Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0004118

Physical Location & Seq

Genomic Coordinates Forward (+)

11718488 .. 11722647

Gene Structure 4160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g14160.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGCAGCACCAGAGGCTGAAGCAGCAACAGCAGCAGCAGCAAGCTCTGATGCAGCAGGCTCTTCTACAGCAGCATCCTCTCTACCACCCTGGCCTCTTAGCTCCTCCTCAGATAGAGCCAATCCCAAGTGGAAATCTGCCTCCTGGTATCGATCCAAGTACTTGCCGCAGTGTGTATGTTGGGAACATCCATACCCAGGTGACAGAACCACTTCTTCAAGAGGTTTTTGCAAGTACTGGTGCTGTTGAAAATTGCAAACTTATAAGAAAGGAAAAGTCATCCTACGGGTTCATTCACTATTTTGATCGTAGATCAGCTGCTCTTGCGATAGTGTCTCTAAATGGCAGGCATCTGTTTGGGCAGCCTATCAAAGTAAATTGGGCTTATGCTAGTGGTCAGAGGGAGGATACATCAGGTCATTTCAACATTTTTGTTGGTGATCTGAGCCCTGAGGTTACTGATGCTACATTATTTGCATGCTTCTCTGTTTATAACAGTTGTTCAGATGCAAGGGTTATGTGGGATCAAAAGACGGGGCGTTCAAGAGGCTTTGGGTTCGTCTCATTCCGAAACCAACAGGATGCTCAAAATGCTATCAATGACTTAACTGGTAAGTGGCTTGGCAGCAGACAGATACGTTGCAACTGGGCAATGAAAGGTGCTGGTGCCAATGAAGACAAGCAGAGTTCAGATGCTAAAAGTGTGGTGGAACTAACAAATGGCTCATCAGAAGATGGAAAGGACACGACAAACAGTGAGGCTCCGGAGAACAACCCTCAGTATACTACTGTTTATGTGGGCAATCTTGCTCCAGAGGTCAGTCAGCTCGATCTGCATCGGCATTTTCATGCCCTTGGTGTTGGAGTGATTGAGGAAGTTCGGCTGCAGCGTGACAAGGGCTTTGGTTTTGTGAGATTCAATACACACGCTGAGGCAACTCTGGCAATTCAAATGGGAAATACTCAGTCCATCTTGTGTGGTAGACAAATAAAGTGCTCATGGGGTAGCAAGCCTACTCCACCAGGAACAGTTTCAAACCCACTCCCACCGCCAGTAGCGGCACCACCTTTGCAGGGCCTCTCTGCAACCGACATTTTGGCCTATGAACGGCAACTGACAATGAGCAAGATGGCTGGTGTCCATGCCCTCATGCACCCTCAGGGACAGCATCCCCTTAAGCAGGCAGCAATGGGAATGGGCACTGCTGGAGCAAGCCAAGCTATATACGACGGTGGATTCCAGAATGTTGCTGCTGCCCAGCAGCTCATGTACTACCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005764 GO:0005773 GO:0006355 GO:0006357 GO:0006915 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0008150 GO:0008219 GO:0008543 GO:0009719 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010494 GO:0010556 GO:0012501 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0035770 GO:0036464 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044344 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070848 GO:0070887 GO:0071310 GO:0071363 GO:0071495 GO:0071774 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:1990904 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

427

Amino Acids

46.62

Weight (kDa)

7.68

Isoelectric Point (pI)

47.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004118)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17370 AT1G17370 AT1G54080 AT3G14100
fragaria_vesca	FvH4_1g09080 FvH4_6g35150
malus_domestica	MD02G1096200.v1.1 MD09G1178500.v1.1 MD17G1148300.v1.1
prunus_persica	Prupe.3G037700_v2.0.a1 Prupe.3G037700_v2.0.a1 Prupe.7G194700_v2.0.a1 Prupe.7G194700_v2.0.a1
pyrus_communis	pycom02g07600 pycom15g19550 pycom17g14160
rosa_chinensis	RchiOBHm_Chr2g0095491 RchiOBHm_Chr2g0146411
rosa_laevigata	RLG00000016572 RLG00000020198
rosa_multiflora	Rmu_sc0006076.1_g000007
rosa_roxburghii	Rroxscaffold_2G00100120 Rroxscaffold_2G00146260
rosa_rugosa	Rorug02G0051600 Rorug02G0394100 Rorug02G0394200
rosa_samantha	Rh2AG450900 Rh2BG100900 Rh2BG463300 Rh2CG437700 Rh2DG472300
rosa_wichuraiana	Rw2G007550 Rw2G036800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	263, 492
AccB1I	GGYRCC	2 cut(s)	665, 1060
AccI	GTMKAC	2 cut(s)	782, 982
AccIII	TCCGGA	1 cut(s)	763
AciI	CCGC	3 cut(s)	166, 1049, 1058
AclWI	GGATC	2 cut(s)	146, 531
AcuI	CTGAAG	1 cut(s)	38
AfaI	GTAC	3 cut(s)	160, 235, 1271
AfiI	CCNNNNNNNGG	4 cut(s)	196, 1073, 1107, 1180
AflII	CTTAAG	1 cut(s)	1175
AgsI	TTSAA	7 cut(s)	218, 248, 424, 543, 919, 950, 1035
AjnI	CCWGG	4 cut(s)	88, 142, 195, 1021
AluBI	AGCT	6 cut(s)	44, 101, 317, 826, 1220, 1264
AluI	AGCT	6 cut(s)	44, 101, 317, 826, 1220, 1264
Alw21I	GWGCWC	1 cut(s)	998
Alw26I	GTCTC	2 cut(s)	339, 565
AlwI	GGATC	2 cut(s)	146, 531
AlwNI	CAGNNNCTG	1 cut(s)	16
Aor13HI	TCCGGA	1 cut(s)	763
AoxI	GGCC	3 cut(s)	91, 1075, 1098
ArsI	GACNNNNNNTTYG	2 cut(s)	884, 916
Asp700I	GAANNNNTTC	2 cut(s)	210, 1030
AspS9I	GGNCC	1 cut(s)	1075
AsuHPI	GGTGA	2 cut(s)	211, 449
AxyI	CCTNAGG	2 cut(s)	450, 1158
BaeGI	GKGCMC	1 cut(s)	1202
BanI	GGYRCC	2 cut(s)	665, 1060
BanII	GRGCYC	1 cut(s)	449
BbsI	GAAGAC	1 cut(s)	681
Bbv12I	GWGCWC	1 cut(s)	998
BbvCI	CCTCAGC	1 cut(s)	930
BccI	CCATC	3 cut(s)	728, 977, 1123
BceAI	ACGGC	1 cut(s)	1124
BciT130I	CCWGG	4 cut(s)	90, 144, 197, 1023
BciVI	GTATCC	1 cut(s)	400
BcoDI	GTCTC	2 cut(s)	339, 565
BfaI	CTAG	1 cut(s)	390
BfmI	CTRYAG	2 cut(s)	65, 884
BfrI	CTTAAG	1 cut(s)	1175
BfuI	GTATCC	1 cut(s)	400
BmcAI	AGTACT	2 cut(s)	160, 235
Bme1390I	CCNGG	4 cut(s)	90, 144, 197, 1023
BmgT120I	GGNCC	1 cut(s)	1075
BmiI	GGNNCC	3 cut(s)	667, 762, 1062
BmrFI	CCNGG	4 cut(s)	90, 144, 197, 1023
BmrI	ACTGGG	1 cut(s)	655
BmsI	GCATC	9 cut(s)	39, 82, 358, 451, 496, 571, 682, 844, 1177
BmuI	ACTGGG	1 cut(s)	655
BpiI	GAAGAC	1 cut(s)	681
BpmI	CTGGAG	2 cut(s)	795, 1227
Bpu10I	CCTNAGC	1 cut(s)	930
Bsa29I	ATCGAT	1 cut(s)	150
BsaBI	GATNNNNATC	1 cut(s)	834
BsaJI	CCNNGG	3 cut(s)	88, 195, 853
BsaWI	WCCGGW	1 cut(s)	763
Bsc4I	CCNNNNNNNGG	4 cut(s)	196, 1073, 1107, 1180
Bse1I	ACTGG	5 cut(s)	241, 613, 650, 1052, 1276
Bse21I	CCTNAGG	2 cut(s)	450, 1158
Bse3DI	GCAATG	2 cut(s)	657, 1194
Bse8I	GATNNNNATC	1 cut(s)	834
BseAI	TCCGGA	1 cut(s)	763
BseBI	CCWGG	4 cut(s)	90, 144, 197, 1023
BseCI	ATCGAT	1 cut(s)	150
BseDI	CCNNGG	3 cut(s)	88, 195, 853
BseGI	GGATG	5 cut(s)	73, 186, 278, 586, 1168
BseJI	GATNNNNATC	1 cut(s)	834
BseLI	CCNNNNNNNGG	4 cut(s)	196, 1073, 1107, 1180
BseMI	GCAATG	2 cut(s)	657, 1194
BseMII	CTCAG	7 cut(s)	122, 434, 441, 791, 921, 977, 1172
BseNI	ACTGG	5 cut(s)	241, 613, 650, 1052, 1276
BseRI	GAGGAG	2 cut(s)	93, 96
BseSI	GKGCMC	1 cut(s)	1202
BseYI	CCCAGC	1 cut(s)	1257
BshFI	GGCC	3 cut(s)	93, 1077, 1100
BshNI	GGYRCC	2 cut(s)	665, 1060
BshVI	ATCGAT	1 cut(s)	150
BsiHKAI	GWGCWC	1 cut(s)	998
BsiSI	CCGG	1 cut(s)	764
BslFI	GGGAC	1 cut(s)	1176
BslI	CCNNNNNNNGG	4 cut(s)	196, 1073, 1107, 1180
BsmAI	GTCTC	2 cut(s)	339, 565
BsmBI	CGTCTC	1 cut(s)	565
BsmFI	GGGAC	1 cut(s)	1176
BsnI	GGCC	3 cut(s)	93, 1077, 1100
Bsp1286I	GDGCHC	3 cut(s)	449, 998, 1202
Bsp13I	TCCGGA	1 cut(s)	763
Bsp143I	GATC	6 cut(s)	151, 304, 311, 439, 523, 829
BspACI	CCGC	3 cut(s)	166, 1049, 1058
BspANI	GGCC	3 cut(s)	93, 1077, 1100
BspCNI	CTCAG	7 cut(s)	121, 435, 442, 790, 922, 976, 1171
BspDI	ATCGAT	1 cut(s)	150
BspEI	TCCGGA	1 cut(s)	763
BspLI	GGNNCC	3 cut(s)	667, 762, 1062
BspMAI	CTGCAG	1 cut(s)	888
BspPI	GGATC	2 cut(s)	146, 531
BspQI	GCTCTTC	1 cut(s)	66
BspT107I	GGYRCC	2 cut(s)	665, 1060
BspTI	CTTAAG	1 cut(s)	1175
BsrDI	GCAATG	2 cut(s)	657, 1194
BsrI	ACTGG	5 cut(s)	241, 613, 650, 1052, 1276
BssECI	CCNNGG	3 cut(s)	88, 195, 853
BssMI	GATC	6 cut(s)	151, 304, 311, 439, 523, 829
BssNAI	GTATAC	1 cut(s)	783
BssT1I	CCWWGG	1 cut(s)	853
Bst1107I	GTATAC	1 cut(s)	783
Bst2UI	CCWGG	4 cut(s)	90, 144, 197, 1023
Bst4CI	ACNGT	5 cut(s)	497, 755, 790, 1030, 1232
Bst6I	CTCTTC	1 cut(s)	66
BstAFI	CTTAAG	1 cut(s)	1175
BstC8I	GCNNGC	7 cut(s)	42, 57, 347, 478, 1010, 1182, 1213
BstDEI	CTNAG	8 cut(s)	97, 108, 443, 450, 777, 930, 963, 1158
BstENI	CCTNNNNNAGG	1 cut(s)	1178
BstF5I	GGATG	5 cut(s)	73, 186, 278, 586, 1168
BstKTI	GATC	6 cut(s)	154, 307, 314, 442, 526, 832
BstMAI	GTCTC	2 cut(s)	339, 565
BstMBI	GATC	6 cut(s)	151, 304, 311, 439, 523, 829
BstNI	CCWGG	4 cut(s)	90, 144, 197, 1023
BstNSI	RCATGY	1 cut(s)	480
BstSCI	CCNGG	4 cut(s)	88, 142, 195, 1021
BstSFI	CTRYAG	2 cut(s)	65, 884
BstSLI	GKGCMC	1 cut(s)	1202
BstV2I	GAAGAC	1 cut(s)	681
BstZ17I	GTATAC	1 cut(s)	783
Bsu15I	ATCGAT	1 cut(s)	150
Bsu36I	CCTNAGG	2 cut(s)	450, 1158
BsuI	GTATCC	1 cut(s)	400
BsuRI	GGCC	3 cut(s)	93, 1077, 1100
BsuTUI	ATCGAT	1 cut(s)	150
BtsCI	GGATG	5 cut(s)	73, 186, 278, 586, 1168
BtsI	GCAGTG	2 cut(s)	175, 1200
BtsIMutI	CAGTG	3 cut(s)	175, 760, 1200
Cac8I	GCNNGC	7 cut(s)	42, 57, 347, 478, 1010, 1182, 1213
CaiI	CAGNNNCTG	1 cut(s)	16
Cfr13I	GGNCC	1 cut(s)	1075
ClaI	ATCGAT	1 cut(s)	150
Csp6I	GTAC	3 cut(s)	159, 234, 1270
CviAII	CATG	6 cut(s)	477, 848, 999, 1142, 1150, 1267
CviQI	GTAC	3 cut(s)	159, 234, 1270
DdeI	CTNAG	8 cut(s)	97, 108, 443, 450, 777, 930, 963, 1158
DpnI	GATC	6 cut(s)	153, 306, 313, 441, 525, 831
DpnII	GATC	6 cut(s)	151, 304, 311, 439, 523, 829
Eam1104I	CTCTTC	1 cut(s)	66
EarI	CTCTTC	1 cut(s)	66
Eco130I	CCWWGG	1 cut(s)	853
Eco24I	GRGCYC	1 cut(s)	449
Eco57I	CTGAAG	1 cut(s)	38
Eco81I	CCTNAGG	2 cut(s)	450, 1158
EcoNI	CCTNNNNNAGG	1 cut(s)	1178
EcoO109I	RGGNCCY	1 cut(s)	1075
EcoRII	CCWGG	4 cut(s)	88, 142, 195, 1021
EcoT14I	CCWWGG	1 cut(s)	853
EcoT38I	GRGCYC	1 cut(s)	449
ErhI	CCWWGG	1 cut(s)	853
Esp3I	CGTCTC	1 cut(s)	565
FaeI	CATG	6 cut(s)	480, 851, 1002, 1145, 1153, 1270
FaqI	GGGAC	1 cut(s)	1176
FatI	CATG	6 cut(s)	476, 847, 998, 1141, 1149, 1266
FblI	GTMKAC	2 cut(s)	782, 982
FokI	GGATG	5 cut(s)	60, 173, 265, 593, 1155
FriOI	GRGCYC	1 cut(s)	449
FspBI	CTAG	1 cut(s)	390
GsaI	CCCAGC	1 cut(s)	1261
GsuI	CTGGAG	2 cut(s)	795, 1227
HaeIII	GGCC	3 cut(s)	93, 1077, 1100
HapII	CCGG	1 cut(s)	764
Hin1II	CATG	6 cut(s)	480, 851, 1002, 1145, 1153, 1270
HinfI	GANTC	2 cut(s)	915, 1236
HpaII	CCGG	1 cut(s)	764
HphI	GGTGA	2 cut(s)	211, 449
Hpy166II	GTNNAC	2 cut(s)	783, 983
Hpy188I	TCNGA	8 cut(s)	48, 111, 399, 444, 505, 569, 691, 730
Hpy188III	TCNNGA	5 cut(s)	218, 543, 764, 812, 1240
Hpy8I	GTNNAC	2 cut(s)	783, 983
Hpy99I	CGWCG	1 cut(s)	1232
HpyCH4III	ACNGT	5 cut(s)	497, 755, 790, 1030, 1232
HpyCH4IV	ACGT	1 cut(s)	637
HpyF3I	CTNAG	8 cut(s)	97, 108, 443, 450, 777, 930, 963, 1158
HpySE526I	ACGT	1 cut(s)	637
Hsp92II	CATG	6 cut(s)	480, 851, 1002, 1145, 1153, 1270
Kpn2I	TCCGGA	1 cut(s)	763
Kzo9I	GATC	6 cut(s)	151, 304, 311, 439, 523, 829
LguI	GCTCTTC	1 cut(s)	66
LmnI	GCTCC	4 cut(s)	106, 766, 814, 1208
LweI	GCATC	9 cut(s)	39, 82, 358, 451, 496, 571, 682, 844, 1177
MaeI	CTAG	1 cut(s)	390
MaeII	ACGT	1 cut(s)	637
MaeIII	GTNAC	3 cut(s)	199, 454, 890
MalI	GATC	6 cut(s)	153, 306, 313, 441, 525, 831
MboI	GATC	6 cut(s)	151, 304, 311, 439, 523, 829
MboII	GAAGA	4 cut(s)	53, 206, 686, 743
MhlI	GDGCHC	3 cut(s)	449, 998, 1202
MluCI	AATT	3 cut(s)	250, 376, 945
MmeI	TCCRAC	1 cut(s)	841
MroI	TCCGGA	1 cut(s)	763
MroXI	GAANNNNTTC	2 cut(s)	210, 1030
MseI	TTAA	2 cut(s)	605, 1176
MslI	CAYNNNNRTG	1 cut(s)	846
MspA1I	CMGCKG	1 cut(s)	317
MspCI	CTTAAG	1 cut(s)	1175
MspI	CCGG	1 cut(s)	764
MspR9I	CCNGG	4 cut(s)	90, 144, 197, 1023
MvaI	CCWGG	4 cut(s)	90, 144, 197, 1023
NdeII	GATC	6 cut(s)	151, 304, 311, 439, 523, 829
NlaIII	CATG	6 cut(s)	480, 851, 1002, 1145, 1153, 1270
NlaIV	GGNNCC	3 cut(s)	667, 762, 1062
NmuCI	GTSAC	2 cut(s)	199, 890
NspI	RCATGY	1 cut(s)	480
PaeI	GCATGC	1 cut(s)	480
PciSI	GCTCTTC	1 cut(s)	66
PcsI	WCGNNNNNNNCGW	1 cut(s)	886
PdmI	GAANNNNTTC	2 cut(s)	210, 1030
PfeI	GAWTC	2 cut(s)	915, 1236
PsiI	TTATAA	2 cut(s)	263, 492
Psp6I	CCWGG	4 cut(s)	88, 142, 195, 1021
PspFI	CCCAGC	1 cut(s)	1257
PspGI	CCWGG	4 cut(s)	88, 142, 195, 1021
PspN4I	GGNNCC	3 cut(s)	667, 762, 1062
PspPI	GGNCC	1 cut(s)	1075
PstI	CTGCAG	1 cut(s)	888
PstNI	CAGNNNCTG	1 cut(s)	16
PvuII	CAGCTG	1 cut(s)	317
RsaI	GTAC	3 cut(s)	160, 235, 1271
RsaNI	GTAC	3 cut(s)	159, 234, 1270
RseI	CAYNNNNRTG	1 cut(s)	846
SapI	GCTCTTC	1 cut(s)	66
SaqAI	TTAA	2 cut(s)	605, 1176
Sau3AI	GATC	6 cut(s)	151, 304, 311, 439, 523, 829
Sau96I	GGNCC	1 cut(s)	1075
ScaI	AGTACT	2 cut(s)	160, 235
ScrFI	CCNGG	4 cut(s)	90, 144, 197, 1023
SduI	GDGCHC	3 cut(s)	449, 998, 1202
SfaNI	GCATC	9 cut(s)	39, 82, 358, 451, 496, 571, 682, 844, 1177
SfcI	CTRYAG	2 cut(s)	65, 884
SmiMI	CAYNNNNRTG	1 cut(s)	846
SmlI	CTYRAG	1 cut(s)	1175
SmoI	CTYRAG	1 cut(s)	1175
SphI	GCATGC	1 cut(s)	480
Sse9I	AATT	3 cut(s)	250, 376, 945
SsiI	CCGC	3 cut(s)	166, 1049, 1058
SspMI	CTAG	1 cut(s)	390
StyD4I	CCNGG	4 cut(s)	88, 142, 195, 1021
StyI	CCWWGG	1 cut(s)	853
TaaI	ACNGT	5 cut(s)	497, 755, 790, 1030, 1232
TaiI	ACGT	1 cut(s)	640
TaqI	TCGA	2 cut(s)	150, 828
TasI	AATT	3 cut(s)	250, 376, 945
TatI	WGTACW	3 cut(s)	158, 233, 1269
TauI	GCSGC	2 cut(s)	168, 1061
TfiI	GAWTC	2 cut(s)	915, 1236
Tru1I	TTAA	2 cut(s)	605, 1176
Tru9I	TTAA	2 cut(s)	605, 1176
TscAI	CASTG	3 cut(s)	175, 760, 1207
TseFI	GTSAC	2 cut(s)	199, 890
Tsp45I	GTSAC	2 cut(s)	199, 890
TspDTI	ATGAA	5 cut(s)	280, 668, 687, 836, 1119
TspRI	CASTG	3 cut(s)	175, 760, 1207
Vha464I	CTTAAG	1 cut(s)	1175
XagI	CCTNNNNNAGG	1 cut(s)	1178
XceI	RCATGY	1 cut(s)	480
XmiI	GTMKAC	2 cut(s)	782, 982
XmnI	GAANNNNTTC	2 cut(s)	210, 1030
XspI	CTAG	1 cut(s)	390
ZrmI	AGTACT	2 cut(s)	160, 235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.