Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0004118

Physical Location & Seq

Genomic Coordinates Forward (+)

4810382 .. 4814965

Gene Structure 4584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g09080.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGCAACAGCAGCAGCAACAAGCCATGATGCAGCAGTCGCTTTATCAACACCACCCTGCTCTCTTAGCCCCGCCTCAGATAGAGCCTATCTTGAGTGGAAATCTGCCTCCCGGGTTTGATTCAAGTACATGCCGCAGTGTGTATGTTGGAAATATTCATCCACAGGTTACTGAAACCCTTCTTCAAGAAGTTTTTGCCAGTACTGGCCCACTTGAGGGATGCAAGCTCATAAGGAAAGATAAGTCATCCTATGGATTTGTTGATTACTATGATCGCCGATCAGCTGCCCTTGCTATTGTTTCTCTCAATGGCAGGCATCTGTTTGGACAGCCAATTAAAGTTAATTGGGCATATCAAAGTAGTCAGAGGGAGGATACTTCAGGTCATTTTAATATTTTTGTTGGTGATCTTAGCGCTGAGGTTACCGATGCTACATTGTTTGCATGCTTTTCTGCTTACCCCAGTTGCTCAGATGCAAGGGTTATGTGGGATCCAAAGAGTGGGCGCTCAAGGGGTTTTGGATTTGTTTCGTTCCGGAATCAGCAGGATGCTCAAAGTGCTATAAATGACTTAAATGGAAAGTGGCTTGCAAGTAGGCAAATTCGGTGCAACTGGGCTACGAAAGGTGCTACTTCAAATGATGATAAACAGAGTTCTGATTCTAAAAGTGTTGTAGAGCTGACAAATGGAACATCAGAAGATGGTCAGGAGAAGCCTAATGAAGATGCTCCAGAGAATAATCCTCAGTATACCACCGTTTATGTTGGCAATCTGGCTCCTGAGGTTACTCAAACTGAACTCCATCGTCATTTCCATCTCCTTGGTGCTGGAACTATTGAAGATGTTAGGGTGCAACGTGATAAAGGTTTTGGGTTTGTGAGATACAGTACACATTCTGAAGCAGCTGCAGCTATCCAGATGGGGAATGCTAGGTTTTTGTGTGGAAAAGCAATAAAGTGTTCATGGGGTAGCAAGCCTACTCCACCAGGAACTGTCTCCAGCCCTCTAGCTCCACCAGCTGCAGCTTATATGCCGGGTTTTTCAGCGGCGGACCTTGCAGCATATGAACGACAAATGGCATATAGTAAAATGGGCGGTCCACAAGGCCTCATGCTTCCCCAGGGTCAGCATGGTCTGAATGCTGGAGCTAGTCAGGCGATATACGACGGTGGCTACCAGAATATAGCAACATCCCAGCAGCTCATGTACTACCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005764 GO:0005773 GO:0006355 GO:0006357 GO:0006915 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0008150 GO:0008219 GO:0008543 GO:0009719 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010494 GO:0010556 GO:0012501 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0035770 GO:0036464 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044344 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070848 GO:0070887 GO:0071310 GO:0071363 GO:0071495 GO:0071774 GO:0080090 GO:1903506 GO:1990904 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

406

Amino Acids

44.23

Weight (kDa)

6.36

Isoelectric Point (pI)

49.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	47 - 113	6e-13	RNA recognition motif
RRM_1	PF00076	132 - 202	1.9e-17	RNA recognition motif
RRM_1	PF00076	253 - 319	3.6e-13	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004118)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17370 AT1G17370 AT1G54080 AT3G14100
fragaria_vesca	FvH4_1g09080 FvH4_6g35150
malus_domestica	MD02G1096200.v1.1 MD09G1178500.v1.1 MD17G1148300.v1.1
prunus_persica	Prupe.3G037700_v2.0.a1 Prupe.3G037700_v2.0.a1 Prupe.7G194700_v2.0.a1 Prupe.7G194700_v2.0.a1
pyrus_communis	pycom02g07600 pycom15g19550 pycom17g14160
rosa_chinensis	RchiOBHm_Chr2g0095491 RchiOBHm_Chr2g0146411
rosa_laevigata	RLG00000016572 RLG00000020198
rosa_multiflora	Rmu_sc0006076.1_g000007
rosa_roxburghii	Rroxscaffold_2G00100120 Rroxscaffold_2G00146260
rosa_rugosa	Rorug02G0051600 Rorug02G0394100 Rorug02G0394200
rosa_samantha	Rh2AG450900 Rh2BG100900 Rh2BG463300 Rh2CG437700 Rh2DG472300
rosa_wichuraiana	Rw2G007550 Rw2G036800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	500
AccI	GTMKAC	1 cut(s)	749
AccIII	TCCGGA	1 cut(s)	534
AciI	CCGC	5 cut(s)	71, 133, 1046, 1049, 1095
AclWI	GGATC	2 cut(s)	485, 498
AcsI	RAATTY	1 cut(s)	600
AcuI	CTGAAG	2 cut(s)	363, 918
AfaI	GTAC	4 cut(s)	127, 202, 889, 1208
AfeI	AGCGCT	1 cut(s)	415
AfiI	CCNNNNNNNGG	3 cut(s)	214, 215, 500
AgsI	TTSAA	4 cut(s)	123, 185, 636, 839
AjnI	CCWGG	2 cut(s)	985, 1119
Alw26I	GTCTC	1 cut(s)	1000
AlwI	GGATC	2 cut(s)	485, 498
AlwNI	CAGNNNCTG	1 cut(s)	992
Ama87I	CYCGRG	1 cut(s)	110
Aor13HI	TCCGGA	1 cut(s)	534
Aor51HI	AGCGCT	1 cut(s)	415
AoxI	GGCC	2 cut(s)	205, 1105
ApoI	RAATTY	1 cut(s)	600
Asp700I	GAANNNNTTC	1 cut(s)	177
AspLEI	GCGC	2 cut(s)	416, 507
AspS9I	GGNCC	3 cut(s)	206, 1051, 1097
AsuC2I	CCSGG	3 cut(s)	111, 112, 1035
AsuHPI	GGTGA	1 cut(s)	416
AvaI	CYCGRG	1 cut(s)	110
AvaII	GGWCC	2 cut(s)	1051, 1097
AxyI	CCTNAGG	1 cut(s)	780
BamHI	GGATCC	1 cut(s)	490
BbvCI	CCTCAGC	1 cut(s)	417
BccI	CCATC	4 cut(s)	695, 810, 822, 913
BciT130I	CCWGG	2 cut(s)	987, 1121
BciVI	GTATCC	1 cut(s)	367
BcnI	CCSGG	3 cut(s)	111, 112, 1035
BcoDI	GTCTC	1 cut(s)	1000
BfaI	CTAG	3 cut(s)	930, 1007, 1149
BfmI	CTRYAG	2 cut(s)	906, 1020
BfoI	RGCGCY	2 cut(s)	417, 508
BfuI	GTATCC	1 cut(s)	367
BmcAI	AGTACT	1 cut(s)	202
Bme1390I	CCNGG	5 cut(s)	111, 112, 987, 1035, 1121
Bme18I	GGWCC	2 cut(s)	1051, 1097
BmeT110I	CYCGRG	1 cut(s)	110
BmgT120I	GGNCC	3 cut(s)	206, 1051, 1097
BmiI	GGNNCC	2 cut(s)	492, 777
BmrFI	CCNGG	5 cut(s)	111, 112, 987, 1035, 1121
BmrI	ACTGGG	2 cut(s)	456, 622
BmsI	GCATC	7 cut(s)	18, 209, 325, 418, 463, 538, 715
BmuI	ACTGGG	2 cut(s)	456, 622
BpmI	CTGGAG	3 cut(s)	714, 982, 1164
Bpu10I	CCTNAGC	1 cut(s)	417
BpuEI	CTTGAG	3 cut(s)	112, 233, 493
BpuMI	CCSGG	3 cut(s)	111, 112, 1035
BsaJI	CCNNGG	4 cut(s)	110, 820, 1119, 1120
BsaWI	WCCGGW	1 cut(s)	534
Bsc4I	CCNNNNNNNGG	3 cut(s)	214, 215, 500
Bse1I	ACTGG	5 cut(s)	198, 208, 462, 617, 1213
Bse21I	CCTNAGG	1 cut(s)	780
BseAI	TCCGGA	1 cut(s)	534
BseBI	CCWGG	2 cut(s)	987, 1121
BseDI	CCNNGG	4 cut(s)	110, 820, 1119, 1120
BseGI	GGATG	5 cut(s)	157, 224, 245, 553, 1190
BseLI	CCNNNNNNNGG	3 cut(s)	214, 215, 500
BseMII	CTCAG	5 cut(s)	89, 408, 483, 758, 771
BseNI	ACTGG	5 cut(s)	198, 208, 462, 617, 1213
BseYI	CCCAGC	1 cut(s)	1194
BshFI	GGCC	2 cut(s)	207, 1107
BsiHKCI	CYCGRG	1 cut(s)	110
BsiSI	CCGG	3 cut(s)	111, 535, 1034
BslI	CCNNNNNNNGG	3 cut(s)	214, 215, 500
BsmAI	GTCTC	1 cut(s)	1000
BsmI	GAATGC	2 cut(s)	931, 1144
BsnI	GGCC	2 cut(s)	207, 1107
BsoBI	CYCGRG	1 cut(s)	110
Bsp13I	TCCGGA	1 cut(s)	534
Bsp143I	GATC	4 cut(s)	271, 278, 406, 490
BspACI	CCGC	5 cut(s)	71, 133, 1046, 1049, 1095
BspANI	GGCC	2 cut(s)	207, 1107
BspCNI	CTCAG	5 cut(s)	88, 409, 482, 757, 772
BspEI	TCCGGA	1 cut(s)	534
BspLI	GGNNCC	2 cut(s)	492, 777
BspMAI	CTGCAG	2 cut(s)	910, 1024
BspPI	GGATC	2 cut(s)	485, 498
BsrI	ACTGG	5 cut(s)	198, 208, 462, 617, 1213
BssECI	CCNNGG	4 cut(s)	110, 820, 1119, 1120
BssMI	GATC	4 cut(s)	271, 278, 406, 490
BssNAI	GTATAC	1 cut(s)	750
BssT1I	CCWWGG	1 cut(s)	820
Bst1107I	GTATAC	1 cut(s)	750
Bst2UI	CCWGG	2 cut(s)	987, 1121
Bst4CI	ACNGT	4 cut(s)	757, 887, 994, 1169
BstC8I	GCNNGC	5 cut(s)	224, 314, 445, 588, 974
BstDEI	CTNAG	7 cut(s)	64, 75, 410, 417, 469, 744, 780
BstEII	GGTNACC	1 cut(s)	421
BstF5I	GGATG	5 cut(s)	157, 224, 245, 553, 1190
BstH2I	RGCGCY	2 cut(s)	417, 508
BstHHI	GCGC	2 cut(s)	416, 507
BstKTI	GATC	4 cut(s)	274, 281, 409, 493
BstMAI	GTCTC	1 cut(s)	1000
BstMBI	GATC	4 cut(s)	271, 278, 406, 490
BstMWI	GCNNNNNNNGC	9 cut(s)	10, 37, 65, 290, 557, 908, 1016, 1055, 1154
BstNI	CCWGG	2 cut(s)	987, 1121
BstNSI	RCATGY	2 cut(s)	132, 447
BstPI	GGTNACC	1 cut(s)	421
BstSCI	CCNGG	5 cut(s)	109, 110, 985, 1033, 1119
BstSFI	CTRYAG	2 cut(s)	906, 1020
BstX2I	RGATCY	1 cut(s)	490
BstXI	CCANNNNNNTGG	1 cut(s)	821
BstYI	RGATCY	1 cut(s)	490
BstZ17I	GTATAC	1 cut(s)	750
Bsu36I	CCTNAGG	1 cut(s)	780
BsuI	GTATCC	1 cut(s)	367
BsuRI	GGCC	2 cut(s)	207, 1107
BtsCI	GGATG	5 cut(s)	157, 224, 245, 553, 1190
BtsI	GCAGTG	1 cut(s)	142
BtsIMutI	CAGTG	1 cut(s)	142
Cac8I	GCNNGC	5 cut(s)	224, 314, 445, 588, 974
CaiI	CAGNNNCTG	1 cut(s)	992
CfoI	GCGC	2 cut(s)	416, 507
Cfr13I	GGNCC	3 cut(s)	206, 1051, 1097
Cfr9I	CCCGGG	1 cut(s)	110
Csp6I	GTAC	4 cut(s)	126, 201, 888, 1207
CviAII	CATG	7 cut(s)	25, 129, 444, 963, 1111, 1130, 1204
CviQI	GTAC	4 cut(s)	126, 201, 888, 1207
DdeI	CTNAG	7 cut(s)	64, 75, 410, 417, 469, 744, 780
DpnI	GATC	4 cut(s)	273, 280, 408, 492
DpnII	GATC	4 cut(s)	271, 278, 406, 490
EciI	GGCGGA	1 cut(s)	1064
Eco130I	CCWWGG	1 cut(s)	820
Eco147I	AGGCCT	1 cut(s)	1107
Eco47I	GGWCC	2 cut(s)	1051, 1097
Eco47III	AGCGCT	1 cut(s)	415
Eco57I	CTGAAG	2 cut(s)	363, 918
Eco81I	CCTNAGG	1 cut(s)	780
Eco88I	CYCGRG	1 cut(s)	110
Eco91I	GGTNACC	1 cut(s)	421
EcoO65I	GGTNACC	1 cut(s)	421
EcoRII	CCWGG	2 cut(s)	985, 1119
EcoT14I	CCWWGG	1 cut(s)	820
ErhI	CCWWGG	1 cut(s)	820
FaeI	CATG	7 cut(s)	28, 132, 447, 966, 1114, 1133, 1207
FatI	CATG	7 cut(s)	24, 128, 443, 962, 1110, 1129, 1203
FauI	CCCGC	1 cut(s)	78
FauNDI	CATATG	1 cut(s)	1063
FblI	GTMKAC	1 cut(s)	749
FokI	GGATG	5 cut(s)	144, 231, 232, 560, 1177
FspBI	CTAG	3 cut(s)	930, 1007, 1149
GlaI	GCGC	2 cut(s)	415, 506
GsaI	CCCAGC	1 cut(s)	1198
GsuI	CTGGAG	3 cut(s)	714, 982, 1164
HaeII	RGCGCY	2 cut(s)	417, 508
HaeIII	GGCC	2 cut(s)	207, 1107
HapII	CCGG	3 cut(s)	111, 535, 1034
HhaI	GCGC	2 cut(s)	416, 507
Hin1II	CATG	7 cut(s)	28, 132, 447, 966, 1114, 1133, 1207
Hin6I	GCGC	2 cut(s)	414, 505
HinP1I	GCGC	2 cut(s)	414, 505
HinfI	GANTC	3 cut(s)	119, 538, 659
HpaII	CCGG	3 cut(s)	111, 535, 1034
HphI	GGTGA	1 cut(s)	416
Hpy166II	GTNNAC	3 cut(s)	750, 890, 1100
Hpy188I	TCNGA	7 cut(s)	78, 366, 472, 658, 697, 898, 1137
Hpy188III	TCNNGA	7 cut(s)	91, 185, 535, 707, 731, 779, 916
Hpy8I	GTNNAC	3 cut(s)	750, 890, 1100
Hpy99I	CGWCG	1 cut(s)	1169
HpyAV	CCTTC	1 cut(s)	188
HpyCH4III	ACNGT	4 cut(s)	757, 887, 994, 1169
HpyCH4IV	ACGT	1 cut(s)	856
HpyF10VI	GCNNNNNNNGC	9 cut(s)	10, 37, 65, 290, 557, 908, 1016, 1055, 1154
HpyF3I	CTNAG	7 cut(s)	64, 75, 410, 417, 469, 744, 780
HpySE526I	ACGT	1 cut(s)	856
Hsp92II	CATG	7 cut(s)	28, 132, 447, 966, 1114, 1133, 1207
HspAI	GCGC	2 cut(s)	414, 505
Kpn2I	TCCGGA	1 cut(s)	534
Kzo9I	GATC	4 cut(s)	271, 278, 406, 490
LmnI	GCTCC	4 cut(s)	733, 781, 1015, 1145
LweI	GCATC	7 cut(s)	18, 209, 325, 418, 463, 538, 715
MaeI	CTAG	3 cut(s)	930, 1007, 1149
MaeII	ACGT	1 cut(s)	856
MaeIII	GTNAC	3 cut(s)	166, 421, 784
MalI	GATC	4 cut(s)	273, 280, 408, 492
MboI	GATC	4 cut(s)	271, 278, 406, 490
MboII	GAAGA	4 cut(s)	173, 710, 734, 851
MflI	RGATCY	1 cut(s)	490
MluCI	AATT	3 cut(s)	333, 343, 600
MmeI	TCCRAC	1 cut(s)	127
MroI	TCCGGA	1 cut(s)	534
MroXI	GAANNNNTTC	1 cut(s)	177
MseI	TTAA	4 cut(s)	336, 342, 390, 572
MspA1I	CMGCKG	4 cut(s)	284, 905, 1019, 1046
MspI	CCGG	3 cut(s)	111, 535, 1034
MspR9I	CCNGG	5 cut(s)	111, 112, 987, 1035, 1121
Mva1269I	GAATGC	2 cut(s)	931, 1144
MvaI	CCWGG	2 cut(s)	987, 1121
MwoI	GCNNNNNNNGC	9 cut(s)	10, 37, 65, 290, 557, 908, 1016, 1055, 1154
NciI	CCSGG	3 cut(s)	111, 112, 1035
NdeI	CATATG	1 cut(s)	1063
NdeII	GATC	4 cut(s)	271, 278, 406, 490
NlaIII	CATG	7 cut(s)	28, 132, 447, 966, 1114, 1133, 1207
NlaIV	GGNNCC	2 cut(s)	492, 777
NspI	RCATGY	2 cut(s)	132, 447
PaeI	GCATGC	1 cut(s)	447
PasI	CCCWGGG	1 cut(s)	1120
PceI	AGGCCT	1 cut(s)	1107
PctI	GAATGC	2 cut(s)	931, 1144
PdmI	GAANNNNTTC	1 cut(s)	177
PfeI	GAWTC	3 cut(s)	119, 538, 659
PflMI	CCANNNNNTGG	1 cut(s)	500
Psp6I	CCWGG	2 cut(s)	985, 1119
PspEI	GGTNACC	1 cut(s)	421
PspFI	CCCAGC	1 cut(s)	1194
PspGI	CCWGG	2 cut(s)	985, 1119
PspN4I	GGNNCC	2 cut(s)	492, 777
PspPI	GGNCC	3 cut(s)	206, 1051, 1097
PstI	CTGCAG	2 cut(s)	910, 1024
PstNI	CAGNNNCTG	1 cut(s)	992
PsuI	RGATCY	1 cut(s)	490
PvuII	CAGCTG	3 cut(s)	284, 905, 1019
RsaI	GTAC	4 cut(s)	127, 202, 889, 1208
RsaNI	GTAC	4 cut(s)	126, 201, 888, 1207
SaqAI	TTAA	4 cut(s)	336, 342, 390, 572
Sau3AI	GATC	4 cut(s)	271, 278, 406, 490
Sau96I	GGNCC	3 cut(s)	206, 1051, 1097
ScaI	AGTACT	1 cut(s)	202
ScrFI	CCNGG	5 cut(s)	111, 112, 987, 1035, 1121
SfaNI	GCATC	7 cut(s)	18, 209, 325, 418, 463, 538, 715
SfcI	CTRYAG	2 cut(s)	906, 1020
SinI	GGWCC	2 cut(s)	1051, 1097
SmaI	CCCGGG	1 cut(s)	112
SmlI	CTYRAG	3 cut(s)	91, 212, 508
SmoI	CTYRAG	3 cut(s)	91, 212, 508
SphI	GCATGC	1 cut(s)	447
Sse9I	AATT	3 cut(s)	333, 343, 600
SseBI	AGGCCT	1 cut(s)	1107
SsiI	CCGC	5 cut(s)	71, 133, 1046, 1049, 1095
SspI	AATATT	2 cut(s)	154, 394
SspMI	CTAG	3 cut(s)	930, 1007, 1149
StuI	AGGCCT	1 cut(s)	1107
StyD4I	CCNGG	5 cut(s)	109, 110, 985, 1033, 1119
StyI	CCWWGG	1 cut(s)	820
TaaI	ACNGT	4 cut(s)	757, 887, 994, 1169
TaiI	ACGT	1 cut(s)	859
TasI	AATT	3 cut(s)	333, 343, 600
TatI	WGTACW	4 cut(s)	125, 200, 887, 1206
TauI	GCSGC	2 cut(s)	135, 1049
TfiI	GAWTC	3 cut(s)	119, 538, 659
Tru1I	TTAA	4 cut(s)	336, 342, 390, 572
Tru9I	TTAA	4 cut(s)	336, 342, 390, 572
TscAI	CASTG	1 cut(s)	142
TspDTI	ATGAA	4 cut(s)	146, 735, 951, 1080
TspMI	CCCGGG	1 cut(s)	110
TspRI	CASTG	1 cut(s)	142
Van91I	CCANNNNNTGG	1 cut(s)	500
VpaK11BI	GGWCC	2 cut(s)	1051, 1097
XapI	RAATTY	1 cut(s)	600
XceI	RCATGY	2 cut(s)	132, 447
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1127
XmaI	CCCGGG	1 cut(s)	110
XmiI	GTMKAC	1 cut(s)	749
XmnI	GAANNNNTTC	1 cut(s)	177
XspI	CTAG	3 cut(s)	930, 1007, 1149
ZrmI	AGTACT	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.