Rh2BG463300

Oligouridylate-binding protein 1B-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Forward (+)
65503025 .. 65508245
5221 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG463300.1

Sequence Viewer

Length: 1275 bp
ATGCAGCACCAGAGGCTGAAGCAGCAGCAGCAGCAAGCTCTGATGCAACAGGCTCTTCTTCAGCAGCATTCTCTCTACCACCCCGGCCTCTTGGCTCCGCCTCAGATAGAGCCAATCCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTTGGGAATATCCATACCCAGGTGACAGAACCACTTCTTCAAGAGGTTTTTGCAAGTACAGGTGCTGTTGAAAGCTGTAAACTTATAAGAAAGGAAAAGTCATCCTATGGGTTTGTCCACTATTTTGATCGCAGATCAGCCGCTCTTGCAATATTGTCTCTCAATGGAAGACAGCTGTTTGGACAGCCTATCAAGGTGAATTGGGCATATGCCAGTGGTCAGAGGGAAGATACATCAGGTCACTTCAACATTTTTGTAGGTGATCTCAGCCCTGAGGTTACTGATGCTACATTATTTGCATGCTTTTCCGTTTATTCCAGTTGTTCAGATGCAAGAGTTATGTGGGATCAGAAGACAGGGCGCTCTAGAGGCTTTGGGTTTGTCTCATTCCGGAGCCAACAGGATGCTCAAAGTGCTATAAATGACTTAAATGGTAAGTGGCTTGCCAGTAGACAGATACGTTGCAACTGGGCAACAAAAGGTGCTGGCACCAATGAGGATAAGCAGAGTTCAGATGCCAAGAGTGTGGTGGAACTAACAAATGGTTCCTCAGAAGACGGAAAAGAGGCAACTAACAATGAGGCTCCGGAGAACAACCCCCAATATACCACTGTCTACGTTGGCAATCTTGCTCCAGAGGTCACTCAGCTTGATCTTCATCGTCACTTTCACACTCTTGGTGTTGGAGTAATTGAAGAAGTTCGGCTTCAGCGTGATAAGGGTTTTGGGTTTGTCAGGTTCAATACCCATGCTGAGGCAGCTCTGGCTATACAGATGGGAAATTCTCAGTCGAATTTGTGTGGAAGACAAATAAAGTGCTCTTGGGGCAGCAAGCCTACTCCACCAGGAACAGTCTCAAACCCACTCCCTCCTCCTGCTGCAGCAGTGCCTATCCCGGGCCTCTCTGCAAGCGACCTCCTGACCTATGAGCGGCAACTAGCAATGAGCAAGATGGGCGGTGTCCATGCCCTTATGCACCCCCAGGGACAGATCCCTCTTAAGCAGGGGGCAATGGGAATGGGCACTGCTGGAGCAAGCCAGGCTATATATGATGGTGGATTCCAGAATGTTGCTGCTGCCCAGCAGCTCATGTACTACCAGTAA

Protein Analysis

424

Amino Acids

46.19

Weight (kDa)

7.66

Isoelectric Point (pI)

49.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 56 - 122 4.1e-13 RNA recognition motif
RRM_1 PF00076 141 - 211 3.3e-18 RNA recognition motif
RRM_1 PF00076 262 - 328 2e-12 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 257
AccB1I GGYRCC 1 cut(s) 659
AccBSI CCGCTC 2 cut(s) 314, 1102
AccI GTMKAC 2 cut(s) 622, 786
AccIII TCCGGA 2 cut(s) 561, 757
AciI CCGC 5 cut(s) 98, 160, 312, 1102, 1128
AclWI GGATC 3 cut(s) 140, 525, 1156
AcsI RAATTY 2 cut(s) 952, 964
AcuI CTGAAG 3 cut(s) 38, 44, 863
AfaI GTAC 3 cut(s) 154, 229, 1265
AfiI CCNNNNNNNGG 4 cut(s) 190, 925, 1067, 1101
AflII CTTAAG 1 cut(s) 1169
AgsI TTSAA 5 cut(s) 212, 242, 418, 866, 913
AjnI CCWGG 5 cut(s) 136, 189, 1015, 1152, 1209
AluBI AGCT 6 cut(s) 38, 246, 346, 820, 932, 1258
AluI AGCT 6 cut(s) 38, 246, 346, 820, 932, 1258
Alw21I GWGCWC 1 cut(s) 992
Alw26I GTCTC 3 cut(s) 333, 559, 1030
AlwI GGATC 3 cut(s) 140, 525, 1156
AlwNI CAGNNNCTG 2 cut(s) 16, 236
Ama87I CYCGRG 1 cut(s) 1066
Aor13HI TCCGGA 2 cut(s) 561, 757
AoxI GGCC 2 cut(s) 85, 1069
ApoI RAATTY 2 cut(s) 952, 964
Asp700I GAANNNNTTC 2 cut(s) 204, 870
AspLEI GCGC 1 cut(s) 534
AspS9I GGNCC 1 cut(s) 1069
AsuC2I CCSGG 3 cut(s) 84, 1067, 1068
AsuHPI GGTGA 3 cut(s) 205, 379, 443
AvaI CYCGRG 1 cut(s) 1066
AxyI CCTNAGG 1 cut(s) 444
BaeGI GKGCMC 1 cut(s) 1196
BanI GGYRCC 1 cut(s) 659
BbsI GAAGAC 4 cut(s) 346, 530, 732, 982
Bbv12I GWGCWC 1 cut(s) 992
BbvCI CCTCAGC 1 cut(s) 924
BccI CCATC 3 cut(s) 940, 1117, 1217
BciT130I CCWGG 5 cut(s) 138, 191, 1017, 1154, 1211
BcnI CCSGG 3 cut(s) 84, 1067, 1068
BcoDI GTCTC 3 cut(s) 333, 559, 1030
BfaI CTAG 2 cut(s) 537, 1109
BfmI CTRYAG 1 cut(s) 1050
BfoI RGCGCY 1 cut(s) 535
BfrI CTTAAG 1 cut(s) 1169
BmcAI AGTACT 1 cut(s) 154
Bme1390I CCNGG 8 cut(s) 84, 138, 191, 1017, 1067, 1068, 1154, 1211
BmeT110I CYCGRG 1 cut(s) 1066
BmgT120I GGNCC 1 cut(s) 1069
BmiI GGNNCC 5 cut(s) 96, 566, 661, 718, 756
BmrFI CCNGG 8 cut(s) 84, 138, 191, 1017, 1067, 1068, 1154, 1211
BmrI ACTGGG 1 cut(s) 649
BmsI GCATC 5 cut(s) 33, 445, 490, 565, 676
BmuI ACTGGG 1 cut(s) 649
BpiI GAAGAC 4 cut(s) 346, 530, 732, 982
BpmI CTGGAG 2 cut(s) 789, 1221
Bpu10I CCTNAGC 1 cut(s) 924
BpuMI CCSGG 3 cut(s) 84, 1067, 1068
BsaBI GATNNNNATC 1 cut(s) 828
BsaJI CCNNGG 5 cut(s) 82, 189, 1066, 1152, 1153
BsaWI WCCGGW 2 cut(s) 561, 757
Bsc4I CCNNNNNNNGG 4 cut(s) 190, 925, 1067, 1101
Bse1I ACTGG 5 cut(s) 384, 489, 618, 644, 1270
Bse21I CCTNAGG 1 cut(s) 444
Bse3DI GCAATG 2 cut(s) 1119, 1188
Bse8I GATNNNNATC 1 cut(s) 828
BseAI TCCGGA 2 cut(s) 561, 757
BseBI CCWGG 5 cut(s) 138, 191, 1017, 1154, 1211
BseDI CCNNGG 5 cut(s) 82, 189, 1066, 1152, 1153
BseGI GGATG 2 cut(s) 272, 580
BseJI GATNNNNATC 1 cut(s) 828
BseLI CCNNNNNNNGG 4 cut(s) 190, 925, 1067, 1101
BseMI GCAATG 2 cut(s) 1119, 1188
BseMII CTCAG 7 cut(s) 116, 435, 451, 735, 830, 915, 971
BseNI ACTGG 5 cut(s) 384, 489, 618, 644, 1270
BseRI GAGGAG 1 cut(s) 1032
BseSI GKGCMC 1 cut(s) 1196
BseYI CCCAGC 1 cut(s) 1251
BshFI GGCC 2 cut(s) 87, 1071
BshNI GGYRCC 1 cut(s) 659
BsiHKAI GWGCWC 1 cut(s) 992
BsiHKCI CYCGRG 1 cut(s) 1066
BsiSI CCGG 4 cut(s) 84, 562, 758, 1067
BslFI GGGAC 1 cut(s) 1170
BslI CCNNNNNNNGG 4 cut(s) 190, 925, 1067, 1101
BsmAI GTCTC 3 cut(s) 333, 559, 1030
BsmFI GGGAC 1 cut(s) 1170
BsmI GAATGC 1 cut(s) 67
BsnI GGCC 2 cut(s) 87, 1071
BsoBI CYCGRG 1 cut(s) 1066
Bsp1286I GDGCHC 2 cut(s) 992, 1196
Bsp13I TCCGGA 2 cut(s) 561, 757
Bsp143I GATC 7 cut(s) 145, 298, 305, 433, 517, 823, 1161
BspACI CCGC 5 cut(s) 98, 160, 312, 1102, 1128
BspANI GGCC 2 cut(s) 87, 1071
BspCNI CTCAG 7 cut(s) 115, 436, 450, 734, 829, 916, 970
BspEI TCCGGA 2 cut(s) 561, 757
BspLI GGNNCC 5 cut(s) 96, 566, 661, 718, 756
BspMAI CTGCAG 1 cut(s) 1054
BspPI GGATC 3 cut(s) 140, 525, 1156
BspQI GCTCTTC 1 cut(s) 60
BspT107I GGYRCC 1 cut(s) 659
BspTI CTTAAG 1 cut(s) 1169
BsrBI CCGCTC 2 cut(s) 314, 1102
BsrDI GCAATG 2 cut(s) 1119, 1188
BsrI ACTGG 5 cut(s) 384, 489, 618, 644, 1270
BssECI CCNNGG 5 cut(s) 82, 189, 1066, 1152, 1153
BssMI GATC 7 cut(s) 145, 298, 305, 433, 517, 823, 1161
Bst2UI CCWGG 5 cut(s) 138, 191, 1017, 1154, 1211
Bst4CI ACNGT 2 cut(s) 784, 1024
Bst6I CTCTTC 1 cut(s) 60
BstAFI CTTAAG 1 cut(s) 1169
BstC8I GCNNGC 7 cut(s) 36, 472, 615, 658, 1004, 1081, 1207
BstDEI CTNAG 7 cut(s) 102, 437, 444, 721, 816, 924, 957
BstF5I GGATG 2 cut(s) 272, 580
BstH2I RGCGCY 1 cut(s) 535
BstHHI GCGC 1 cut(s) 534
BstKTI GATC 7 cut(s) 148, 301, 308, 436, 520, 826, 1164
BstMAI GTCTC 3 cut(s) 333, 559, 1030
BstMBI GATC 7 cut(s) 145, 298, 305, 433, 517, 823, 1161
BstNI CCWGG 5 cut(s) 138, 191, 1017, 1154, 1211
BstNSI RCATGY 1 cut(s) 474
BstSCI CCNGG 8 cut(s) 82, 136, 189, 1015, 1065, 1066, 1152, 1209
BstSFI CTRYAG 1 cut(s) 1050
BstSLI GKGCMC 1 cut(s) 1196
BstV2I GAAGAC 4 cut(s) 346, 530, 732, 982
BstX2I RGATCY 1 cut(s) 1161
BstXI CCANNNNNNTGG 1 cut(s) 697
BstYI RGATCY 1 cut(s) 1161
Bsu36I CCTNAGG 1 cut(s) 444
BsuRI GGCC 2 cut(s) 87, 1071
BtsCI GGATG 2 cut(s) 272, 580
BtsI GCAGTG 3 cut(s) 169, 1062, 1194
BtsIMutI CAGTG 5 cut(s) 169, 391, 780, 1062, 1194
Cac8I GCNNGC 7 cut(s) 36, 472, 615, 658, 1004, 1081, 1207
CaiI CAGNNNCTG 2 cut(s) 16, 236
CfoI GCGC 1 cut(s) 534
Cfr13I GGNCC 1 cut(s) 1069
Cfr9I CCCGGG 1 cut(s) 1066
Csp6I GTAC 3 cut(s) 153, 228, 1264
CviAII CATG 4 cut(s) 471, 920, 1136, 1261
CviQI GTAC 3 cut(s) 153, 228, 1264
DdeI CTNAG 7 cut(s) 102, 437, 444, 721, 816, 924, 957
DpnI GATC 7 cut(s) 147, 300, 307, 435, 519, 825, 1163
DpnII GATC 7 cut(s) 145, 298, 305, 433, 517, 823, 1161
Eam1104I CTCTTC 1 cut(s) 60
EarI CTCTTC 1 cut(s) 60
EciI GGCGGA 1 cut(s) 87
Eco57I CTGAAG 3 cut(s) 38, 44, 863
Eco81I CCTNAGG 1 cut(s) 444
Eco88I CYCGRG 1 cut(s) 1066
EcoRII CCWGG 5 cut(s) 136, 189, 1015, 1152, 1209
FaeI CATG 4 cut(s) 474, 923, 1139, 1264
FalI AAGNNNNNCTT 2 cut(s) 861, 893
FaqI GGGAC 1 cut(s) 1170
FatI CATG 4 cut(s) 470, 919, 1135, 1260
FauNDI CATATG 1 cut(s) 379
FblI GTMKAC 2 cut(s) 622, 786
FokI GGATG 2 cut(s) 259, 587
FspBI CTAG 2 cut(s) 537, 1109
GlaI GCGC 1 cut(s) 533
GsaI CCCAGC 1 cut(s) 1255
GsuI CTGGAG 2 cut(s) 789, 1221
HaeII RGCGCY 1 cut(s) 535
HaeIII GGCC 2 cut(s) 87, 1071
HapII CCGG 4 cut(s) 84, 562, 758, 1067
HhaI GCGC 1 cut(s) 534
Hin1II CATG 4 cut(s) 474, 923, 1139, 1264
Hin6I GCGC 1 cut(s) 532
HinP1I GCGC 1 cut(s) 532
HinfI GANTC 1 cut(s) 1230
HpaII CCGG 4 cut(s) 84, 562, 758, 1067
HphI GGTGA 3 cut(s) 205, 379, 443
Hpy166II GTNNAC 4 cut(s) 251, 289, 623, 787
Hpy188I TCNGA 7 cut(s) 42, 105, 393, 499, 522, 685, 724
Hpy188III TCNNGA 7 cut(s) 212, 537, 562, 758, 806, 1090, 1234
Hpy8I GTNNAC 4 cut(s) 251, 289, 623, 787
HpyCH4III ACNGT 2 cut(s) 784, 1024
HpyCH4IV ACGT 2 cut(s) 631, 789
HpyF3I CTNAG 7 cut(s) 102, 437, 444, 721, 816, 924, 957
HpySE526I ACGT 2 cut(s) 631, 789
Hsp92II CATG 4 cut(s) 474, 923, 1139, 1264
HspAI GCGC 1 cut(s) 532
Kpn2I TCCGGA 2 cut(s) 561, 757
Kzo9I GATC 7 cut(s) 145, 298, 305, 433, 517, 823, 1161
LguI GCTCTTC 1 cut(s) 60
LmnI GCTCC 5 cut(s) 100, 564, 760, 808, 1202
LweI GCATC 5 cut(s) 33, 445, 490, 565, 676
MaeI CTAG 2 cut(s) 537, 1109
MaeII ACGT 2 cut(s) 631, 789
MaeIII GTNAC 5 cut(s) 193, 410, 448, 811, 833
MalI GATC 7 cut(s) 147, 300, 307, 435, 519, 825, 1163
MbiI CCGCTC 2 cut(s) 314, 1102
MboI GATC 7 cut(s) 145, 298, 305, 433, 517, 823, 1161
MflI RGATCY 1 cut(s) 1161
MhlI GDGCHC 2 cut(s) 992, 1196
MluCI AATT 4 cut(s) 370, 861, 952, 964
MmeI TCCRAC 1 cut(s) 835
MroI TCCGGA 2 cut(s) 561, 757
MroXI GAANNNNTTC 2 cut(s) 204, 870
MseI TTAA 2 cut(s) 599, 1170
MspA1I CMGCKG 1 cut(s) 346
MspCI CTTAAG 1 cut(s) 1169
MspI CCGG 4 cut(s) 84, 562, 758, 1067
MspR9I CCNGG 8 cut(s) 84, 138, 191, 1017, 1067, 1068, 1154, 1211
Mva1269I GAATGC 1 cut(s) 67
MvaI CCWGG 5 cut(s) 138, 191, 1017, 1154, 1211
NciI CCSGG 3 cut(s) 84, 1067, 1068
NdeI CATATG 1 cut(s) 379
NdeII GATC 7 cut(s) 145, 298, 305, 433, 517, 823, 1161
NlaIII CATG 4 cut(s) 474, 923, 1139, 1264
NlaIV GGNNCC 5 cut(s) 96, 566, 661, 718, 756
NmuCI GTSAC 4 cut(s) 193, 410, 811, 833
NspI RCATGY 1 cut(s) 474
PaeI GCATGC 1 cut(s) 474
PasI CCCWGGG 1 cut(s) 1153
PciSI GCTCTTC 1 cut(s) 60
PcsI WCGNNNNNNNCGW 1 cut(s) 880
PctI GAATGC 1 cut(s) 67
PdmI GAANNNNTTC 2 cut(s) 204, 870
PfeI GAWTC 1 cut(s) 1230
PsiI TTATAA 1 cut(s) 257
Psp6I CCWGG 5 cut(s) 136, 189, 1015, 1152, 1209
PspFI CCCAGC 1 cut(s) 1251
PspGI CCWGG 5 cut(s) 136, 189, 1015, 1152, 1209
PspN4I GGNNCC 5 cut(s) 96, 566, 661, 718, 756
PspPI GGNCC 1 cut(s) 1069
PstI CTGCAG 1 cut(s) 1054
PstNI CAGNNNCTG 2 cut(s) 16, 236
PsuI RGATCY 1 cut(s) 1161
PvuII CAGCTG 1 cut(s) 346
RsaI GTAC 3 cut(s) 154, 229, 1265
RsaNI GTAC 3 cut(s) 153, 228, 1264
SapI GCTCTTC 1 cut(s) 60
SaqAI TTAA 2 cut(s) 599, 1170
Sau3AI GATC 7 cut(s) 145, 298, 305, 433, 517, 823, 1161
Sau96I GGNCC 1 cut(s) 1069
ScaI AGTACT 1 cut(s) 154
ScrFI CCNGG 8 cut(s) 84, 138, 191, 1017, 1067, 1068, 1154, 1211
SduI GDGCHC 2 cut(s) 992, 1196
SfaNI GCATC 5 cut(s) 33, 445, 490, 565, 676
SfcI CTRYAG 1 cut(s) 1050
SmaI CCCGGG 1 cut(s) 1068
SmlI CTYRAG 1 cut(s) 1169
SmoI CTYRAG 1 cut(s) 1169
SphI GCATGC 1 cut(s) 474
Sse9I AATT 4 cut(s) 370, 861, 952, 964
SsiI CCGC 5 cut(s) 98, 160, 312, 1102, 1128
SspI AATATT 1 cut(s) 324
SspMI CTAG 2 cut(s) 537, 1109
StyD4I CCNGG 8 cut(s) 82, 136, 189, 1015, 1065, 1066, 1152, 1209
TaaI ACNGT 2 cut(s) 784, 1024
TaiI ACGT 2 cut(s) 634, 792
TaqI TCGA 1 cut(s) 962
TasI AATT 4 cut(s) 370, 861, 952, 964
TatI WGTACW 3 cut(s) 152, 227, 1263
TauI GCSGC 3 cut(s) 162, 314, 1105
TfiI GAWTC 1 cut(s) 1230
Tru1I TTAA 2 cut(s) 599, 1170
Tru9I TTAA 2 cut(s) 599, 1170
TscAI CASTG 5 cut(s) 169, 391, 787, 1062, 1201
TseFI GTSAC 4 cut(s) 193, 410, 811, 833
Tsp45I GTSAC 4 cut(s) 193, 410, 811, 833
TspDTI ATGAA 1 cut(s) 818
TspGWI ACGGA 2 cut(s) 469, 744
TspMI CCCGGG 1 cut(s) 1066
TspRI CASTG 5 cut(s) 169, 391, 787, 1062, 1201
Vha464I CTTAAG 1 cut(s) 1169
XapI RAATTY 2 cut(s) 952, 964
XbaI TCTAGA 1 cut(s) 536
XceI RCATGY 1 cut(s) 474
XcmI CCANNNNNNNNNTGG 1 cut(s) 697
XmaI CCCGGG 1 cut(s) 1066
XmiI GTMKAC 2 cut(s) 622, 786
XmnI GAANNNNTTC 2 cut(s) 204, 870
XspI CTAG 2 cut(s) 537, 1109
ZrmI AGTACT 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.