Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004118

Physical Location & Seq

Genomic Coordinates Reverse (-)

84197910 .. 84202528

Gene Structure 4619 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00146260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGCAACAGCAGCAGCAGAGGCTTAAACAACAACAGCAGCAAGCCATGATGCAGCAGTCGCTTTACCAACACCCTGCTCTCTTAGCCCCGCCTCAGATAGAGCCTATCTTGAGTGGAAATCTGCCTCCTGGGTTTGATTCAAGTACATGCCGCAGTGTGTATGTTGGAAATATTCATCCCCAGGTTACTGAAACCCTTCTTCAAGAAGTTTTTGCCAGTACTGGCCCACTTGAGGGATGCAAGCTCATAAGGAAAGATAAGTCATCCTATGGATTTGTTGATTACTATGATCGCCGATCAGCTGCCCTTGCTATTGTTTCTCTCAACGGCAGGCATCTGTTTGGACAGCCAATTAAAGTTAATTGGGCCTATCAAAGTAGTCAGAGGGAGGATACTTCAGGTCATTTTAATATTTTTGTTGGTGATCTTAGCGCTGAGGTTACCGATGCTACATTGTTTGCATGCTTTTCTGTTTACCCCAGTTGTTCAGATGCAAGGGTTATGTGGGATCCAAAAAGTGGGCGCTCAAGGGGCTTTGGGTTTGTTTCATTCCGGAATCAGCAGGATGCCCAAAGTGCCATAAATGACTTAAATGGAAAGTGGCTTGCAAGTAGACAAATTCGGTGCAACTGGGCTACAAAAGGTGCTGCTTCAAATGATGATAAACAGAGTTCTGATTCTAAAAGTGTGGTAGAGCTGACAAATGGAACATCAGAAGATGGTCAGGAGAAGCCTAATGAAGATGCTCCAGAGAACAATCCTCAGTATACCACAGTTTATGTTGGCAATCTGGCTCATGAGGTTACTCAAGCTGAACTCCATCGTCATTTCCATGCCCTCGGTGCGGGAACTATTGAAGATGTTAGGGTGCAACGAGATAAAGGTTTTGGGTTTGTGAGATACAGTACACATTCTGAAGCAGCCGCAGCTATCCAGATGGGGAATGCTAGGTTTCTCTGTGGAAAACCAATAAAGTGTTCATGGGGTAGCAAGCCTACTCCACCAGGAACCACCTCCAGCCCTCTCGCTCCACCAGCTGCAGCTTATATGCCAGGTTTTTCAGCCACTGACCTTGCGGCATATGAACGACAAATGGCATATGGTAAAATGGGTGGTCCACAAGCCCTCATGCTTCCCCAGGGTCAGCATGGTATGAAGGCACCCATGGGAATGGGTGCTGGAACTAGTCAGGCGATATATGACGGAGGCTACCAGAATGTAGCAACATCCCAGCAGCTCATGTACTACCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005764 GO:0005773 GO:0006355 GO:0006357 GO:0006915 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0008150 GO:0008219 GO:0008543 GO:0009719 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010494 GO:0010556 GO:0012501 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0035770 GO:0036464 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044344 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070848 GO:0070887 GO:0071310 GO:0071363 GO:0071495 GO:0071774 GO:0080090 GO:1903506 GO:1990904 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

417

Amino Acids

45.61

Weight (kDa)

7.13

Isoelectric Point (pI)

47.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	53 - 119	6.2e-13	RNA recognition motif
RRM_1	PF00076	138 - 208	8.4e-17	RNA recognition motif
RRM_1	PF00076	259 - 325	1.9e-13	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004118)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17370 AT1G17370 AT1G54080 AT3G14100
fragaria_vesca	FvH4_1g09080 FvH4_6g35150
malus_domestica	MD02G1096200.v1.1 MD09G1178500.v1.1 MD17G1148300.v1.1
prunus_persica	Prupe.3G037700_v2.0.a1 Prupe.3G037700_v2.0.a1 Prupe.7G194700_v2.0.a1 Prupe.7G194700_v2.0.a1
pyrus_communis	pycom02g07600 pycom15g19550 pycom17g14160
rosa_chinensis	RchiOBHm_Chr2g0095491 RchiOBHm_Chr2g0146411
rosa_laevigata	RLG00000016572 RLG00000020198
rosa_multiflora	Rmu_sc0006076.1_g000007
rosa_roxburghii	Rroxscaffold_2G00100120 Rroxscaffold_2G00146260
rosa_rugosa	Rorug02G0051600 Rorug02G0394100 Rorug02G0394200
rosa_samantha	Rh2AG450900 Rh2BG100900 Rh2BG463300 Rh2CG437700 Rh2DG472300
rosa_wichuraiana	Rw2G007550 Rw2G036800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1159
AccB7I	CCANNNNNTGG	1 cut(s)	518
AccI	GTMKAC	2 cut(s)	613, 767
AccIII	TCCGGA	1 cut(s)	552
AciI	CCGC	5 cut(s)	89, 151, 845, 924, 1076
AclWI	GGATC	2 cut(s)	503, 516
AcsI	RAATTY	1 cut(s)	618
AcuI	CTGAAG	2 cut(s)	381, 936
AfaI	GTAC	4 cut(s)	145, 220, 907, 1244
AfeI	AGCGCT	1 cut(s)	433
AfiI	CCNNNNNNNGG	4 cut(s)	232, 233, 518, 844
AgsI	TTSAA	4 cut(s)	141, 203, 654, 857
AhlI	ACTAGT	1 cut(s)	1184
AjnI	CCWGG	5 cut(s)	127, 180, 1003, 1051, 1137
AjuI	GAANNNNNNNTTGG	2 cut(s)	961, 993
AluBI	AGCT	8 cut(s)	244, 302, 697, 812, 929, 1037, 1043, 1237
AluI	AGCT	8 cut(s)	244, 302, 697, 812, 929, 1037, 1043, 1237
AlwI	GGATC	2 cut(s)	503, 516
AlwNI	CAGNNNCTG	1 cut(s)	1067
Aor13HI	TCCGGA	1 cut(s)	552
Aor51HI	AGCGCT	1 cut(s)	433
AoxI	GGCC	2 cut(s)	223, 366
ApoI	RAATTY	1 cut(s)	618
Asp700I	GAANNNNTTC	1 cut(s)	195
AspLEI	GCGC	2 cut(s)	434, 525
AspS9I	GGNCC	3 cut(s)	224, 366, 1115
AsuHPI	GGTGA	1 cut(s)	434
AvaII	GGWCC	1 cut(s)	1115
BamHI	GGATCC	1 cut(s)	508
BanI	GGYRCC	1 cut(s)	1159
BbvCI	CCTCAGC	1 cut(s)	435
BccI	CCATC	3 cut(s)	713, 828, 931
BceAI	ACGGC	1 cut(s)	343
BciT130I	CCWGG	5 cut(s)	129, 182, 1005, 1053, 1139
BciVI	GTATCC	1 cut(s)	385
BcuI	ACTAGT	1 cut(s)	1184
BfaI	CTAG	2 cut(s)	948, 1185
BfmI	CTRYAG	1 cut(s)	1038
BfoI	RGCGCY	2 cut(s)	435, 526
BfuI	GTATCC	1 cut(s)	385
BmcAI	AGTACT	1 cut(s)	220
Bme1390I	CCNGG	5 cut(s)	129, 182, 1005, 1053, 1139
Bme18I	GGWCC	1 cut(s)	1115
BmgT120I	GGNCC	3 cut(s)	224, 366, 1115
BmiI	GGNNCC	3 cut(s)	510, 1009, 1161
BmrFI	CCNGG	5 cut(s)	129, 182, 1005, 1053, 1139
BmrI	ACTGGG	2 cut(s)	474, 640
BmsI	GCATC	7 cut(s)	39, 227, 343, 436, 481, 556, 733
BmuI	ACTGGG	2 cut(s)	474, 640
BpmI	CTGGAG	2 cut(s)	732, 1000
Bpu10I	CCTNAGC	1 cut(s)	435
BpuEI	CTTGAG	4 cut(s)	130, 251, 511, 792
BsaJI	CCNNGG	6 cut(s)	128, 180, 838, 1137, 1138, 1164
BsaWI	WCCGGW	1 cut(s)	552
Bsc4I	CCNNNNNNNGG	4 cut(s)	232, 233, 518, 844
Bse1I	ACTGG	5 cut(s)	216, 226, 480, 635, 1249
BseAI	TCCGGA	1 cut(s)	552
BseBI	CCWGG	5 cut(s)	129, 182, 1005, 1053, 1139
BseDI	CCNNGG	6 cut(s)	128, 180, 838, 1137, 1138, 1164
BseGI	GGATG	5 cut(s)	175, 242, 263, 571, 1226
BseLI	CCNNNNNNNGG	4 cut(s)	232, 233, 518, 844
BseMII	CTCAG	3 cut(s)	107, 426, 776
BseNI	ACTGG	5 cut(s)	216, 226, 480, 635, 1249
BseYI	CCCAGC	1 cut(s)	1230
BshFI	GGCC	2 cut(s)	225, 368
BshNI	GGYRCC	1 cut(s)	1159
BsiSI	CCGG	1 cut(s)	553
BslI	CCNNNNNNNGG	4 cut(s)	232, 233, 518, 844
BsmI	GAATGC	1 cut(s)	949
BsnI	GGCC	2 cut(s)	225, 368
Bsp13I	TCCGGA	1 cut(s)	552
Bsp143I	GATC	4 cut(s)	289, 296, 424, 508
Bsp19I	CCATGG	1 cut(s)	1164
BspACI	CCGC	5 cut(s)	89, 151, 845, 924, 1076
BspANI	GGCC	2 cut(s)	225, 368
BspCNI	CTCAG	3 cut(s)	106, 427, 775
BspEI	TCCGGA	1 cut(s)	552
BspHI	TCATGA	1 cut(s)	796
BspLI	GGNNCC	3 cut(s)	510, 1009, 1161
BspMAI	CTGCAG	1 cut(s)	1042
BspPI	GGATC	2 cut(s)	503, 516
BspT107I	GGYRCC	1 cut(s)	1159
BsrI	ACTGG	5 cut(s)	216, 226, 480, 635, 1249
BssECI	CCNNGG	6 cut(s)	128, 180, 838, 1137, 1138, 1164
BssMI	GATC	4 cut(s)	289, 296, 424, 508
BssNAI	GTATAC	1 cut(s)	768
BssT1I	CCWWGG	1 cut(s)	1164
Bst1107I	GTATAC	1 cut(s)	768
Bst2UI	CCWGG	5 cut(s)	129, 182, 1005, 1053, 1139
Bst4CI	ACNGT	2 cut(s)	775, 905
BstC8I	GCNNGC	6 cut(s)	42, 242, 332, 463, 606, 992
BstDEI	CTNAG	5 cut(s)	82, 93, 428, 435, 762
BstDSI	CCRYGG	1 cut(s)	1164
BstEII	GGTNACC	1 cut(s)	439
BstF5I	GGATG	5 cut(s)	175, 242, 263, 571, 1226
BstH2I	RGCGCY	2 cut(s)	435, 526
BstHHI	GCGC	2 cut(s)	434, 525
BstKTI	GATC	4 cut(s)	292, 299, 427, 511
BstMBI	GATC	4 cut(s)	289, 296, 424, 508
BstNI	CCWGG	5 cut(s)	129, 182, 1005, 1053, 1139
BstNSI	RCATGY	2 cut(s)	150, 465
BstPI	GGTNACC	1 cut(s)	439
BstSCI	CCNGG	5 cut(s)	127, 180, 1003, 1051, 1137
BstSFI	CTRYAG	1 cut(s)	1038
BstX2I	RGATCY	1 cut(s)	508
BstXI	CCANNNNNNTGG	1 cut(s)	1171
BstYI	RGATCY	1 cut(s)	508
BstZ17I	GTATAC	1 cut(s)	768
BsuI	GTATCC	1 cut(s)	385
BsuRI	GGCC	2 cut(s)	225, 368
BtgI	CCRYGG	1 cut(s)	1164
BtsCI	GGATG	5 cut(s)	175, 242, 263, 571, 1226
BtsI	GCAGTG	1 cut(s)	160
BtsIMutI	CAGTG	2 cut(s)	160, 1065
Cac8I	GCNNGC	6 cut(s)	42, 242, 332, 463, 606, 992
CaiI	CAGNNNCTG	1 cut(s)	1067
CciI	TCATGA	1 cut(s)	796
CfoI	GCGC	2 cut(s)	434, 525
Cfr13I	GGNCC	3 cut(s)	224, 366, 1115
Csp6I	GTAC	4 cut(s)	144, 219, 906, 1243
CspCI	CAANNNNNGTGG	2 cut(s)	1054, 1089
CviQI	GTAC	4 cut(s)	144, 219, 906, 1243
DdeI	CTNAG	5 cut(s)	82, 93, 428, 435, 762
DpnI	GATC	4 cut(s)	291, 298, 426, 510
DpnII	GATC	4 cut(s)	289, 296, 424, 508
Eco130I	CCWWGG	1 cut(s)	1164
Eco47I	GGWCC	1 cut(s)	1115
Eco47III	AGCGCT	1 cut(s)	433
Eco57I	CTGAAG	2 cut(s)	381, 936
Eco91I	GGTNACC	1 cut(s)	439
EcoO65I	GGTNACC	1 cut(s)	439
EcoRII	CCWGG	5 cut(s)	127, 180, 1003, 1051, 1137
EcoT14I	CCWWGG	1 cut(s)	1164
ErhI	CCWWGG	1 cut(s)	1164
FauI	CCCGC	2 cut(s)	96, 838
FauNDI	CATATG	2 cut(s)	1081, 1099
FblI	GTMKAC	2 cut(s)	613, 767
FokI	GGATG	5 cut(s)	162, 249, 250, 578, 1213
FspBI	CTAG	2 cut(s)	948, 1185
GlaI	GCGC	2 cut(s)	433, 524
GsaI	CCCAGC	1 cut(s)	1234
GsuI	CTGGAG	2 cut(s)	732, 1000
HaeII	RGCGCY	2 cut(s)	435, 526
HaeIII	GGCC	2 cut(s)	225, 368
HapII	CCGG	1 cut(s)	553
HhaI	GCGC	2 cut(s)	434, 525
Hin6I	GCGC	2 cut(s)	432, 523
HinP1I	GCGC	2 cut(s)	432, 523
HinfI	GANTC	3 cut(s)	137, 556, 677
HpaII	CCGG	1 cut(s)	553
HphI	GGTGA	1 cut(s)	434
Hpy166II	GTNNAC	5 cut(s)	475, 614, 768, 908, 1118
Hpy188I	TCNGA	6 cut(s)	96, 384, 490, 676, 715, 916
Hpy188III	TCNNGA	7 cut(s)	109, 203, 553, 725, 749, 797, 934
Hpy8I	GTNNAC	5 cut(s)	475, 614, 768, 908, 1118
HpyAV	CCTTC	2 cut(s)	206, 1150
HpyCH4III	ACNGT	2 cut(s)	775, 905
HpyCH4V	TGCA	9 cut(s)	4, 52, 240, 461, 494, 608, 627, 871, 1040
HpyF3I	CTNAG	5 cut(s)	82, 93, 428, 435, 762
HspAI	GCGC	2 cut(s)	432, 523
Kpn2I	TCCGGA	1 cut(s)	552
Kzo9I	GATC	4 cut(s)	289, 296, 424, 508
LmnI	GCTCC	2 cut(s)	751, 1033
LweI	GCATC	7 cut(s)	39, 227, 343, 436, 481, 556, 733
MaeI	CTAG	2 cut(s)	948, 1185
MaeIII	GTNAC	3 cut(s)	184, 439, 802
MalI	GATC	4 cut(s)	291, 298, 426, 510
MboI	GATC	4 cut(s)	289, 296, 424, 508
MboII	GAAGA	4 cut(s)	191, 728, 752, 869
MflI	RGATCY	1 cut(s)	508
MluCI	AATT	3 cut(s)	351, 361, 618
MmeI	TCCRAC	1 cut(s)	145
MroI	TCCGGA	1 cut(s)	552
MroXI	GAANNNNTTC	1 cut(s)	195
MseI	TTAA	5 cut(s)	24, 354, 360, 408, 590
MslI	CAYNNNNRTG	2 cut(s)	831, 1169
MspA1I	CMGCKG	2 cut(s)	302, 1037
MspI	CCGG	1 cut(s)	553
MspR9I	CCNGG	5 cut(s)	129, 182, 1005, 1053, 1139
Mva1269I	GAATGC	1 cut(s)	949
MvaI	CCWGG	5 cut(s)	129, 182, 1005, 1053, 1139
NcoI	CCATGG	1 cut(s)	1164
NdeI	CATATG	2 cut(s)	1081, 1099
NdeII	GATC	4 cut(s)	289, 296, 424, 508
NlaIV	GGNNCC	3 cut(s)	510, 1009, 1161
NspI	RCATGY	2 cut(s)	150, 465
PaeI	GCATGC	1 cut(s)	465
PagI	TCATGA	1 cut(s)	796
PasI	CCCWGGG	1 cut(s)	1138
PctI	GAATGC	1 cut(s)	949
PdmI	GAANNNNTTC	1 cut(s)	195
PfeI	GAWTC	3 cut(s)	137, 556, 677
PflMI	CCANNNNNTGG	1 cut(s)	518
Psp6I	CCWGG	5 cut(s)	127, 180, 1003, 1051, 1137
PspEI	GGTNACC	1 cut(s)	439
PspFI	CCCAGC	1 cut(s)	1230
PspGI	CCWGG	5 cut(s)	127, 180, 1003, 1051, 1137
PspN4I	GGNNCC	3 cut(s)	510, 1009, 1161
PspPI	GGNCC	3 cut(s)	224, 366, 1115
PstI	CTGCAG	1 cut(s)	1042
PstNI	CAGNNNCTG	1 cut(s)	1067
PsuI	RGATCY	1 cut(s)	508
PvuII	CAGCTG	2 cut(s)	302, 1037
RsaI	GTAC	4 cut(s)	145, 220, 907, 1244
RsaNI	GTAC	4 cut(s)	144, 219, 906, 1243
RseI	CAYNNNNRTG	2 cut(s)	831, 1169
SaqAI	TTAA	5 cut(s)	24, 354, 360, 408, 590
Sau3AI	GATC	4 cut(s)	289, 296, 424, 508
Sau96I	GGNCC	3 cut(s)	224, 366, 1115
ScaI	AGTACT	1 cut(s)	220
ScrFI	CCNGG	5 cut(s)	129, 182, 1005, 1053, 1139
SfaNI	GCATC	7 cut(s)	39, 227, 343, 436, 481, 556, 733
SfcI	CTRYAG	1 cut(s)	1038
SinI	GGWCC	1 cut(s)	1115
SmiMI	CAYNNNNRTG	2 cut(s)	831, 1169
SmlI	CTYRAG	4 cut(s)	109, 230, 526, 807
SmoI	CTYRAG	4 cut(s)	109, 230, 526, 807
SpeI	ACTAGT	1 cut(s)	1184
SphI	GCATGC	1 cut(s)	465
Sse9I	AATT	3 cut(s)	351, 361, 618
SsiI	CCGC	5 cut(s)	89, 151, 845, 924, 1076
SspI	AATATT	2 cut(s)	172, 412
SspMI	CTAG	2 cut(s)	948, 1185
StyD4I	CCNGG	5 cut(s)	127, 180, 1003, 1051, 1137
StyI	CCWWGG	1 cut(s)	1164
TaaI	ACNGT	2 cut(s)	775, 905
TasI	AATT	3 cut(s)	351, 361, 618
TatI	WGTACW	4 cut(s)	143, 218, 905, 1242
TauI	GCSGC	3 cut(s)	153, 926, 1079
TfiI	GAWTC	3 cut(s)	137, 556, 677
Tru1I	TTAA	5 cut(s)	24, 354, 360, 408, 590
Tru9I	TTAA	5 cut(s)	24, 354, 360, 408, 590
TscAI	CASTG	2 cut(s)	160, 1072
TspDTI	ATGAA	6 cut(s)	164, 537, 753, 969, 1098, 1169
TspGWI	ACGGA	1 cut(s)	1218
TspRI	CASTG	2 cut(s)	160, 1072
Van91I	CCANNNNNTGG	1 cut(s)	518
VpaK11BI	GGWCC	1 cut(s)	1115
XapI	RAATTY	1 cut(s)	618
XceI	RCATGY	2 cut(s)	150, 465
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1145
XmiI	GTMKAC	2 cut(s)	613, 767
XmnI	GAANNNNTTC	1 cut(s)	195
XspI	CTAG	2 cut(s)	948, 1185
ZrmI	AGTACT	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.