Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0004118

Physical Location & Seq

Genomic Coordinates Forward (+)

13944525 .. 13948887

Gene Structure 4363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g19550.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGGAACAGCATAGGTTCAAGCAGCAAGCCATGATACAGCAGTCGCTTTACCAACACCCTGCCCTCGTAGCTGCCCCTCAGATAGAGCCTATCTTGAGTGGAAATCTGCCTCCTGGGTTTGATTCAAGTACTTGCCGCAGTGTTTATGTCGGAAATATTCACCCACAAGTTACTGAACCCCTTATGCAAGAAGTCTTTGCCAGTACTGGTCCACTTGAAGGATGCAAGCTCATAAGGAAGGATAAGTCATCCTATGGATTTGTTGACTACTTTGATCGTAGGTCAGCTGCTCTTGCTATTGTGACTCTTAATGGCAGGCATCTGTTTGGGCAGCCGATTAAAGTTAATTGGGCATATGCAAGTAGTCAGAGAGAGGATACATCAGGTCACTTTAATATTTTTGTTGGTGATCTTAGCCCTGAGGTTACTGATGCTACACTGTTTGCATGTTTTTCTGGTTATTCTAGTTGTTCAGATGCTAGAGTTATGTGGGATCAGAAAACTGGGCGTTCAAGGGGCTTTGGGTTTGTTTCTTTCCGAAATCAGCAGGAGGCCCAAAGTGCAATTAATGACTTAAATGGAAAGTGGCTTGGAAGTAGACAGATTCGGTGCAATTGGGCCACAAAAGGTGCTACTTCCAATGATGACAAGCAGAGTTCTGATTCTAAAAATGTTGTAGAGCTGACGAATGGAACATCAGACGATGGTCAGGAGAAGCCTAATGAAGATGCTCCAGAGAACAATCCTCAGTATACTACGGTTTATGTGGGCAATCTGGCTCCTGAGGTTACTTCAGTTGACCTCCATCGTCATTTCCATGGCCTTGGTGCTGGAGTTATTGAAGATGTTCGGGTGCAGAGAGATAAAGGTTTTGGGTTTGTGAGATACAGCACCCATTCTGAAGCAGCTGTGGCTATCCAGTTGGGGAATGCTAGGTTTCTCTGTGGCAAACCAATTAAGTGTTCATGGGGCAGCAAGCCTACTCCACCAGGGACAAGCTCAACCCCCCTGCCGCCACCAGCTGCAGTTCACATGCCAGGCTTCTCAGCCGCTGACCTTGCGGCCTGTGAAAGACAAATGGCATTGAGCAAAATGGGTGGTGCGCAAGCCCTCATGCTTCCGCAGGGTCAGCATGCTCTGAAGGCAGCCATGGGGATGGGTGCTGGAGCCAGTCAGGCCATATACGACGGTGGCTACCATAATGTAGCAACAACTCAGCAACTCATGTACTACCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005764 GO:0005773 GO:0006355 GO:0006357 GO:0006915 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0008150 GO:0008219 GO:0008543 GO:0009719 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010494 GO:0010556 GO:0012501 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0035770 GO:0036464 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044344 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070848 GO:0070887 GO:0071310 GO:0071363 GO:0071495 GO:0071774 GO:0080090 GO:1903506 GO:1990904 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

413

Amino Acids

44.75

Weight (kDa)

6.86

Isoelectric Point (pI)

42.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004118)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17370 AT1G17370 AT1G54080 AT3G14100
fragaria_vesca	FvH4_1g09080 FvH4_6g35150
malus_domestica	MD02G1096200.v1.1 MD09G1178500.v1.1 MD17G1148300.v1.1
prunus_persica	Prupe.3G037700_v2.0.a1 Prupe.3G037700_v2.0.a1 Prupe.7G194700_v2.0.a1 Prupe.7G194700_v2.0.a1
pyrus_communis	pycom02g07600 pycom15g19550 pycom17g14160
rosa_chinensis	RchiOBHm_Chr2g0095491 RchiOBHm_Chr2g0146411
rosa_laevigata	RLG00000016572 RLG00000020198
rosa_multiflora	Rmu_sc0006076.1_g000007
rosa_roxburghii	Rroxscaffold_2G00100120 Rroxscaffold_2G00146260
rosa_rugosa	Rorug02G0051600 Rorug02G0394100 Rorug02G0394200
rosa_samantha	Rh2AG450900 Rh2BG100900 Rh2BG463300 Rh2CG437700 Rh2DG472300
rosa_wichuraiana	Rw2G007550 Rw2G036800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1104
AccI	GTMKAC	2 cut(s)	598, 752
AciI	CCGC	5 cut(s)	136, 1013, 1050, 1061, 1121
AclWI	GGATC	1 cut(s)	501
AcuI	CTGAAG	3 cut(s)	777, 921, 1160
AfaI	GTAC	3 cut(s)	130, 205, 1229
AfiI	CCNNNNNNNGG	1 cut(s)	218
AgsI	TTSAA	5 cut(s)	19, 126, 218, 513, 842
AjnI	CCWGG	3 cut(s)	112, 988, 1036
AjuI	GAANNNNNNNTTGG	2 cut(s)	946, 978
AluBI	AGCT	7 cut(s)	71, 229, 287, 682, 908, 999, 1022
AluI	AGCT	7 cut(s)	71, 229, 287, 682, 908, 999, 1022
AlwI	GGATC	1 cut(s)	501
AlwNI	CAGNNNCTG	1 cut(s)	1052
AoxI	GGCC	5 cut(s)	552, 618, 820, 1062, 1176
ApeKI	GCWGC	8 cut(s)	22, 71, 287, 331, 905, 972, 1022, 1145
AseI	ATTAAT	1 cut(s)	567
Asp700I	GAANNNNTTC	1 cut(s)	846
AspLEI	GCGC	1 cut(s)	1105
AspS9I	GGNCC	3 cut(s)	209, 553, 618
AsuHPI	GGTGA	2 cut(s)	152, 419
AvaII	GGWCC	1 cut(s)	209
AxyI	CCTNAGG	2 cut(s)	420, 783
BaeI	ACNNNNGTAYC	2 cut(s)	26, 59
BbvI	GCAGC	8 cut(s)	34, 58, 274, 343, 917, 984, 1009, 1157
BccI	CCATC	3 cut(s)	698, 813, 1150
BciT130I	CCWGG	3 cut(s)	114, 990, 1038
BciVI	GTATCC	1 cut(s)	370
BfaI	CTAG	3 cut(s)	465, 480, 933
BfmI	CTRYAG	1 cut(s)	1023
BfuI	GTATCC	1 cut(s)	370
BglI	GCCNNNNNGGC	1 cut(s)	1175
BmcAI	AGTACT	2 cut(s)	130, 205
Bme1390I	CCNGG	3 cut(s)	114, 990, 1038
Bme18I	GGWCC	1 cut(s)	209
BmgT120I	GGNCC	3 cut(s)	209, 553, 618
BmiI	GGNNCC	2 cut(s)	780, 1168
BmrFI	CCNGG	3 cut(s)	114, 990, 1038
BmrI	ACTGGG	1 cut(s)	513
BmsI	GCATC	5 cut(s)	212, 328, 421, 466, 718
BmuI	ACTGGG	1 cut(s)	513
BoxI	GACNNNNGTC	1 cut(s)	705
BpmI	CTGGAG	3 cut(s)	717, 852, 1185
BpuEI	CTTGAG	1 cut(s)	115
BsaJI	CCNNGG	5 cut(s)	113, 817, 823, 989, 1149
Bsc4I	CCNNNNNNNGG	1 cut(s)	218
Bse1I	ACTGG	6 cut(s)	201, 211, 508, 919, 1170, 1234
Bse21I	CCTNAGG	2 cut(s)	420, 783
BseBI	CCWGG	3 cut(s)	114, 990, 1038
BseDI	CCNNGG	5 cut(s)	113, 817, 823, 989, 1149
BseGI	GGATG	3 cut(s)	227, 248, 1161
BseLI	CCNNNNNNNGG	1 cut(s)	218
BseMII	CTCAG	6 cut(s)	92, 411, 761, 774, 1059, 1229
BseNI	ACTGG	6 cut(s)	201, 211, 508, 919, 1170, 1234
BseXI	GCAGC	8 cut(s)	34, 58, 274, 343, 917, 984, 1009, 1157
BsgI	GTGCAG	1 cut(s)	875
BshFI	GGCC	5 cut(s)	554, 620, 822, 1064, 1178
BslFI	GGGAC	1 cut(s)	1006
BslI	CCNNNNNNNGG	1 cut(s)	218
BsmFI	GGGAC	1 cut(s)	1006
BsmI	GAATGC	1 cut(s)	934
BsnI	GGCC	5 cut(s)	554, 620, 822, 1064, 1178
Bsp143I	GATC	3 cut(s)	274, 409, 493
Bsp19I	CCATGG	2 cut(s)	817, 1149
BspACI	CCGC	5 cut(s)	136, 1013, 1050, 1061, 1121
BspANI	GGCC	5 cut(s)	554, 620, 822, 1064, 1178
BspCNI	CTCAG	6 cut(s)	91, 412, 760, 775, 1058, 1228
BspLI	GGNNCC	2 cut(s)	780, 1168
BspMAI	CTGCAG	1 cut(s)	1027
BspPI	GGATC	1 cut(s)	501
BsrI	ACTGG	6 cut(s)	201, 211, 508, 919, 1170, 1234
BssECI	CCNNGG	5 cut(s)	113, 817, 823, 989, 1149
BssMI	GATC	3 cut(s)	274, 409, 493
BssNAI	GTATAC	1 cut(s)	753
BssT1I	CCWWGG	3 cut(s)	817, 823, 1149
Bst1107I	GTATAC	1 cut(s)	753
Bst2UI	CCWGG	3 cut(s)	114, 990, 1038
Bst4CI	ACNGT	3 cut(s)	441, 760, 1190
BstC8I	GCNNGC	6 cut(s)	27, 227, 317, 977, 1107, 1134
BstDEI	CTNAG	7 cut(s)	78, 413, 420, 747, 783, 1045, 1215
BstDSI	CCRYGG	2 cut(s)	817, 1149
BstF5I	GGATG	3 cut(s)	227, 248, 1161
BstHHI	GCGC	1 cut(s)	1105
BstKTI	GATC	3 cut(s)	277, 412, 496
BstMBI	GATC	3 cut(s)	274, 409, 493
BstMWI	GCNNNNNNNGC	8 cut(s)	68, 293, 560, 911, 1058, 1129, 1142, 1175
BstNI	CCWGG	3 cut(s)	114, 990, 1038
BstNSI	RCATGY	3 cut(s)	450, 1036, 1136
BstPAI	GACNNNNGTC	1 cut(s)	705
BstSCI	CCNGG	3 cut(s)	112, 988, 1036
BstSFI	CTRYAG	1 cut(s)	1023
BstV1I	GCAGC	8 cut(s)	34, 58, 274, 343, 917, 984, 1009, 1157
BstXI	CCANNNNNNTGG	2 cut(s)	824, 1156
BstZ17I	GTATAC	1 cut(s)	753
Bsu36I	CCTNAGG	2 cut(s)	420, 783
BsuI	GTATCC	1 cut(s)	370
BsuRI	GGCC	5 cut(s)	554, 620, 822, 1064, 1178
BtgI	CCRYGG	2 cut(s)	817, 1149
BtsCI	GGATG	3 cut(s)	227, 248, 1161
BtsI	GCAGTG	1 cut(s)	145
BtsIMutI	CAGTG	2 cut(s)	145, 437
Cac8I	GCNNGC	6 cut(s)	27, 227, 317, 977, 1107, 1134
CaiI	CAGNNNCTG	1 cut(s)	1052
CfoI	GCGC	1 cut(s)	1105
Cfr13I	GGNCC	3 cut(s)	209, 553, 618
Csp6I	GTAC	3 cut(s)	129, 204, 1228
CspCI	CAANNNNNGTGG	2 cut(s)	1078, 1113
CviAII	CATG	9 cut(s)	31, 447, 818, 966, 1033, 1114, 1133, 1150, 1225
CviQI	GTAC	3 cut(s)	129, 204, 1228
DdeI	CTNAG	7 cut(s)	78, 413, 420, 747, 783, 1045, 1215
DpnI	GATC	3 cut(s)	276, 411, 495
DpnII	GATC	3 cut(s)	274, 409, 493
Eco130I	CCWWGG	3 cut(s)	817, 823, 1149
Eco47I	GGWCC	1 cut(s)	209
Eco57I	CTGAAG	3 cut(s)	777, 921, 1160
Eco81I	CCTNAGG	2 cut(s)	420, 783
EcoRII	CCWGG	3 cut(s)	112, 988, 1036
EcoT14I	CCWWGG	3 cut(s)	817, 823, 1149
ErhI	CCWWGG	3 cut(s)	817, 823, 1149
FaeI	CATG	9 cut(s)	34, 450, 821, 969, 1036, 1117, 1136, 1153, 1228
FaqI	GGGAC	1 cut(s)	1006
FatI	CATG	9 cut(s)	30, 446, 817, 965, 1032, 1113, 1132, 1149, 1224
FauNDI	CATATG	1 cut(s)	355
FblI	GTMKAC	2 cut(s)	598, 752
FokI	GGATG	3 cut(s)	234, 235, 1168
FspBI	CTAG	3 cut(s)	465, 480, 933
FspI	TGCGCA	1 cut(s)	1104
GlaI	GCGC	1 cut(s)	1104
GsuI	CTGGAG	3 cut(s)	717, 852, 1185
HaeIII	GGCC	5 cut(s)	554, 620, 822, 1064, 1178
HhaI	GCGC	1 cut(s)	1105
Hin1II	CATG	9 cut(s)	34, 450, 821, 969, 1036, 1117, 1136, 1153, 1228
Hin6I	GCGC	1 cut(s)	1103
HinP1I	GCGC	1 cut(s)	1103
HincII	GTYRAC	2 cut(s)	265, 799
HindII	GTYRAC	2 cut(s)	265, 799
HinfI	GANTC	4 cut(s)	122, 304, 604, 662
HphI	GGTGA	2 cut(s)	152, 419
Hpy166II	GTNNAC	6 cut(s)	212, 265, 599, 753, 799, 1030
Hpy188III	TCNNGA	4 cut(s)	94, 710, 734, 782
Hpy8I	GTNNAC	6 cut(s)	212, 265, 599, 753, 799, 1030
Hpy99I	CGWCG	1 cut(s)	1190
HpyAV	CCTTC	3 cut(s)	212, 232, 1135
HpyCH4III	ACNGT	3 cut(s)	441, 760, 1190
HpyCH4V	TGCA	8 cut(s)	187, 225, 359, 446, 563, 612, 856, 1025
HpyF10VI	GCNNNNNNNGC	8 cut(s)	68, 293, 560, 911, 1058, 1129, 1142, 1175
HpyF3I	CTNAG	7 cut(s)	78, 413, 420, 747, 783, 1045, 1215
Hsp92II	CATG	9 cut(s)	34, 450, 821, 969, 1036, 1117, 1136, 1153, 1228
HspAI	GCGC	1 cut(s)	1103
Kzo9I	GATC	3 cut(s)	274, 409, 493
LmnI	GCTCC	3 cut(s)	736, 784, 1166
Lsp1109I	GCAGC	8 cut(s)	34, 58, 274, 343, 917, 984, 1009, 1157
LweI	GCATC	5 cut(s)	212, 328, 421, 466, 718
MaeI	CTAG	3 cut(s)	465, 480, 933
MaeIII	GTNAC	5 cut(s)	169, 301, 386, 424, 787
MalI	GATC	3 cut(s)	276, 411, 495
MboI	GATC	3 cut(s)	274, 409, 493
MboII	GAAGA	2 cut(s)	737, 854
MfeI	CAATTG	1 cut(s)	613
MluCI	AATT	4 cut(s)	346, 564, 613, 954
MlyI	GAGTC	1 cut(s)	298
MmeI	TCCRAC	1 cut(s)	130
MroXI	GAANNNNTTC	1 cut(s)	846
MseI	TTAA	7 cut(s)	309, 339, 345, 393, 567, 575, 957
MslI	CAYNNNNRTG	2 cut(s)	816, 1154
MspA1I	CMGCKG	4 cut(s)	287, 908, 1022, 1052
MspR9I	CCNGG	3 cut(s)	114, 990, 1038
MunI	CAATTG	1 cut(s)	613
Mva1269I	GAATGC	1 cut(s)	934
MvaI	CCWGG	3 cut(s)	114, 990, 1038
MwoI	GCNNNNNNNGC	8 cut(s)	68, 293, 560, 911, 1058, 1129, 1142, 1175
NcoI	CCATGG	2 cut(s)	817, 1149
NdeI	CATATG	1 cut(s)	355
NdeII	GATC	3 cut(s)	274, 409, 493
NlaIII	CATG	9 cut(s)	34, 450, 821, 969, 1036, 1117, 1136, 1153, 1228
NlaIV	GGNNCC	2 cut(s)	780, 1168
NmuCI	GTSAC	2 cut(s)	301, 386
NsbI	TGCGCA	1 cut(s)	1104
NspI	RCATGY	3 cut(s)	450, 1036, 1136
PaeI	GCATGC	1 cut(s)	1136
PctI	GAATGC	1 cut(s)	934
PdmI	GAANNNNTTC	1 cut(s)	846
PfeI	GAWTC	3 cut(s)	122, 604, 662
PleI	GAGTC	1 cut(s)	298
PpsI	GAGTC	1 cut(s)	298
PshAI	GACNNNNGTC	1 cut(s)	705
PshBI	ATTAAT	1 cut(s)	567
Psp6I	CCWGG	3 cut(s)	112, 988, 1036
PspGI	CCWGG	3 cut(s)	112, 988, 1036
PspN4I	GGNNCC	2 cut(s)	780, 1168
PspPI	GGNCC	3 cut(s)	209, 553, 618
PstI	CTGCAG	1 cut(s)	1027
PstNI	CAGNNNCTG	1 cut(s)	1052
PvuII	CAGCTG	3 cut(s)	287, 908, 1022
RsaI	GTAC	3 cut(s)	130, 205, 1229
RsaNI	GTAC	3 cut(s)	129, 204, 1228
RseI	CAYNNNNRTG	2 cut(s)	816, 1154
SaqAI	TTAA	7 cut(s)	309, 339, 345, 393, 567, 575, 957
Sau3AI	GATC	3 cut(s)	274, 409, 493
Sau96I	GGNCC	3 cut(s)	209, 553, 618
ScaI	AGTACT	2 cut(s)	130, 205
SchI	GAGTC	1 cut(s)	298
ScrFI	CCNGG	3 cut(s)	114, 990, 1038
SfaNI	GCATC	5 cut(s)	212, 328, 421, 466, 718
SfcI	CTRYAG	1 cut(s)	1023
SinI	GGWCC	1 cut(s)	209
SmiMI	CAYNNNNRTG	2 cut(s)	816, 1154
SmlI	CTYRAG	1 cut(s)	94
SmoI	CTYRAG	1 cut(s)	94
SphI	GCATGC	1 cut(s)	1136
Sse9I	AATT	4 cut(s)	346, 564, 613, 954
SsiI	CCGC	5 cut(s)	136, 1013, 1050, 1061, 1121
SspI	AATATT	2 cut(s)	157, 397
SspMI	CTAG	3 cut(s)	465, 480, 933
StyD4I	CCNGG	3 cut(s)	112, 988, 1036
StyI	CCWWGG	3 cut(s)	817, 823, 1149
TaaI	ACNGT	3 cut(s)	441, 760, 1190
TasI	AATT	4 cut(s)	346, 564, 613, 954
TatI	WGTACW	3 cut(s)	128, 203, 1227
TauI	GCSGC	4 cut(s)	138, 1015, 1052, 1064
TfiI	GAWTC	3 cut(s)	122, 604, 662
Tru1I	TTAA	7 cut(s)	309, 339, 345, 393, 567, 575, 957
Tru9I	TTAA	7 cut(s)	309, 339, 345, 393, 567, 575, 957
TscAI	CASTG	2 cut(s)	145, 444
TseFI	GTSAC	2 cut(s)	301, 386
TseI	GCWGC	8 cut(s)	22, 71, 287, 331, 905, 972, 1022, 1145
Tsp45I	GTSAC	2 cut(s)	301, 386
TspDTI	ATGAA	2 cut(s)	738, 954
TspRI	CASTG	2 cut(s)	145, 444
VpaK11BI	GGWCC	1 cut(s)	209
VspI	ATTAAT	1 cut(s)	567
XceI	RCATGY	3 cut(s)	450, 1036, 1136
XmiI	GTMKAC	2 cut(s)	598, 752
XmnI	GAANNNNTTC	1 cut(s)	846
XspI	CTAG	3 cut(s)	465, 480, 933
ZrmI	AGTACT	2 cut(s)	130, 205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.