pycom02g07600

Oligouridylate-binding protein 1-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Forward (+)
5326833 .. 5331198
4366 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g07600.1

Sequence Viewer

Length: 1242 bp
ATGCAACAGCAGAGGTTCAAGCAGCAAGCCATGATGCAGCAGTCGCTATACCAACACCCTGCCCTCTTAGGCGCCCCTCAGATAGAGCCTATCTTGAGTGGAAATCTGCCTCCTGGGTTTGATTCGAGTACTTGCCGCAGTGTTTATGTCGGAAATATTCACCCACAAGTTACCGAACCCCTTATGCAAGAAGTTTTTGCCAGTACTGGTCCACTTGAAGGATGCAAGCTCATAAGGAAGGATAAGTCATCCTATGGATTTGTTGACTACTTCGATCGTAGGTCAGCTGCTCTTGCTATTGTGACCCTTAATGGCAGGCATCTATTTGGGCAGCCGATTAAAGTTAATTGGGCATATGCAAGTAGTCAGAGAGAGGATACATCAGGTCATTTTAATATTTTTGTTGGTGATCTTAGCCCTGAGGTTACTGATGCTACACTGTTTGCATGCTTTTCTGGTTATTCCAGTTGTTCAGATGCTAGAGTTATGTGGATCGATCAGAAAACTGGGCGTTCAAGGGGCTTTGGGTTTGTTTCTTTCCGAAATCAGCAGGAGGCCCAAAGTGCAATTAATGACTTAAATGGAAAGTGGCTTGGAAGTAGACAGATTCGGTGCAATTGGGCCACAAAAGGTGCTACTTCCAGTGATGACAAGCAGAGTTCTGATTCTAAAAGTGTTGTAGAGCTGACGAATGGAACATCAGAAGATGGTCAGGAGAAGCCTAATGAAGATGCTCCAGAGAACAATCCTCAGTATACTACAGTTTATGTGGGCAATCTATCTCCTGAGGTTACTTCAGTTGACCTCCATCGTCATTTCCATGGCCTTGGTGCCGGAGTTATTGAAGATGTTCGGGTGCAGCGAGATAAAGGTTTTGGGTTTGTGAGATACAGTACCCATTCTGAAGCAGCTGTAGCTATCCAGTTGGGGAATGCTAGGTTTCTGTGTGGCAAACCAATTAAGTGTTCATGGGGCAGCAAGCCTACTCCACCAGGGACAAGCTCGACCCCCCTACCGCCACCAGCTGCAGTTCACATTCCAGGTTTCTCAGCCGCCGACCTTGTGGCCTATGAAAGACAAATGGCATTGAGCAAACTGGGTGGTGCCCAAGCCCTCATGCTTCCGCAGGGTCAGCATGCACTGAAGGCAGCTATGGGGATGGGTGCTGGAGCTAGTCAGGCCATATACGACGGTGGTTACCAGAATTTAGCAACAACTCAGCAACTCATGTACTACCAGTAA

Protein Analysis

414

Amino Acids

44.9

Weight (kDa)

7.13

Isoelectric Point (pI)

41.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 48 - 114 5.8e-12 RNA recognition motif
RRM_1 PF00076 133 - 204 2e-17 RNA recognition motif
RRM_1 PF00076 255 - 321 1.5e-11 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 71, 830, 1103
AccI GTMKAC 2 cut(s) 601, 755
AciI CCGC 4 cut(s) 136, 1016, 1053, 1124
AclWI GGATC 1 cut(s) 500
AcsI RAATTY 1 cut(s) 1204
AcuI CTGAAG 3 cut(s) 780, 924, 1163
AcyI GRCGYC 1 cut(s) 72
AfaI GTAC 4 cut(s) 130, 205, 895, 1232
AfiI CCNNNNNNNGG 1 cut(s) 218
AgsI TTSAA 4 cut(s) 19, 218, 516, 845
AjnI CCWGG 3 cut(s) 112, 991, 1039
AjuI GAANNNNNNNTTGG 2 cut(s) 949, 981
AluBI AGCT 9 cut(s) 229, 287, 685, 911, 917, 1002, 1025, 1151, 1172
AluI AGCT 9 cut(s) 229, 287, 685, 911, 917, 1002, 1025, 1151, 1172
AlwI GGATC 1 cut(s) 500
AoxI GGCC 5 cut(s) 555, 621, 823, 1065, 1179
ApeKI GCWGC 9 cut(s) 22, 37, 287, 331, 859, 908, 975, 1025, 1148
ApoI RAATTY 1 cut(s) 1204
AseI ATTAAT 1 cut(s) 570
Asp700I GAANNNNTTC 1 cut(s) 849
AspLEI GCGC 1 cut(s) 74
AspS9I GGNCC 3 cut(s) 209, 556, 621
AsuHPI GGTGA 2 cut(s) 152, 419
AvaII GGWCC 1 cut(s) 209
AxyI CCTNAGG 2 cut(s) 420, 786
BaeGI GKGCMC 1 cut(s) 1108
BanI GGYRCC 3 cut(s) 71, 830, 1103
BbvI GCAGC 9 cut(s) 34, 49, 274, 343, 871, 920, 987, 1012, 1160
BccI CCATC 3 cut(s) 701, 816, 1153
BciT130I CCWGG 3 cut(s) 114, 993, 1041
BciVI GTATCC 1 cut(s) 370
BfaI CTAG 3 cut(s) 480, 936, 1173
BfmI CTRYAG 3 cut(s) 759, 912, 1026
BfoI RGCGCY 1 cut(s) 75
BfuI GTATCC 1 cut(s) 370
BmcAI AGTACT 2 cut(s) 130, 205
Bme1390I CCNGG 3 cut(s) 114, 993, 1041
Bme18I GGWCC 1 cut(s) 209
BmgT120I GGNCC 3 cut(s) 209, 556, 621
BmiI GGNNCC 3 cut(s) 73, 832, 1105
BmrFI CCNGG 3 cut(s) 114, 993, 1041
BmrI ACTGGG 2 cut(s) 516, 1106
BmsI GCATC 6 cut(s) 24, 212, 328, 421, 466, 721
BmuI ACTGGG 2 cut(s) 516, 1106
BpmI CTGGAG 2 cut(s) 720, 1188
BpuEI CTTGAG 1 cut(s) 115
Bsa29I ATCGAT 1 cut(s) 495
BsaHI GRCGYC 1 cut(s) 72
BsaJI CCNNGG 4 cut(s) 113, 820, 826, 992
Bsc4I CCNNNNNNNGG 1 cut(s) 218
Bse1I ACTGG 8 cut(s) 201, 211, 465, 511, 642, 922, 1101, 1237
Bse21I CCTNAGG 2 cut(s) 420, 786
BseBI CCWGG 3 cut(s) 114, 993, 1041
BseCI ATCGAT 1 cut(s) 495
BseDI CCNNGG 4 cut(s) 113, 820, 826, 992
BseGI GGATG 3 cut(s) 227, 248, 1164
BseLI CCNNNNNNNGG 1 cut(s) 218
BseMII CTCAG 6 cut(s) 92, 411, 764, 777, 1062, 1232
BseNI ACTGG 8 cut(s) 201, 211, 465, 511, 642, 922, 1101, 1237
BseSI GKGCMC 1 cut(s) 1108
BseXI GCAGC 9 cut(s) 34, 49, 274, 343, 871, 920, 987, 1012, 1160
BsgI GTGCAG 1 cut(s) 878
Bsh1285I CGRYCG 1 cut(s) 277
BshFI GGCC 5 cut(s) 557, 623, 825, 1067, 1181
BshNI GGYRCC 3 cut(s) 71, 830, 1103
BshVI ATCGAT 1 cut(s) 495
BsiEI CGRYCG 1 cut(s) 277
BsiSI CCGG 1 cut(s) 834
BslFI GGGAC 1 cut(s) 1009
BslI CCNNNNNNNGG 1 cut(s) 218
BsmFI GGGAC 1 cut(s) 1009
BsmI GAATGC 1 cut(s) 937
BsnI GGCC 5 cut(s) 557, 623, 825, 1067, 1181
Bsp1286I GDGCHC 1 cut(s) 1108
Bsp143I GATC 4 cut(s) 274, 409, 492, 496
Bsp19I CCATGG 1 cut(s) 820
BspACI CCGC 4 cut(s) 136, 1016, 1053, 1124
BspANI GGCC 5 cut(s) 557, 623, 825, 1067, 1181
BspCNI CTCAG 6 cut(s) 91, 412, 763, 778, 1061, 1231
BspDI ATCGAT 1 cut(s) 495
BspLI GGNNCC 3 cut(s) 73, 832, 1105
BspMAI CTGCAG 1 cut(s) 1030
BspPI GGATC 1 cut(s) 500
BspT107I GGYRCC 3 cut(s) 71, 830, 1103
BsrI ACTGG 8 cut(s) 201, 211, 465, 511, 642, 922, 1101, 1237
BssECI CCNNGG 4 cut(s) 113, 820, 826, 992
BssMI GATC 4 cut(s) 274, 409, 492, 496
BssNAI GTATAC 1 cut(s) 756
BssNI GRCGYC 1 cut(s) 72
BssT1I CCWWGG 2 cut(s) 820, 826
Bst1107I GTATAC 1 cut(s) 756
Bst2UI CCWGG 3 cut(s) 114, 993, 1041
Bst4CI ACNGT 4 cut(s) 441, 763, 893, 1193
BstACI GRCGYC 1 cut(s) 72
BstC8I GCNNGC 6 cut(s) 27, 227, 317, 448, 980, 1137
BstDEI CTNAG 8 cut(s) 67, 78, 413, 420, 750, 786, 1048, 1218
BstDSI CCRYGG 1 cut(s) 820
BstEII GGTNACC 1 cut(s) 1196
BstF5I GGATG 3 cut(s) 227, 248, 1164
BstH2I RGCGCY 1 cut(s) 75
BstHHI GCGC 1 cut(s) 74
BstKTI GATC 4 cut(s) 277, 412, 495, 499
BstMBI GATC 4 cut(s) 274, 409, 492, 496
BstMCI CGRYCG 1 cut(s) 277
BstMWI GCNNNNNNNGC 7 cut(s) 43, 293, 563, 914, 1132, 1145, 1178
BstNI CCWGG 3 cut(s) 114, 993, 1041
BstNSI RCATGY 2 cut(s) 450, 1139
BstPI GGTNACC 1 cut(s) 1196
BstSCI CCNGG 3 cut(s) 112, 991, 1039
BstSFI CTRYAG 3 cut(s) 759, 912, 1026
BstSLI GKGCMC 1 cut(s) 1108
BstV1I GCAGC 9 cut(s) 34, 49, 274, 343, 871, 920, 987, 1012, 1160
BstXI CCANNNNNNTGG 1 cut(s) 827
BstZ17I GTATAC 1 cut(s) 756
Bsu15I ATCGAT 1 cut(s) 495
Bsu36I CCTNAGG 2 cut(s) 420, 786
BsuI GTATCC 1 cut(s) 370
BsuRI GGCC 5 cut(s) 557, 623, 825, 1067, 1181
BsuTUI ATCGAT 1 cut(s) 495
BtgI CCRYGG 1 cut(s) 820
BtsCI GGATG 3 cut(s) 227, 248, 1164
BtsI GCAGTG 1 cut(s) 145
BtsIMutI CAGTG 4 cut(s) 145, 437, 649, 1139
Cac8I GCNNGC 6 cut(s) 27, 227, 317, 448, 980, 1137
CfoI GCGC 1 cut(s) 74
Cfr13I GGNCC 3 cut(s) 209, 556, 621
ClaI ATCGAT 1 cut(s) 495
Csp6I GTAC 4 cut(s) 129, 204, 894, 1231
CspCI CAANNNNNGTGG 2 cut(s) 1081, 1116
CviAII CATG 7 cut(s) 31, 447, 821, 969, 1117, 1136, 1228
CviQI GTAC 4 cut(s) 129, 204, 894, 1231
DdeI CTNAG 8 cut(s) 67, 78, 413, 420, 750, 786, 1048, 1218
DinI GGCGCC 1 cut(s) 73
DpnI GATC 4 cut(s) 276, 411, 494, 498
DpnII GATC 4 cut(s) 274, 409, 492, 496
Eco130I CCWWGG 2 cut(s) 820, 826
Eco47I GGWCC 1 cut(s) 209
Eco57I CTGAAG 3 cut(s) 780, 924, 1163
Eco81I CCTNAGG 2 cut(s) 420, 786
Eco91I GGTNACC 1 cut(s) 1196
EcoO65I GGTNACC 1 cut(s) 1196
EcoRII CCWGG 3 cut(s) 112, 991, 1039
EcoT14I CCWWGG 2 cut(s) 820, 826
EgeI GGCGCC 1 cut(s) 73
EheI GGCGCC 1 cut(s) 73
ErhI CCWWGG 2 cut(s) 820, 826
FaeI CATG 7 cut(s) 34, 450, 824, 972, 1120, 1139, 1231
FaqI GGGAC 1 cut(s) 1009
FatI CATG 7 cut(s) 30, 446, 820, 968, 1116, 1135, 1227
FauNDI CATATG 1 cut(s) 355
FblI GTMKAC 2 cut(s) 601, 755
FokI GGATG 3 cut(s) 234, 235, 1171
FspBI CTAG 3 cut(s) 480, 936, 1173
GlaI GCGC 1 cut(s) 73
GsuI CTGGAG 2 cut(s) 720, 1188
HaeII RGCGCY 1 cut(s) 75
HaeIII GGCC 5 cut(s) 557, 623, 825, 1067, 1181
HapII CCGG 1 cut(s) 834
HhaI GCGC 1 cut(s) 74
Hin1I GRCGYC 1 cut(s) 72
Hin1II CATG 7 cut(s) 34, 450, 824, 972, 1120, 1139, 1231
Hin6I GCGC 1 cut(s) 72
HinP1I GCGC 1 cut(s) 72
HincII GTYRAC 2 cut(s) 265, 802
HindII GTYRAC 2 cut(s) 265, 802
HinfI GANTC 3 cut(s) 122, 607, 665
HpaII CCGG 1 cut(s) 834
HphI GGTGA 2 cut(s) 152, 419
Hpy166II GTNNAC 6 cut(s) 212, 265, 602, 756, 802, 1033
Hpy188I TCNGA 9 cut(s) 81, 152, 369, 475, 501, 542, 664, 703, 904
Hpy188III TCNNGA 4 cut(s) 94, 713, 737, 785
Hpy8I GTNNAC 6 cut(s) 212, 265, 602, 756, 802, 1033
Hpy99I CGWCG 1 cut(s) 1193
HpyAV CCTTC 3 cut(s) 212, 232, 1138
HpyCH4III ACNGT 4 cut(s) 441, 763, 893, 1193
HpyF10VI GCNNNNNNNGC 7 cut(s) 43, 293, 563, 914, 1132, 1145, 1178
HpyF3I CTNAG 8 cut(s) 67, 78, 413, 420, 750, 786, 1048, 1218
Hsp92I GRCGYC 1 cut(s) 72
Hsp92II CATG 7 cut(s) 34, 450, 824, 972, 1120, 1139, 1231
HspAI GCGC 1 cut(s) 72
KasI GGCGCC 1 cut(s) 71
Kzo9I GATC 4 cut(s) 274, 409, 492, 496
LmnI GCTCC 2 cut(s) 739, 1169
Lsp1109I GCAGC 9 cut(s) 34, 49, 274, 343, 871, 920, 987, 1012, 1160
LweI GCATC 6 cut(s) 24, 212, 328, 421, 466, 721
MaeI CTAG 3 cut(s) 480, 936, 1173
MaeIII GTNAC 5 cut(s) 169, 301, 424, 790, 1196
MalI GATC 4 cut(s) 276, 411, 494, 498
MboI GATC 4 cut(s) 274, 409, 492, 496
MboII GAAGA 3 cut(s) 716, 740, 857
MfeI CAATTG 1 cut(s) 616
MhlI GDGCHC 1 cut(s) 1108
MluCI AATT 5 cut(s) 346, 567, 616, 957, 1204
Mly113I GGCGCC 1 cut(s) 72
MmeI TCCRAC 1 cut(s) 130
MroXI GAANNNNTTC 1 cut(s) 849
MseI TTAA 7 cut(s) 309, 339, 345, 393, 570, 578, 960
MslI CAYNNNNRTG 1 cut(s) 819
MspA1I CMGCKG 3 cut(s) 287, 911, 1025
MspI CCGG 1 cut(s) 834
MspR9I CCNGG 3 cut(s) 114, 993, 1041
MunI CAATTG 1 cut(s) 616
Mva1269I GAATGC 1 cut(s) 937
MvaI CCWGG 3 cut(s) 114, 993, 1041
MwoI GCNNNNNNNGC 7 cut(s) 43, 293, 563, 914, 1132, 1145, 1178
NarI GGCGCC 1 cut(s) 72
NcoI CCATGG 1 cut(s) 820
NdeI CATATG 1 cut(s) 355
NdeII GATC 4 cut(s) 274, 409, 492, 496
NlaIII CATG 7 cut(s) 34, 450, 824, 972, 1120, 1139, 1231
NlaIV GGNNCC 3 cut(s) 73, 832, 1105
NmuCI GTSAC 1 cut(s) 301
NspI RCATGY 2 cut(s) 450, 1139
PaeI GCATGC 2 cut(s) 450, 1139
PcsI WCGNNNNNNNCGW 1 cut(s) 859
PctI GAATGC 1 cut(s) 937
PdmI GAANNNNTTC 1 cut(s) 849
PfeI GAWTC 3 cut(s) 122, 607, 665
Ple19I CGATCG 1 cut(s) 277
PluTI GGCGCC 1 cut(s) 75
PshBI ATTAAT 1 cut(s) 570
Psp6I CCWGG 3 cut(s) 112, 991, 1039
PspEI GGTNACC 1 cut(s) 1196
PspGI CCWGG 3 cut(s) 112, 991, 1039
PspN4I GGNNCC 3 cut(s) 73, 832, 1105
PspPI GGNCC 3 cut(s) 209, 556, 621
PstI CTGCAG 1 cut(s) 1030
PvuI CGATCG 1 cut(s) 277
PvuII CAGCTG 3 cut(s) 287, 911, 1025
RsaI GTAC 4 cut(s) 130, 205, 895, 1232
RsaNI GTAC 4 cut(s) 129, 204, 894, 1231
RseI CAYNNNNRTG 1 cut(s) 819
SaqAI TTAA 7 cut(s) 309, 339, 345, 393, 570, 578, 960
Sau3AI GATC 4 cut(s) 274, 409, 492, 496
Sau96I GGNCC 3 cut(s) 209, 556, 621
ScaI AGTACT 2 cut(s) 130, 205
ScrFI CCNGG 3 cut(s) 114, 993, 1041
SduI GDGCHC 1 cut(s) 1108
SfaNI GCATC 6 cut(s) 24, 212, 328, 421, 466, 721
SfcI CTRYAG 3 cut(s) 759, 912, 1026
SfoI GGCGCC 1 cut(s) 73
SinI GGWCC 1 cut(s) 209
SmiMI CAYNNNNRTG 1 cut(s) 819
SmlI CTYRAG 1 cut(s) 94
SmoI CTYRAG 1 cut(s) 94
SphI GCATGC 2 cut(s) 450, 1139
Sse9I AATT 5 cut(s) 346, 567, 616, 957, 1204
SsiI CCGC 4 cut(s) 136, 1016, 1053, 1124
SspDI GGCGCC 1 cut(s) 71
SspI AATATT 2 cut(s) 157, 397
SspMI CTAG 3 cut(s) 480, 936, 1173
StyD4I CCNGG 3 cut(s) 112, 991, 1039
StyI CCWWGG 2 cut(s) 820, 826
TaaI ACNGT 4 cut(s) 441, 763, 893, 1193
TaqI TCGA 4 cut(s) 125, 273, 495, 1004
TasI AATT 5 cut(s) 346, 567, 616, 957, 1204
TatI WGTACW 3 cut(s) 128, 203, 1230
TauI GCSGC 2 cut(s) 138, 1055
TfiI GAWTC 3 cut(s) 122, 607, 665
Tru1I TTAA 7 cut(s) 309, 339, 345, 393, 570, 578, 960
Tru9I TTAA 7 cut(s) 309, 339, 345, 393, 570, 578, 960
TscAI CASTG 4 cut(s) 145, 444, 649, 1146
TseFI GTSAC 1 cut(s) 301
TseI GCWGC 9 cut(s) 22, 37, 287, 331, 859, 908, 975, 1025, 1148
Tsp45I GTSAC 1 cut(s) 301
TspDTI ATGAA 3 cut(s) 741, 957, 1086
TspRI CASTG 4 cut(s) 145, 444, 649, 1146
VpaK11BI GGWCC 1 cut(s) 209
VspI ATTAAT 1 cut(s) 570
XapI RAATTY 1 cut(s) 1204
XceI RCATGY 2 cut(s) 450, 1139
XmiI GTMKAC 2 cut(s) 601, 755
XmnI GAANNNNTTC 1 cut(s) 849
XspI CTAG 3 cut(s) 480, 936, 1173
ZrmI AGTACT 2 cut(s) 130, 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.