNGC	8 cut(s)	13, 22, 28, 317, 584, 826, 935, 1211
HpyF3I	CTNAG	8 cut(s)	91, 102, 437, 444, 771, 924, 957, 1152
HpySE526I	ACGT	3 cut(s)	171, 631, 789
Hsp92II	CATG	4 cut(s)	474, 845, 1147, 1264
Kpn2I	TCCGGA	1 cut(s)	757
Kzo9I	GATC	7 cut(s)	145, 298, 305, 433, 517, 588, 823
LguI	GCTCTTC	1 cut(s)	60
LmnI	GCTCC	4 cut(s)	100, 760, 808, 1202
LweI	GCATC	8 cut(s)	33, 352, 445, 490, 565, 676, 838, 1171
MaeI	CTAG	1 cut(s)	384
MaeII	ACGT	3 cut(s)	171, 631, 789
MaeIII	GTNAC	3 cut(s)	193, 448, 884
MalI	GATC	7 cut(s)	147, 300, 307, 435, 519, 590, 825
MboI	GATC	7 cut(s)	145, 298, 305, 433, 517, 588, 823
MboII	GAAGA	5 cut(s)	47, 200, 535, 680, 737
MhlI	GDGCHC	1 cut(s)	1196
MluCI	AATT	1 cut(s)	370
MmeI	TCCRAC	2 cut(s)	592, 835
MroI	TCCGGA	1 cut(s)	757
MroXI	GAANNNNTTC	2 cut(s)	204, 1024
MseI	TTAA	2 cut(s)	599, 1170
MslI	CAYNNNNRTG	1 cut(s)	840
MspA1I	CMGCKG	2 cut(s)	311, 1199
MspCI	CTTAAG	1 cut(s)	1169
MspI	CCGG	2 cut(s)	758, 1067
MspR9I	CCNGG	5 cut(s)	84, 138, 191, 1017, 1068
Mva1269I	GAATGC	1 cut(s)	67
MvaI	CCWGG	4 cut(s)	84, 138, 191, 1017
MwoI	GCNNNNNNNGC	8 cut(s)	13, 22, 28, 317, 584, 826, 935, 1211
NciI	CCSGG	1 cut(s)	1068
NdeI	CATATG	1 cut(s)	379
NdeII	GATC	7 cut(s)	145, 298, 305, 433, 517, 588, 823
NlaIII	CATG	4 cut(s)	474, 845, 1147, 1264
NlaIV	GGNNCC	1 cut(s)	756
NmeAIII	GCCGAG	1 cut(s)	594
NmuCI	GTSAC	2 cut(s)	193, 884
NspI	RCATGY	1 cut(s)	474
PaeI	GCATGC	1 cut(s)	474
PciSI	GCTCTTC	1 cut(s)	60
PcsI	WCGNNNNNNNCGW	1 cut(s)	880
PctI	GAATGC	1 cut(s)	67
PdmI	GAANNNNTTC	2 cut(s)	204, 1024
PfeI	GAWTC	3 cut(s)	564, 909, 1230
Ppu21I	YACGTR	2 cut(s)	172, 790
PsiI	TTATAA	2 cut(s)	257, 486
Psp6I	CCWGG	4 cut(s)	82, 136, 189, 1015
PspFI	CCCAGC	1 cut(s)	1251
PspGI	CCWGG	4 cut(s)	82, 136, 189, 1015
PspN4I	GGNNCC	1 cut(s)	756
PspPI	GGNCC	1 cut(s)	1069
PstI	CTGCAG	1 cut(s)	882
PstNI	CAGNNNCTG	1 cut(s)	16
PvuII	CAGCTG	2 cut(s)	311, 1199
RsaI	GTAC	4 cut(s)	154, 170, 229, 1265
RsaNI	GTAC	4 cut(s)	153, 169, 228, 1264
RseI	CAYNNNNRTG	1 cut(s)	840
SapI	GCTCTTC	1 cut(s)	60
SaqAI	TTAA	2 cut(s)	599, 1170
Sau3AI	GATC	7 cut(s)	145, 298, 305, 433, 517, 588, 823
Sau96I	GGNCC	1 cut(s)	1069
ScaI	AGTACT	2 cut(s)	154, 229
ScrFI	CCNGG	5 cut(s)	84, 138, 191, 1017, 1068
SduI	GDGCHC	1 cut(s)	1196
SfaNI	GCATC	8 cut(s)	33, 352, 445, 490, 565, 676, 838, 1171
SfcI	CTRYAG	1 cut(s)	878
SmiMI	CAYNNNNRTG	1 cut(s)	840
SmlI	CTYRAG	1 cut(s)	1169
SmoI	CTYRAG	1 cut(s)	1169
SphI	GCATGC	1 cut(s)	474
Sse9I	AATT	1 cut(s)	370
SsiI	CCGC	3 cut(s)	160, 660, 1043
SspMI	CTAG	1 cut(s)	384
StyD4I	CCNGG	5 cut(s)	82, 136, 189, 1015, 1066
TaaI	ACNGT	5 cut(s)	491, 749, 784, 1024, 1226
TaiI	ACGT	3 cut(s)	174, 634, 792
TasI	AATT	1 cut(s)	370
TatI	WGTACW	3 cut(s)	152, 227, 1263
TauI	GCSGC	2 cut(s)	162, 662
TfiI	GAWTC	3 cut(s)	564, 909, 1230
Tru1I	TTAA	2 cut(s)	599, 1170
Tru9I	TTAA	2 cut(s)	599, 1170
TscAI	CASTG	3 cut(s)	169, 754, 1053
TseFI	GTSAC	2 cut(s)	193, 884
Tsp45I	GTSAC	2 cut(s)	193, 884
TspDTI	ATGAA	4 cut(s)	274, 681, 830, 1113
TspRI	CASTG	3 cut(s)	169, 754, 1053
Vha464I	CTTAAG	1 cut(s)	1169
XagI	CCTNNNNNAGG	1 cut(s)	1172
XceI	RCATGY	1 cut(s)	474
XmiI	GTMKAC	2 cut(s)	776, 976
XmnI	GAANNNNTTC	2 cut(s)	204, 1024
XspI	CTAG	1 cut(s)	384
ZrmI	AGTACT	2 cut(s)	154, 229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.