Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0004118

Physical Location & Seq

Genomic Coordinates Forward (+)

7355913 .. 7359943

Gene Structure 4031 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G007550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGCAACAGCAGCAGCAGAGGCTTAAACAACAGCAGCAGCAACAAGCCATGATGCAGCAGTCGCTTTACCAGCACCCTGCTCTCTTAGCCCCGCCGCAGATAGAGCCTATCTTGAGTGGAAATCTGCCTCCTGGGTTTGATTCAAGTACATGCCGCAGTGTGTATGTTGGAAATATTCATCCCCAGGTTACTGATACCCTTCTTCAAGAAGTTTTTGCCAGTACTGGCCCACTTGAGGGATGCAAGCTCATACGGAAAGATAAGTCATCCTATGGATTTGTTGATTACTATGATCGCCGATCAGCTGCCCTTGCTATTGTTTCTCTCAACGGCAGGCATCTGTTTGGACAGCCAATTAAAGTTAATTGGGCCTATCAAAGTAGTCAGAGGGAGGATACTTCAGGTCATTTTAATATTTTTGTTGGTGATCTTAGCGCTGAGGTTACCGATGCTACATTGTTTGCATGCTTTTCTGTTTACCCCAGTTGTTCAGATGCAAGGGTTATGTGGGATCCAAAAAGTGGGCGCTCTAGGGGCTTTGGGTTTGTTTCATTCCGGAATCAGCAGGATGCCCAAAGTGCCATAAATGACTTAAATGGAAAGTGGCTTGCAAGTAGACAAATTCGGTGCAACTGGGCTACAAAAGGTGCTGCGTCAAATGATGATAAACAGAGTTCTGATTCTAAAAGTGTGGTCGAGCTGACAAATGGAACATCAGAAGATGGTCAGGAGAAGCCTAATGATGATGCTCCAGAGAACAATCCTCAGTATACCACAGTTTATGTTGGCAATCTGGCTCCTGAGGTTACTCAAGCTGAACTCCATCGTCATTTCCATGCCCTTGGTGCTGGAACTATAGAAGATGTTAGGGTGCAACGAGATAAAGGTTTTGGGTTTGTGAGATACAGTACACATTCTGAAGCAGCCGCAGCTATCCAGATGGGGAATGCTAGGTTTCTCTGTGGAAAACCAATAAAGTGTTCGTGGGGTAGCAAGCCTACTCCACCAGGAACCACCTCCAGCCCTCTCGCTCCACCAGCTGCAGCTTATATGCCAGGTTTTTCAGCCACTGACCTAGTAGCATATGAACGACAAATGGCATATAGTAAAATGGGTGGTCCACAAGCCCTCATGCTTCCCCAGGGTCAGCATGGTATGAAGGCACCCATGGGAATGGGTGCTGGAACTAGTCAGGCGATATATGACGGTGGCTACCAGAATGTAGCAACATCCCAGCAGCTCATGTACTACCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005764 GO:0005773 GO:0006355 GO:0006357 GO:0006915 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0008150 GO:0008219 GO:0008543 GO:0009719 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010494 GO:0010556 GO:0012501 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0035770 GO:0036464 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044344 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070848 GO:0070887 GO:0071310 GO:0071363 GO:0071495 GO:0071774 GO:0080090 GO:1903506 GO:1990904 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

418

Amino Acids

45.72

Weight (kDa)

7.1

Isoelectric Point (pI)

47.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	54 - 120	1.6e-12	RNA recognition motif
RRM_1	PF00076	139 - 209	8.4e-17	RNA recognition motif
RRM_1	PF00076	260 - 326	6.4e-14	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004118)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17370 AT1G17370 AT1G54080 AT3G14100
fragaria_vesca	FvH4_1g09080 FvH4_6g35150
malus_domestica	MD02G1096200.v1.1 MD09G1178500.v1.1 MD17G1148300.v1.1
prunus_persica	Prupe.3G037700_v2.0.a1 Prupe.3G037700_v2.0.a1 Prupe.7G194700_v2.0.a1 Prupe.7G194700_v2.0.a1
pyrus_communis	pycom02g07600 pycom15g19550 pycom17g14160
rosa_chinensis	RchiOBHm_Chr2g0095491 RchiOBHm_Chr2g0146411
rosa_laevigata	RLG00000016572 RLG00000020198
rosa_multiflora	Rmu_sc0006076.1_g000007
rosa_roxburghii	Rroxscaffold_2G00100120 Rroxscaffold_2G00146260
rosa_rugosa	Rorug02G0051600 Rorug02G0394100 Rorug02G0394200
rosa_samantha	Rh2AG450900 Rh2BG100900 Rh2BG463300 Rh2CG437700 Rh2DG472300
rosa_wichuraiana	Rw2G007550 Rw2G036800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1162
AccB7I	CCANNNNNTGG	1 cut(s)	521
AccI	GTMKAC	2 cut(s)	616, 770
AccIII	TCCGGA	1 cut(s)	555
AciI	CCGC	4 cut(s)	92, 95, 154, 927
AclWI	GGATC	2 cut(s)	506, 519
AcsI	RAATTY	1 cut(s)	621
AcuI	CTGAAG	2 cut(s)	384, 939
AfaI	GTAC	4 cut(s)	148, 223, 910, 1247
AfeI	AGCGCT	1 cut(s)	436
AfiI	CCNNNNNNNGG	3 cut(s)	235, 236, 521
AgsI	TTSAA	2 cut(s)	144, 206
AhlI	ACTAGT	1 cut(s)	1187
AjnI	CCWGG	5 cut(s)	130, 183, 1006, 1054, 1140
AjuI	GAANNNNNNNTTGG	2 cut(s)	964, 996
AluBI	AGCT	8 cut(s)	247, 305, 700, 815, 932, 1040, 1046, 1240
AluI	AGCT	8 cut(s)	247, 305, 700, 815, 932, 1040, 1046, 1240
AlwI	GGATC	2 cut(s)	506, 519
AlwNI	CAGNNNCTG	1 cut(s)	1070
Aor13HI	TCCGGA	1 cut(s)	555
Aor51HI	AGCGCT	1 cut(s)	436
AoxI	GGCC	2 cut(s)	226, 369
ApoI	RAATTY	1 cut(s)	621
AspLEI	GCGC	2 cut(s)	437, 528
AspS9I	GGNCC	3 cut(s)	227, 369, 1118
AsuHPI	GGTGA	1 cut(s)	437
AvaII	GGWCC	1 cut(s)	1118
AxyI	CCTNAGG	1 cut(s)	801
BamHI	GGATCC	1 cut(s)	511
BanI	GGYRCC	1 cut(s)	1162
BbvCI	CCTCAGC	1 cut(s)	438
BccI	CCATC	3 cut(s)	716, 831, 934
BceAI	ACGGC	1 cut(s)	346
BciT130I	CCWGG	5 cut(s)	132, 185, 1008, 1056, 1142
BciVI	GTATCC	1 cut(s)	388
BcuI	ACTAGT	1 cut(s)	1187
BfaI	CTAG	4 cut(s)	531, 951, 1076, 1188
BfmI	CTRYAG	2 cut(s)	855, 1041
BfoI	RGCGCY	2 cut(s)	438, 529
BfuI	GTATCC	1 cut(s)	388
BmcAI	AGTACT	1 cut(s)	223
Bme1390I	CCNGG	5 cut(s)	132, 185, 1008, 1056, 1142
Bme18I	GGWCC	1 cut(s)	1118
BmgT120I	GGNCC	3 cut(s)	227, 369, 1118
BmiI	GGNNCC	4 cut(s)	513, 798, 1012, 1164
BmrFI	CCNGG	5 cut(s)	132, 185, 1008, 1056, 1142
BmrI	ACTGGG	2 cut(s)	477, 643
BmsI	GCATC	7 cut(s)	42, 230, 346, 439, 484, 559, 736
BmuI	ACTGGG	2 cut(s)	477, 643
BpmI	CTGGAG	2 cut(s)	735, 1003
Bpu10I	CCTNAGC	1 cut(s)	438
BpuEI	CTTGAG	3 cut(s)	133, 254, 795
BsaJI	CCNNGG	6 cut(s)	131, 183, 841, 1140, 1141, 1167
BsaWI	WCCGGW	1 cut(s)	555
Bsc4I	CCNNNNNNNGG	3 cut(s)	235, 236, 521
Bse1I	ACTGG	5 cut(s)	219, 229, 483, 638, 1252
Bse21I	CCTNAGG	1 cut(s)	801
BseAI	TCCGGA	1 cut(s)	555
BseBI	CCWGG	5 cut(s)	132, 185, 1008, 1056, 1142
BseDI	CCNNGG	6 cut(s)	131, 183, 841, 1140, 1141, 1167
BseGI	GGATG	5 cut(s)	178, 245, 266, 574, 1229
BseLI	CCNNNNNNNGG	3 cut(s)	235, 236, 521
BseMII	CTCAG	3 cut(s)	429, 779, 792
BseNI	ACTGG	5 cut(s)	219, 229, 483, 638, 1252
BseYI	CCCAGC	1 cut(s)	1233
BshFI	GGCC	2 cut(s)	228, 371
BshNI	GGYRCC	1 cut(s)	1162
BsiSI	CCGG	1 cut(s)	556
BslI	CCNNNNNNNGG	3 cut(s)	235, 236, 521
BsmI	GAATGC	1 cut(s)	952
BsnI	GGCC	2 cut(s)	228, 371
Bsp13I	TCCGGA	1 cut(s)	555
Bsp143I	GATC	4 cut(s)	292, 299, 427, 511
Bsp19I	CCATGG	1 cut(s)	1167
BspACI	CCGC	4 cut(s)	92, 95, 154, 927
BspANI	GGCC	2 cut(s)	228, 371
BspCNI	CTCAG	3 cut(s)	430, 778, 793
BspEI	TCCGGA	1 cut(s)	555
BspLI	GGNNCC	4 cut(s)	513, 798, 1012, 1164
BspMAI	CTGCAG	1 cut(s)	1045
BspPI	GGATC	2 cut(s)	506, 519
BspT107I	GGYRCC	1 cut(s)	1162
BsrI	ACTGG	5 cut(s)	219, 229, 483, 638, 1252
BssECI	CCNNGG	6 cut(s)	131, 183, 841, 1140, 1141, 1167
BssMI	GATC	4 cut(s)	292, 299, 427, 511
BssNAI	GTATAC	1 cut(s)	771
BssT1I	CCWWGG	2 cut(s)	841, 1167
Bst1107I	GTATAC	1 cut(s)	771
Bst2UI	CCWGG	5 cut(s)	132, 185, 1008, 1056, 1142
Bst4CI	ACNGT	3 cut(s)	778, 908, 1208
BstC8I	GCNNGC	5 cut(s)	245, 335, 466, 609, 995
BstDEI	CTNAG	5 cut(s)	85, 431, 438, 765, 801
BstDSI	CCRYGG	1 cut(s)	1167
BstEII	GGTNACC	1 cut(s)	442
BstF5I	GGATG	5 cut(s)	178, 245, 266, 574, 1229
BstH2I	RGCGCY	2 cut(s)	438, 529
BstHHI	GCGC	2 cut(s)	437, 528
BstKTI	GATC	4 cut(s)	295, 302, 430, 514
BstMBI	GATC	4 cut(s)	292, 299, 427, 511
BstNI	CCWGG	5 cut(s)	132, 185, 1008, 1056, 1142
BstNSI	RCATGY	2 cut(s)	153, 468
BstPI	GGTNACC	1 cut(s)	442
BstSCI	CCNGG	5 cut(s)	130, 183, 1006, 1054, 1140
BstSFI	CTRYAG	2 cut(s)	855, 1041
BstX2I	RGATCY	1 cut(s)	511
BstXI	CCANNNNNNTGG	2 cut(s)	842, 1174
BstYI	RGATCY	1 cut(s)	511
BstZ17I	GTATAC	1 cut(s)	771
Bsu36I	CCTNAGG	1 cut(s)	801
BsuI	GTATCC	1 cut(s)	388
BsuRI	GGCC	2 cut(s)	228, 371
BtgI	CCRYGG	1 cut(s)	1167
BtsCI	GGATG	5 cut(s)	178, 245, 266, 574, 1229
BtsI	GCAGTG	1 cut(s)	163
BtsIMutI	CAGTG	2 cut(s)	163, 1068
Cac8I	GCNNGC	5 cut(s)	245, 335, 466, 609, 995
CaiI	CAGNNNCTG	1 cut(s)	1070
CfoI	GCGC	2 cut(s)	437, 528
Cfr13I	GGNCC	3 cut(s)	227, 369, 1118
CseI	GACGC	1 cut(s)	642
Csp6I	GTAC	4 cut(s)	147, 222, 909, 1246
CviAII	CATG	8 cut(s)	49, 150, 465, 836, 1132, 1151, 1168, 1243
CviQI	GTAC	4 cut(s)	147, 222, 909, 1246
DdeI	CTNAG	5 cut(s)	85, 431, 438, 765, 801
DpnI	GATC	4 cut(s)	294, 301, 429, 513
DpnII	GATC	4 cut(s)	292, 299, 427, 511
Eco130I	CCWWGG	2 cut(s)	841, 1167
Eco47I	GGWCC	1 cut(s)	1118
Eco47III	AGCGCT	1 cut(s)	436
Eco57I	CTGAAG	2 cut(s)	384, 939
Eco81I	CCTNAGG	1 cut(s)	801
Eco91I	GGTNACC	1 cut(s)	442
EcoO65I	GGTNACC	1 cut(s)	442
EcoRII	CCWGG	5 cut(s)	130, 183, 1006, 1054, 1140
EcoT14I	CCWWGG	2 cut(s)	841, 1167
ErhI	CCWWGG	2 cut(s)	841, 1167
FaeI	CATG	8 cut(s)	52, 153, 468, 839, 1135, 1154, 1171, 1246
FatI	CATG	8 cut(s)	48, 149, 464, 835, 1131, 1150, 1167, 1242
FauI	CCCGC	1 cut(s)	99
FauNDI	CATATG	1 cut(s)	1084
FblI	GTMKAC	2 cut(s)	616, 770
FokI	GGATG	5 cut(s)	165, 252, 253, 581, 1216
FspBI	CTAG	4 cut(s)	531, 951, 1076, 1188
GlaI	GCGC	2 cut(s)	436, 527
GsaI	CCCAGC	1 cut(s)	1237
GsuI	CTGGAG	2 cut(s)	735, 1003
HaeII	RGCGCY	2 cut(s)	438, 529
HaeIII	GGCC	2 cut(s)	228, 371
HapII	CCGG	1 cut(s)	556
HgaI	GACGC	1 cut(s)	642
HhaI	GCGC	2 cut(s)	437, 528
Hin1II	CATG	8 cut(s)	52, 153, 468, 839, 1135, 1154, 1171, 1246
Hin6I	GCGC	2 cut(s)	435, 526
HinP1I	GCGC	2 cut(s)	435, 526
HinfI	GANTC	3 cut(s)	140, 559, 680
HpaII	CCGG	1 cut(s)	556
HphI	GGTGA	1 cut(s)	437
Hpy166II	GTNNAC	5 cut(s)	478, 617, 771, 911, 1121
Hpy188I	TCNGA	5 cut(s)	387, 493, 679, 718, 919
Hpy188III	TCNNGA	7 cut(s)	112, 206, 556, 728, 752, 800, 937
Hpy8I	GTNNAC	5 cut(s)	478, 617, 771, 911, 1121
HpyAV	CCTTC	2 cut(s)	209, 1153
HpyCH4III	ACNGT	3 cut(s)	778, 908, 1208
HpyCH4V	TGCA	9 cut(s)	4, 55, 243, 464, 497, 611, 630, 874, 1043
HpyF3I	CTNAG	5 cut(s)	85, 431, 438, 765, 801
Hsp92II	CATG	8 cut(s)	52, 153, 468, 839, 1135, 1154, 1171, 1246
HspAI	GCGC	2 cut(s)	435, 526
Kpn2I	TCCGGA	1 cut(s)	555
Kzo9I	GATC	4 cut(s)	292, 299, 427, 511
LmnI	GCTCC	3 cut(s)	754, 802, 1036
LweI	GCATC	7 cut(s)	42, 230, 346, 439, 484, 559, 736
MaeI	CTAG	4 cut(s)	531, 951, 1076, 1188
MaeIII	GTNAC	3 cut(s)	187, 442, 805
MalI	GATC	4 cut(s)	294, 301, 429, 513
MboI	GATC	4 cut(s)	292, 299, 427, 511
MboII	GAAGA	3 cut(s)	194, 731, 872
MflI	RGATCY	1 cut(s)	511
MluCI	AATT	3 cut(s)	354, 364, 621
MmeI	TCCRAC	1 cut(s)	148
MroI	TCCGGA	1 cut(s)	555
MseI	TTAA	5 cut(s)	24, 357, 363, 411, 593
MslI	CAYNNNNRTG	2 cut(s)	834, 1172
MspA1I	CMGCKG	2 cut(s)	305, 1040
MspI	CCGG	1 cut(s)	556
MspR9I	CCNGG	5 cut(s)	132, 185, 1008, 1056, 1142
Mva1269I	GAATGC	1 cut(s)	952
MvaI	CCWGG	5 cut(s)	132, 185, 1008, 1056, 1142
NcoI	CCATGG	1 cut(s)	1167
NdeI	CATATG	1 cut(s)	1084
NdeII	GATC	4 cut(s)	292, 299, 427, 511
NlaIII	CATG	8 cut(s)	52, 153, 468, 839, 1135, 1154, 1171, 1246
NlaIV	GGNNCC	4 cut(s)	513, 798, 1012, 1164
NspI	RCATGY	2 cut(s)	153, 468
PaeI	GCATGC	1 cut(s)	468
PasI	CCCWGGG	1 cut(s)	1141
PctI	GAATGC	1 cut(s)	952
PfeI	GAWTC	3 cut(s)	140, 559, 680
PflMI	CCANNNNNTGG	1 cut(s)	521
Psp6I	CCWGG	5 cut(s)	130, 183, 1006, 1054, 1140
PspEI	GGTNACC	1 cut(s)	442
PspFI	CCCAGC	1 cut(s)	1233
PspGI	CCWGG	5 cut(s)	130, 183, 1006, 1054, 1140
PspN4I	GGNNCC	4 cut(s)	513, 798, 1012, 1164
PspPI	GGNCC	3 cut(s)	227, 369, 1118
PstI	CTGCAG	1 cut(s)	1045
PstNI	CAGNNNCTG	1 cut(s)	1070
PsuI	RGATCY	1 cut(s)	511
PvuII	CAGCTG	2 cut(s)	305, 1040
RsaI	GTAC	4 cut(s)	148, 223, 910, 1247
RsaNI	GTAC	4 cut(s)	147, 222, 909, 1246
RseI	CAYNNNNRTG	2 cut(s)	834, 1172
SaqAI	TTAA	5 cut(s)	24, 357, 363, 411, 593
Sau3AI	GATC	4 cut(s)	292, 299, 427, 511
Sau96I	GGNCC	3 cut(s)	227, 369, 1118
ScaI	AGTACT	1 cut(s)	223
ScrFI	CCNGG	5 cut(s)	132, 185, 1008, 1056, 1142
SfaNI	GCATC	7 cut(s)	42, 230, 346, 439, 484, 559, 736
SfcI	CTRYAG	2 cut(s)	855, 1041
SinI	GGWCC	1 cut(s)	1118
SmiMI	CAYNNNNRTG	2 cut(s)	834, 1172
SmlI	CTYRAG	3 cut(s)	112, 233, 810
SmoI	CTYRAG	3 cut(s)	112, 233, 810
SpeI	ACTAGT	1 cut(s)	1187
SphI	GCATGC	1 cut(s)	468
Sse9I	AATT	3 cut(s)	354, 364, 621
SsiI	CCGC	4 cut(s)	92, 95, 154, 927
SspI	AATATT	2 cut(s)	175, 415
SspMI	CTAG	4 cut(s)	531, 951, 1076, 1188
StyD4I	CCNGG	5 cut(s)	130, 183, 1006, 1054, 1140
StyI	CCWWGG	2 cut(s)	841, 1167
TaaI	ACNGT	3 cut(s)	778, 908, 1208
TaqI	TCGA	1 cut(s)	696
TasI	AATT	3 cut(s)	354, 364, 621
TatI	WGTACW	4 cut(s)	146, 221, 908, 1245
TauI	GCSGC	3 cut(s)	97, 156, 929
TfiI	GAWTC	3 cut(s)	140, 559, 680
Tru1I	TTAA	5 cut(s)	24, 357, 363, 411, 593
Tru9I	TTAA	5 cut(s)	24, 357, 363, 411, 593
TscAI	CASTG	2 cut(s)	163, 1075
TspDTI	ATGAA	4 cut(s)	167, 540, 1101, 1172
TspGWI	ACGGA	1 cut(s)	268
TspRI	CASTG	2 cut(s)	163, 1075
Van91I	CCANNNNNTGG	1 cut(s)	521
VpaK11BI	GGWCC	1 cut(s)	1118
XapI	RAATTY	1 cut(s)	621
XceI	RCATGY	2 cut(s)	153, 468
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1148
XmiI	GTMKAC	2 cut(s)	616, 770
XspI	CTAG	4 cut(s)	531, 951, 1076, 1188
ZrmI	AGTACT	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.