Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004118

Physical Location & Seq

Genomic Coordinates Forward (+)

3955344 .. 3955924

Gene Structure 581 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0051600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGATAGAAAACACTGGTGCAGCACAAGCAGCAGAACTATCCGGTTGGGGCGGTATTACCATGACACTGACCCTCATGTGAGCTCGCACTCAGCTAGATCAAACAAGTCACGGTGGAGCACATTGTGGATGAAGTTGAAGAAAGAGAAGAAGAAGATTTTCGATTCTCCAGCTAGCTCTCGCTCTGCGAAGCTCCAATATGATGCTTTCTCTTACTCCCAGAATTTTGATCAAGGATGTTCCTGGGACCAACCTGATGAAGATGACCTTTGTTCGCGCTCCTTCTCCATGCGTTTTGCAGTTCCTTCTAACATCTTTCGAAAGGAAGATTTGCTTCCCTGGGAGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005764 GO:0005773 GO:0006355 GO:0006357 GO:0006915 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0008150 GO:0008219 GO:0008543 GO:0009719 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010494 GO:0010556 GO:0012501 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0035770 GO:0036464 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044344 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070848 GO:0070887 GO:0071310 GO:0071363 GO:0071495 GO:0071774 GO:0080090 GO:1903506 GO:1990904 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

116

Amino Acids

13.78

Weight (kDa)

9.05

Isoelectric Point (pI)

69.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004118)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17370 AT1G17370 AT1G54080 AT3G14100
fragaria_vesca	FvH4_1g09080 FvH4_6g35150
malus_domestica	MD02G1096200.v1.1 MD09G1178500.v1.1 MD17G1148300.v1.1
prunus_persica	Prupe.3G037700_v2.0.a1 Prupe.3G037700_v2.0.a1 Prupe.7G194700_v2.0.a1 Prupe.7G194700_v2.0.a1
pyrus_communis	pycom02g07600 pycom15g19550 pycom17g14160
rosa_chinensis	RchiOBHm_Chr2g0095491 RchiOBHm_Chr2g0146411
rosa_laevigata	RLG00000016572 RLG00000020198
rosa_multiflora	Rmu_sc0006076.1_g000007
rosa_roxburghii	Rroxscaffold_2G00100120 Rroxscaffold_2G00146260
rosa_rugosa	Rorug02G0051600 Rorug02G0394100 Rorug02G0394200
rosa_samantha	Rh2AG450900 Rh2BG100900 Rh2BG463300 Rh2CG437700 Rh2DG472300
rosa_wichuraiana	Rw2G007550 Rw2G036800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	277
AciI	CCGC	1 cut(s)	52
AcsI	RAATTY	1 cut(s)	223
AdeI	CACNNNGTG	1 cut(s)	126
AgsI	TTSAA	1 cut(s)	139
AjnI	CCWGG	2 cut(s)	242, 338
AluBI	AGCT	5 cut(s)	84, 95, 173, 177, 193
AluI	AGCT	5 cut(s)	84, 95, 173, 177, 193
Alw21I	GWGCWC	2 cut(s)	86, 122
ApeKI	GCWGC	2 cut(s)	21, 30
ApoI	RAATTY	1 cut(s)	223
Asp700I	GAANNNNTTC	1 cut(s)	158
AspLEI	GCGC	1 cut(s)	279
AspS9I	GGNCC	1 cut(s)	247
AsuII	TTCGAA	1 cut(s)	319
AsuNHI	GCTAGC	1 cut(s)	173
AvaII	GGWCC	1 cut(s)	247
BanII	GRGCYC	1 cut(s)	86
Bbv12I	GWGCWC	2 cut(s)	86, 122
BbvI	GCAGC	2 cut(s)	33, 42
BciT130I	CCWGG	2 cut(s)	244, 340
BclI	TGATCA	1 cut(s)	229
BfaI	CTAG	2 cut(s)	96, 174
BisI	GCNGC	2 cut(s)	22, 31
BlsI	GCNGC	2 cut(s)	23, 32
Bme1390I	CCNGG	2 cut(s)	244, 340
Bme18I	GGWCC	1 cut(s)	247
BmgT120I	GGNCC	1 cut(s)	247
BmiI	GGNNCC	1 cut(s)	248
BmrFI	CCNGG	2 cut(s)	244, 340
BmsI	GCATC	1 cut(s)	193
BmtI	GCTAGC	1 cut(s)	177
BpmI	CTGGAG	1 cut(s)	153
Bpu14I	TTCGAA	1 cut(s)	319
BsaJI	CCNNGG	3 cut(s)	243, 338, 339
BsaWI	WCCGGW	1 cut(s)	42
Bse1I	ACTGG	1 cut(s)	20
BseBI	CCWGG	2 cut(s)	244, 340
BseDI	CCNNGG	3 cut(s)	243, 338, 339
BseGI	GGATG	2 cut(s)	135, 242
BseMII	CTCAG	1 cut(s)	105
BseNI	ACTGG	1 cut(s)	20
BseXI	GCAGC	2 cut(s)	33, 42
BsgI	GTGCAG	1 cut(s)	40
Bsh1236I	CGCG	1 cut(s)	277
BsiHKAI	GWGCWC	2 cut(s)	86, 122
BsiSI	CCGG	1 cut(s)	43
BslFI	GGGAC	1 cut(s)	260
BsmFI	GGGAC	1 cut(s)	260
Bsp119I	TTCGAA	1 cut(s)	319
Bsp1286I	GDGCHC	2 cut(s)	86, 122
Bsp143I	GATC	2 cut(s)	98, 229
BspACI	CCGC	1 cut(s)	52
BspCNI	CTCAG	1 cut(s)	104
BspFNI	CGCG	1 cut(s)	277
BspLI	GGNNCC	1 cut(s)	248
BspOI	GCTAGC	1 cut(s)	177
BspT104I	TTCGAA	1 cut(s)	319
BsrI	ACTGG	1 cut(s)	20
BssECI	CCNNGG	3 cut(s)	243, 338, 339
BssMI	GATC	2 cut(s)	98, 229
Bst2UI	CCWGG	2 cut(s)	244, 340
Bst4CI	ACNGT	1 cut(s)	114
BstBI	TTCGAA	1 cut(s)	319
BstC8I	GCNNGC	2 cut(s)	86, 175
BstDEI	CTNAG	1 cut(s)	91
BstF5I	GGATG	2 cut(s)	135, 242
BstFNI	CGCG	1 cut(s)	277
BstHHI	GCGC	1 cut(s)	279
BstKTI	GATC	2 cut(s)	101, 232
BstMBI	GATC	2 cut(s)	98, 229
BstMWI	GCNNNNNNNGC	2 cut(s)	27, 30
BstNI	CCWGG	2 cut(s)	244, 340
BstSCI	CCNGG	2 cut(s)	242, 338
BstUI	CGCG	1 cut(s)	277
BstV1I	GCAGC	2 cut(s)	33, 42
BtsCI	GGATG	2 cut(s)	135, 242
BtsIMutI	CAGTG	2 cut(s)	13, 66
Cac8I	GCNNGC	2 cut(s)	86, 175
CfoI	GCGC	1 cut(s)	279
Cfr13I	GGNCC	1 cut(s)	247
CviAII	CATG	3 cut(s)	62, 77, 289
CviJI	RGCY	5 cut(s)	84, 95, 173, 177, 193
CviKI_1	RGCY	5 cut(s)	84, 95, 173, 177, 193
DdeI	CTNAG	1 cut(s)	91
DpnI	GATC	2 cut(s)	100, 231
DpnII	GATC	2 cut(s)	98, 229
DraIII	CACNNNGTG	1 cut(s)	126
Ecl136II	GAGCTC	1 cut(s)	84
Eco24I	GRGCYC	1 cut(s)	86
Eco47I	GGWCC	1 cut(s)	247
Eco53kI	GAGCTC	1 cut(s)	84
EcoICRI	GAGCTC	1 cut(s)	84
EcoRII	CCWGG	2 cut(s)	242, 338
EcoT38I	GRGCYC	1 cut(s)	86
FaeI	CATG	3 cut(s)	65, 80, 292
FaiI	YATR	4 cut(s)	63, 78, 201, 290
FalI	AAGNNNNNCTT	4 cut(s)	252, 284, 318, 350
FaqI	GGGAC	1 cut(s)	260
FatI	CATG	3 cut(s)	61, 76, 288
FbaI	TGATCA	1 cut(s)	229
Fnu4HI	GCNGC	2 cut(s)	22, 31
FokI	GGATG	2 cut(s)	142, 249
FriOI	GRGCYC	1 cut(s)	86
Fsp4HI	GCNGC	2 cut(s)	22, 31
FspBI	CTAG	2 cut(s)	96, 174
GlaI	GCGC	1 cut(s)	278
GluI	GCNGC	2 cut(s)	22, 31
GsuI	CTGGAG	1 cut(s)	153
HapII	CCGG	1 cut(s)	43
HhaI	GCGC	1 cut(s)	279
Hin1II	CATG	3 cut(s)	65, 80, 292
Hin6I	GCGC	1 cut(s)	277
HinP1I	GCGC	1 cut(s)	277
HinfI	GANTC	1 cut(s)	164
HpaII	CCGG	1 cut(s)	43
HpyAV	CCTTC	2 cut(s)	292, 315
HpyCH4III	ACNGT	1 cut(s)	114
HpyCH4V	TGCA	2 cut(s)	21, 299
HpyF10VI	GCNNNNNNNGC	2 cut(s)	27, 30
HpyF3I	CTNAG	1 cut(s)	91
Hsp92II	CATG	3 cut(s)	65, 80, 292
HspAI	GCGC	1 cut(s)	277
Ksp22I	TGATCA	1 cut(s)	229
Kzo9I	GATC	2 cut(s)	98, 229
LmnI	GCTCC	3 cut(s)	117, 198, 284
LpnPI	CCDG	7 cut(s)	56, 183, 229, 233, 256, 267, 325
Lsp1109I	GCAGC	2 cut(s)	33, 42
LweI	GCATC	1 cut(s)	193
MaeI	CTAG	2 cut(s)	96, 174
MaeIII	GTNAC	1 cut(s)	108
MalI	GATC	2 cut(s)	100, 231
MboI	GATC	2 cut(s)	98, 229
MboII	GAAGA	6 cut(s)	151, 160, 163, 166, 272, 338
MhlI	GDGCHC	2 cut(s)	86, 122
MluCI	AATT	1 cut(s)	223
MnlI	CCTC	2 cut(s)	84, 337
MroXI	GAANNNNTTC	1 cut(s)	158
MspI	CCGG	1 cut(s)	43
MspR9I	CCNGG	2 cut(s)	244, 340
MvaI	CCWGG	2 cut(s)	244, 340
MvnI	CGCG	1 cut(s)	277
MwoI	GCNNNNNNNGC	2 cut(s)	27, 30
NdeII	GATC	2 cut(s)	98, 229
NheI	GCTAGC	1 cut(s)	173
NlaIII	CATG	3 cut(s)	65, 80, 292
NlaIV	GGNNCC	1 cut(s)	248
NmuCI	GTSAC	1 cut(s)	108
NspV	TTCGAA	1 cut(s)	319
PasI	CCCWGGG	1 cut(s)	339
PdmI	GAANNNNTTC	1 cut(s)	158
PfeI	GAWTC	1 cut(s)	164
PkrI	GCNGC	2 cut(s)	23, 32
Psp124BI	GAGCTC	1 cut(s)	86
Psp6I	CCWGG	2 cut(s)	242, 338
PspGI	CCWGG	2 cut(s)	242, 338
PspN4I	GGNNCC	1 cut(s)	248
PspPI	GGNCC	1 cut(s)	247
SacI	GAGCTC	1 cut(s)	86
SatI	GCNGC	2 cut(s)	22, 31
Sau3AI	GATC	2 cut(s)	98, 229
Sau96I	GGNCC	1 cut(s)	247
ScrFI	CCNGG	2 cut(s)	244, 340
SduI	GDGCHC	2 cut(s)	86, 122
SetI	ASST	7 cut(s)	86, 97, 175, 179, 195, 256, 270
SfaNI	GCATC	1 cut(s)	193
SfuI	TTCGAA	1 cut(s)	319
SinI	GGWCC	1 cut(s)	247
Sse9I	AATT	1 cut(s)	223
SsiI	CCGC	1 cut(s)	52
SspMI	CTAG	2 cut(s)	96, 174
SstI	GAGCTC	1 cut(s)	86
StyD4I	CCNGG	2 cut(s)	242, 338
TaaI	ACNGT	1 cut(s)	114
TaqI	TCGA	2 cut(s)	162, 319
TasI	AATT	1 cut(s)	223
TfiI	GAWTC	1 cut(s)	164
TscAI	CASTG	2 cut(s)	20, 73
TseFI	GTSAC	1 cut(s)	108
TseI	GCWGC	2 cut(s)	21, 30
Tsp45I	GTSAC	1 cut(s)	108
TspDTI	ATGAA	2 cut(s)	146, 273
TspRI	CASTG	2 cut(s)	20, 73
VpaK11BI	GGWCC	1 cut(s)	247
XapI	RAATTY	1 cut(s)	223
XmnI	GAANNNNTTC	1 cut(s)	158
XspI	CTAG	2 cut(s)	96, 174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.