MD02G1096200.v1.1

Oligouridylate-binding protein 1-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Forward (+)
7608101 .. 7613291
5191 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1096200.v1.1.491

Sequence Viewer

Length: 1239 bp
ATGCAACAGCAGAGGTTCAAGCAGCAAGCCATGATGCAGCAGTCGCTATACCAACACCCTGCCCTCTTAGGGGCCCCTCAGATAGAGCCTATCTTGAGTGGAAATCTGCCTCCTGGGTTTGATTCAAGTACTTGCCGCAGCGTTTATGTTGGAAATATTCACCCACAAGTTACCGAACCCCTTATGCAAGAAGTTTTTGCCAGTACTGGTCCACTTGAAGGATGCAAGCTCATAAGGAAGGATAAGTCATCCTATGGATTTGTTGACTACTTTGATCGTAGGTCAGCTGCTCTTGCTATTGTGACCCTTAATGGCAGGCATCTATTTGGGCAGCCGATTAAAGTTAATTGGGCATATGCAAGTAGTCAGAGAGAGGATACATCAGGTCATTTTAATATTTTTGTTGGTGATCTTAGCCCTGAGGTTACTGATGCTACACTGTTTGCATGCTTTTCTGGTTATTCCAGTTGTTCAGATGCTAGAGTTATGTGGGATCAGAAAACTGGGCGTTCAAGGGGCTTTGGGTTTGTTTCTTTCCGAAATCAGCAGGAGGCCCAAAGTGCAATTAATGACTTAAATGGAAAGTGGCTTGGAAGTAGACAGATTCGGTGCAATTGGGCCACAAAGGGTGCTACTTCCAGTGATGACAAGCAGAGTACTGATTCTAAAAGTGTTGTAGAGCTGACGAATGGAACGTCAGACGATGGTCAGGAGAAGCCTAATGAAGATGCTCCAGAGAACAATCCTCAGTATACTACAGTTTATGTGGGCAATCTATCTCCCGAGGTTACTTCAGCTGACCTCCATCGTCATTTCCATGGCCTTGGTGCCGGAGTTATTGAAGATGTTCGGGTGCAGCGAGATAAAGGTTTTGGGTTTGTGAGATACAGTACGCATTCTGAAGCAGCTGTGGCTATCCAGTTGGGGAATGCTAGGTTTCTGTGTGGCAAACCGATTAAGTGTTCATGGGGCAGCAAGCCTACTCCACCAGGGACAAGCTCGACCCCCCTGCCGCCACCAGCTGCAGTTCACATTCCAGGTTTCTCAGCCGCCGACCTTGTGGCCTATGAAAGACAACTGGCATTGAGCAAAATGGGTGGCGCCCAAGCCCTCATGCTTCCGCAGGGTCAGCATGCACTGAAGGCAGCCATGGGGTTGGGTGCTGGAGCTAGTCAGGCCATATACGACGGTGGCTACCATAATGTAGCAACAACTCAGCAACTCATGTACTACCAGTAA

Protein Analysis

413

Amino Acids

44.74

Weight (kDa)

7.16

Isoelectric Point (pI)

41.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 48 - 114 5.8e-12 RNA recognition motif
RRM_1 PF00076 133 - 203 3e-19 RNA recognition motif
RRM_1 PF00076 254 - 320 3.3e-12 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 827, 1100
AccI GTMKAC 2 cut(s) 598, 752
AciI CCGC 4 cut(s) 136, 1013, 1050, 1121
AclWI GGATC 1 cut(s) 501
AcuI CTGAAG 3 cut(s) 777, 921, 1160
AcyI GRCGYC 1 cut(s) 1101
AfaI GTAC 5 cut(s) 130, 205, 658, 892, 1229
AfiI CCNNNNNNNGG 3 cut(s) 69, 70, 218
AgsI TTSAA 5 cut(s) 19, 126, 218, 513, 842
AjnI CCWGG 3 cut(s) 112, 988, 1036
AluBI AGCT 8 cut(s) 229, 287, 682, 797, 908, 999, 1022, 1169
AluI AGCT 8 cut(s) 229, 287, 682, 797, 908, 999, 1022, 1169
AlwI GGATC 1 cut(s) 501
Ama87I CYCGRG 1 cut(s) 782
AoxI GGCC 6 cut(s) 72, 552, 618, 820, 1062, 1176
ApaI GGGCCC 1 cut(s) 76
ArsI GACNNNNNNTTYG 2 cut(s) 680, 712
AseI ATTAAT 1 cut(s) 567
Asp700I GAANNNNTTC 1 cut(s) 846
AspLEI GCGC 1 cut(s) 1103
AspS9I GGNCC 5 cut(s) 72, 73, 209, 553, 618
AsuHPI GGTGA 2 cut(s) 152, 419
AvaI CYCGRG 1 cut(s) 782
AvaII GGWCC 1 cut(s) 209
AxyI CCTNAGG 1 cut(s) 420
BaeGI GKGCMC 1 cut(s) 76
BanI GGYRCC 2 cut(s) 827, 1100
BanII GRGCYC 1 cut(s) 76
BccI CCATC 2 cut(s) 698, 813
BcgI CGANNNNNNTGC 2 cut(s) 991, 1025
BciT130I CCWGG 3 cut(s) 114, 990, 1038
BciVI GTATCC 1 cut(s) 370
BfaI CTAG 3 cut(s) 480, 933, 1170
BfmI CTRYAG 2 cut(s) 756, 1023
BfoI RGCGCY 1 cut(s) 1104
BfuI GTATCC 1 cut(s) 370
BmcAI AGTACT 3 cut(s) 130, 205, 658
Bme1390I CCNGG 3 cut(s) 114, 990, 1038
Bme18I GGWCC 1 cut(s) 209
BmeT110I CYCGRG 1 cut(s) 782
BmgT120I GGNCC 5 cut(s) 72, 73, 209, 553, 618
BmiI GGNNCC 5 cut(s) 73, 74, 75, 829, 1102
BmrFI CCNGG 3 cut(s) 114, 990, 1038
BmrI ACTGGG 1 cut(s) 513
BmsI GCATC 6 cut(s) 24, 212, 328, 421, 466, 718
BmuI ACTGGG 1 cut(s) 513
BoxI GACNNNNGTC 1 cut(s) 705
BpmI CTGGAG 2 cut(s) 717, 1185
BpuEI CTTGAG 1 cut(s) 115
BsaHI GRCGYC 1 cut(s) 1101
BsaJI CCNNGG 6 cut(s) 113, 783, 817, 823, 989, 1149
Bsc4I CCNNNNNNNGG 3 cut(s) 69, 70, 218
Bse1I ACTGG 8 cut(s) 201, 211, 465, 508, 639, 919, 1083, 1234
Bse21I CCTNAGG 1 cut(s) 420
BseBI CCWGG 3 cut(s) 114, 990, 1038
BseDI CCNNGG 6 cut(s) 113, 783, 817, 823, 989, 1149
BseGI GGATG 2 cut(s) 227, 248
BseLI CCNNNNNNNGG 3 cut(s) 69, 70, 218
BseMII CTCAG 5 cut(s) 92, 411, 761, 1059, 1229
BseNI ACTGG 8 cut(s) 201, 211, 465, 508, 639, 919, 1083, 1234
BseSI GKGCMC 1 cut(s) 76
BsgI GTGCAG 1 cut(s) 875
BshFI GGCC 6 cut(s) 74, 554, 620, 822, 1064, 1178
BshNI GGYRCC 2 cut(s) 827, 1100
BsiHKCI CYCGRG 1 cut(s) 782
BsiSI CCGG 1 cut(s) 831
BslFI GGGAC 1 cut(s) 1006
BslI CCNNNNNNNGG 3 cut(s) 69, 70, 218
BsmFI GGGAC 1 cut(s) 1006
BsmI GAATGC 2 cut(s) 895, 934
BsnI GGCC 6 cut(s) 74, 554, 620, 822, 1064, 1178
BsoBI CYCGRG 1 cut(s) 782
Bsp120I GGGCCC 1 cut(s) 72
Bsp1286I GDGCHC 1 cut(s) 76
Bsp143I GATC 3 cut(s) 274, 409, 493
Bsp19I CCATGG 2 cut(s) 817, 1149
BspACI CCGC 4 cut(s) 136, 1013, 1050, 1121
BspANI GGCC 6 cut(s) 74, 554, 620, 822, 1064, 1178
BspCNI CTCAG 5 cut(s) 91, 412, 760, 1058, 1228
BspLI GGNNCC 5 cut(s) 73, 74, 75, 829, 1102
BspMAI CTGCAG 1 cut(s) 1027
BspPI GGATC 1 cut(s) 501
BspT107I GGYRCC 2 cut(s) 827, 1100
BsrI ACTGG 8 cut(s) 201, 211, 465, 508, 639, 919, 1083, 1234
BssECI CCNNGG 6 cut(s) 113, 783, 817, 823, 989, 1149
BssMI GATC 3 cut(s) 274, 409, 493
BssNAI GTATAC 1 cut(s) 753
BssNI GRCGYC 1 cut(s) 1101
BssT1I CCWWGG 3 cut(s) 817, 823, 1149
Bst1107I GTATAC 1 cut(s) 753
Bst2UI CCWGG 3 cut(s) 114, 990, 1038
Bst4CI ACNGT 4 cut(s) 441, 760, 890, 1190
BstACI GRCGYC 1 cut(s) 1101
BstC8I GCNNGC 6 cut(s) 27, 227, 317, 448, 977, 1134
BstDEI CTNAG 7 cut(s) 67, 78, 413, 420, 747, 1045, 1215
BstDSI CCRYGG 2 cut(s) 817, 1149
BstF5I GGATG 2 cut(s) 227, 248
BstH2I RGCGCY 1 cut(s) 1104
BstHHI GCGC 1 cut(s) 1103
BstKTI GATC 3 cut(s) 277, 412, 496
BstMBI GATC 3 cut(s) 274, 409, 493
BstMWI GCNNNNNNNGC 7 cut(s) 43, 293, 560, 911, 1129, 1142, 1175
BstNI CCWGG 3 cut(s) 114, 990, 1038
BstNSI RCATGY 2 cut(s) 450, 1136
BstPAI GACNNNNGTC 1 cut(s) 705
BstSCI CCNGG 3 cut(s) 112, 988, 1036
BstSFI CTRYAG 2 cut(s) 756, 1023
BstSLI GKGCMC 1 cut(s) 76
BstXI CCANNNNNNTGG 2 cut(s) 824, 1156
BstZ17I GTATAC 1 cut(s) 753
Bsu36I CCTNAGG 1 cut(s) 420
BsuI GTATCC 1 cut(s) 370
BsuRI GGCC 6 cut(s) 74, 554, 620, 822, 1064, 1178
BtgI CCRYGG 2 cut(s) 817, 1149
BtsCI GGATG 2 cut(s) 227, 248
BtsIMutI CAGTG 3 cut(s) 437, 646, 1136
Cac8I GCNNGC 6 cut(s) 27, 227, 317, 448, 977, 1134
CfoI GCGC 1 cut(s) 1103
Cfr13I GGNCC 5 cut(s) 72, 73, 209, 553, 618
Csp6I GTAC 5 cut(s) 129, 204, 657, 891, 1228
CspCI CAANNNNNGTGG 2 cut(s) 1078, 1113
CviAII CATG 8 cut(s) 31, 447, 818, 966, 1114, 1133, 1150, 1225
CviQI GTAC 5 cut(s) 129, 204, 657, 891, 1228
DdeI CTNAG 7 cut(s) 67, 78, 413, 420, 747, 1045, 1215
DinI GGCGCC 1 cut(s) 1102
DpnI GATC 3 cut(s) 276, 411, 495
DpnII GATC 3 cut(s) 274, 409, 493
Eco130I CCWWGG 3 cut(s) 817, 823, 1149
Eco24I GRGCYC 1 cut(s) 76
Eco47I GGWCC 1 cut(s) 209
Eco57I CTGAAG 3 cut(s) 777, 921, 1160
Eco81I CCTNAGG 1 cut(s) 420
Eco88I CYCGRG 1 cut(s) 782
EcoO109I RGGNCCY 2 cut(s) 72, 73
EcoRII CCWGG 3 cut(s) 112, 988, 1036
EcoT14I CCWWGG 3 cut(s) 817, 823, 1149
EcoT38I GRGCYC 1 cut(s) 76
EgeI GGCGCC 1 cut(s) 1102
EheI GGCGCC 1 cut(s) 1102
ErhI CCWWGG 3 cut(s) 817, 823, 1149
FaeI CATG 8 cut(s) 34, 450, 821, 969, 1117, 1136, 1153, 1228
FaqI GGGAC 1 cut(s) 1006
FatI CATG 8 cut(s) 30, 446, 817, 965, 1113, 1132, 1149, 1224
FauNDI CATATG 1 cut(s) 355
FblI GTMKAC 2 cut(s) 598, 752
FokI GGATG 2 cut(s) 234, 235
FriOI GRGCYC 1 cut(s) 76
FspBI CTAG 3 cut(s) 480, 933, 1170
GlaI GCGC 1 cut(s) 1102
GsuI CTGGAG 2 cut(s) 717, 1185
HaeII RGCGCY 1 cut(s) 1104
HaeIII GGCC 6 cut(s) 74, 554, 620, 822, 1064, 1178
HapII CCGG 1 cut(s) 831
HhaI GCGC 1 cut(s) 1103
Hin1I GRCGYC 1 cut(s) 1101
Hin1II CATG 8 cut(s) 34, 450, 821, 969, 1117, 1136, 1153, 1228
Hin6I GCGC 1 cut(s) 1101
HinP1I GCGC 1 cut(s) 1101
HincII GTYRAC 1 cut(s) 265
HindII GTYRAC 1 cut(s) 265
HinfI GANTC 3 cut(s) 122, 604, 662
HpaII CCGG 1 cut(s) 831
HphI GGTGA 2 cut(s) 152, 419
Hpy166II GTNNAC 5 cut(s) 212, 265, 599, 753, 1030
Hpy188I TCNGA 7 cut(s) 81, 369, 475, 498, 539, 700, 901
Hpy188III TCNNGA 4 cut(s) 94, 710, 734, 782
Hpy8I GTNNAC 5 cut(s) 212, 265, 599, 753, 1030
Hpy99I CGWCG 1 cut(s) 1190
HpyAV CCTTC 3 cut(s) 212, 232, 1135
HpyCH4III ACNGT 4 cut(s) 441, 760, 890, 1190
HpyCH4IV ACGT 1 cut(s) 695
HpyF10VI GCNNNNNNNGC 7 cut(s) 43, 293, 560, 911, 1129, 1142, 1175
HpyF3I CTNAG 7 cut(s) 67, 78, 413, 420, 747, 1045, 1215
HpySE526I ACGT 1 cut(s) 695
Hsp92I GRCGYC 1 cut(s) 1101
Hsp92II CATG 8 cut(s) 34, 450, 821, 969, 1117, 1136, 1153, 1228
HspAI GCGC 1 cut(s) 1101
KasI GGCGCC 1 cut(s) 1100
Kzo9I GATC 3 cut(s) 274, 409, 493
LmnI GCTCC 2 cut(s) 736, 1166
LweI GCATC 6 cut(s) 24, 212, 328, 421, 466, 718
MaeI CTAG 3 cut(s) 480, 933, 1170
MaeII ACGT 1 cut(s) 695
MaeIII GTNAC 4 cut(s) 169, 301, 424, 787
MalI GATC 3 cut(s) 276, 411, 495
MboI GATC 3 cut(s) 274, 409, 493
MboII GAAGA 2 cut(s) 737, 854
MfeI CAATTG 1 cut(s) 613
MhlI GDGCHC 1 cut(s) 76
MluCI AATT 3 cut(s) 346, 564, 613
Mly113I GGCGCC 1 cut(s) 1101
MmeI TCCRAC 1 cut(s) 130
MroXI GAANNNNTTC 1 cut(s) 846
MseI TTAA 7 cut(s) 309, 339, 345, 393, 567, 575, 957
MslI CAYNNNNRTG 1 cut(s) 816
MspA1I CMGCKG 4 cut(s) 287, 797, 908, 1022
MspI CCGG 1 cut(s) 831
MspR9I CCNGG 3 cut(s) 114, 990, 1038
MunI CAATTG 1 cut(s) 613
Mva1269I GAATGC 2 cut(s) 895, 934
MvaI CCWGG 3 cut(s) 114, 990, 1038
MwoI GCNNNNNNNGC 7 cut(s) 43, 293, 560, 911, 1129, 1142, 1175
NarI GGCGCC 1 cut(s) 1101
NcoI CCATGG 2 cut(s) 817, 1149
NdeI CATATG 1 cut(s) 355
NdeII GATC 3 cut(s) 274, 409, 493
NlaIII CATG 8 cut(s) 34, 450, 821, 969, 1117, 1136, 1153, 1228
NlaIV GGNNCC 5 cut(s) 73, 74, 75, 829, 1102
NmuCI GTSAC 1 cut(s) 301
NspI RCATGY 2 cut(s) 450, 1136
PaeI GCATGC 2 cut(s) 450, 1136
PcsI WCGNNNNNNNCGW 2 cut(s) 692, 856
PctI GAATGC 2 cut(s) 895, 934
PdmI GAANNNNTTC 1 cut(s) 846
PfeI GAWTC 3 cut(s) 122, 604, 662
PluTI GGCGCC 1 cut(s) 1104
PshAI GACNNNNGTC 1 cut(s) 705
PshBI ATTAAT 1 cut(s) 567
Psp6I CCWGG 3 cut(s) 112, 988, 1036
PspGI CCWGG 3 cut(s) 112, 988, 1036
PspN4I GGNNCC 5 cut(s) 73, 74, 75, 829, 1102
PspOMI GGGCCC 1 cut(s) 72
PspPI GGNCC 5 cut(s) 72, 73, 209, 553, 618
PstI CTGCAG 1 cut(s) 1027
PvuII CAGCTG 4 cut(s) 287, 797, 908, 1022
RsaI GTAC 5 cut(s) 130, 205, 658, 892, 1229
RsaNI GTAC 5 cut(s) 129, 204, 657, 891, 1228
RseI CAYNNNNRTG 1 cut(s) 816
SaqAI TTAA 7 cut(s) 309, 339, 345, 393, 567, 575, 957
Sau3AI GATC 3 cut(s) 274, 409, 493
Sau96I GGNCC 5 cut(s) 72, 73, 209, 553, 618
ScaI AGTACT 3 cut(s) 130, 205, 658
ScrFI CCNGG 3 cut(s) 114, 990, 1038
SduI GDGCHC 1 cut(s) 76
SfaNI GCATC 6 cut(s) 24, 212, 328, 421, 466, 718
SfcI CTRYAG 2 cut(s) 756, 1023
SfoI GGCGCC 1 cut(s) 1102
SinI GGWCC 1 cut(s) 209
SmiMI CAYNNNNRTG 1 cut(s) 816
SmlI CTYRAG 1 cut(s) 94
SmoI CTYRAG 1 cut(s) 94
SphI GCATGC 2 cut(s) 450, 1136
Sse9I AATT 3 cut(s) 346, 564, 613
SsiI CCGC 4 cut(s) 136, 1013, 1050, 1121
SspDI GGCGCC 1 cut(s) 1100
SspI AATATT 2 cut(s) 157, 397
SspMI CTAG 3 cut(s) 480, 933, 1170
StyD4I CCNGG 3 cut(s) 112, 988, 1036
StyI CCWWGG 3 cut(s) 817, 823, 1149
TaaI ACNGT 4 cut(s) 441, 760, 890, 1190
TaiI ACGT 1 cut(s) 698
TaqI TCGA 1 cut(s) 1001
TasI AATT 3 cut(s) 346, 564, 613
TatI WGTACW 4 cut(s) 128, 203, 656, 1227
TauI GCSGC 3 cut(s) 138, 1015, 1052
TfiI GAWTC 3 cut(s) 122, 604, 662
Tru1I TTAA 7 cut(s) 309, 339, 345, 393, 567, 575, 957
Tru9I TTAA 7 cut(s) 309, 339, 345, 393, 567, 575, 957
TscAI CASTG 3 cut(s) 444, 646, 1143
TseFI GTSAC 1 cut(s) 301
Tsp45I GTSAC 1 cut(s) 301
TspDTI ATGAA 3 cut(s) 738, 954, 1083
TspRI CASTG 3 cut(s) 444, 646, 1143
VpaK11BI GGWCC 1 cut(s) 209
VspI ATTAAT 1 cut(s) 567
XceI RCATGY 2 cut(s) 450, 1136
XmiI GTMKAC 2 cut(s) 598, 752
XmnI GAANNNNTTC 1 cut(s) 846
XspI CTAG 3 cut(s) 480, 933, 1170
ZrmI AGTACT 3 cut(s) 130, 205, 658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.