Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006076.1

Orthogroup ID

OG0004118

Physical Location & Seq

Genomic Coordinates Reverse (-)

26127 .. 30146

Gene Structure 4020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006076.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

atgcaacagcagcagcagaggcttaaacaacagcagcagcagcagcaacaagccatgatgcagcagtcgctttaccagcaccctgctctcttagccccgcctcagatagagcctatcttgagtggaaatctgcctcctgggtttgattcaagtacatgccgcagtgtgtatgttggaaatattcatccccaggttactgatacccttcttcaagaagtttttgccagtaccggcccacttgagggatgcaagctcataaggaaagataagtcatcctatggatttgttgattactatgatcgccgatcagctgcccttgctattgtttctctcaacggcaggcatctgtttggacagccaattaaagttaattgggcctatcaaagtagtcagagggaggatacttcaggtcattttaatatttttgttggtgatcttagcgctgaggttaccgatgctacattgtttgcatgcttttctgtttaccccagttgttcagatgcaagggttatgtgggatccaaaaagtgggcgctcaaggggctttgggtttgtttcattccggaatcagcaggatgcccaaagtgccataaatgacttaaatggaaagtggcttgcaagtagacaaattcggtgcaactgggctacaaaaggtgctgcttcaaatgatgataaacagagttctgattctaaaagtgtggtcgagctgacaaatggaacatcagaagatggtcaggagaagcctaatgaagatgctccagagaacaatcctcagtataccacagtttatgttggcaatctggctcctgaggttactcaagctgaactccatcgtcatttccatgcccttggtgctggaactatagaagatgttagggtgcaacgagataaaggttttgggtttgtgagatacagtacacattctgaagcagccgcagctatccagatggggaatgctaggtttctctgtggaaaaccaataaagtgttcatggggtagcaagcctactccaccaggaaccacctccagccctctcgctccaccagctgcagcttatatgccaggtttttcagccactgacctagtggcatatgaacgacaaatggcatatagtaaaatgggtggtccacaagccctcatgcttccccagggtcagcatggtatgaaggcacccatgggaatgggtgctggaactagtcaggcgatatatgacggtggctaccagaatgtagcaacatcccagcagctcatgtactaccagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005764 GO:0005773 GO:0006355 GO:0006357 GO:0006915 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0008150 GO:0008219 GO:0008543 GO:0009719 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010494 GO:0010556 GO:0012501 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0035770 GO:0036464 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044344 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070848 GO:0070887 GO:0071310 GO:0071363 GO:0071495 GO:0071774 GO:0080090 GO:1903506 GO:1990904 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

420

Amino Acids

45.99

Weight (kDa)

7.1

Isoelectric Point (pI)

48.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004118)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17370 AT1G17370 AT1G54080 AT3G14100
fragaria_vesca	FvH4_1g09080 FvH4_6g35150
malus_domestica	MD02G1096200.v1.1 MD09G1178500.v1.1 MD17G1148300.v1.1
prunus_persica	Prupe.3G037700_v2.0.a1 Prupe.3G037700_v2.0.a1 Prupe.7G194700_v2.0.a1 Prupe.7G194700_v2.0.a1
pyrus_communis	pycom02g07600 pycom15g19550 pycom17g14160
rosa_chinensis	RchiOBHm_Chr2g0095491 RchiOBHm_Chr2g0146411
rosa_laevigata	RLG00000016572 RLG00000020198
rosa_multiflora	Rmu_sc0006076.1_g000007
rosa_roxburghii	Rroxscaffold_2G00100120 Rroxscaffold_2G00146260
rosa_rugosa	Rorug02G0051600 Rorug02G0394100 Rorug02G0394200
rosa_samantha	Rh2AG450900 Rh2BG100900 Rh2BG463300 Rh2CG437700 Rh2DG472300
rosa_wichuraiana	Rw2G007550 Rw2G036800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1168
AccB7I	CCANNNNNTGG	1 cut(s)	527
AccI	GTMKAC	2 cut(s)	622, 776
AccIII	TCCGGA	1 cut(s)	561
AciI	CCGC	3 cut(s)	98, 160, 933
AclWI	GGATC	2 cut(s)	512, 525
AcsI	RAATTY	1 cut(s)	627
AcuI	CTGAAG	2 cut(s)	390, 945
AfaI	GTAC	4 cut(s)	154, 229, 916, 1253
AfeI	AGCGCT	1 cut(s)	442
AfiI	CCNNNNNNNGG	3 cut(s)	241, 242, 527
AgsI	TTSAA	3 cut(s)	150, 212, 663
AhlI	ACTAGT	1 cut(s)	1193
AjnI	CCWGG	5 cut(s)	136, 189, 1012, 1060, 1146
AjuI	GAANNNNNNNTTGG	2 cut(s)	970, 1002
AluBI	AGCT	8 cut(s)	253, 311, 706, 821, 938, 1046, 1052, 1246
AluI	AGCT	8 cut(s)	253, 311, 706, 821, 938, 1046, 1052, 1246
AlwI	GGATC	2 cut(s)	512, 525
AlwNI	CAGNNNCTG	1 cut(s)	1076
Aor13HI	TCCGGA	1 cut(s)	561
Aor51HI	AGCGCT	1 cut(s)	442
AoxI	GGCC	2 cut(s)	232, 375
ApoI	RAATTY	1 cut(s)	627
AspLEI	GCGC	2 cut(s)	443, 534
AspS9I	GGNCC	3 cut(s)	233, 375, 1124
AsuHPI	GGTGA	1 cut(s)	443
AvaII	GGWCC	1 cut(s)	1124
AxyI	CCTNAGG	1 cut(s)	807
BamHI	GGATCC	1 cut(s)	517
BanI	GGYRCC	1 cut(s)	1168
BbvCI	CCTCAGC	1 cut(s)	444
BccI	CCATC	3 cut(s)	722, 837, 940
BceAI	ACGGC	1 cut(s)	352
BciT130I	CCWGG	5 cut(s)	138, 191, 1014, 1062, 1148
BciVI	GTATCC	1 cut(s)	394
BcuI	ACTAGT	1 cut(s)	1193
BfaI	CTAG	3 cut(s)	957, 1082, 1194
BfmI	CTRYAG	2 cut(s)	861, 1047
BfoI	RGCGCY	2 cut(s)	444, 535
BfuI	GTATCC	1 cut(s)	394
Bme1390I	CCNGG	5 cut(s)	138, 191, 1014, 1062, 1148
Bme18I	GGWCC	1 cut(s)	1124
BmgT120I	GGNCC	3 cut(s)	233, 375, 1124
BmiI	GGNNCC	4 cut(s)	519, 804, 1018, 1170
BmrFI	CCNGG	5 cut(s)	138, 191, 1014, 1062, 1148
BmrI	ACTGGG	2 cut(s)	483, 649
BmsI	GCATC	7 cut(s)	48, 236, 352, 445, 490, 565, 742
BmuI	ACTGGG	2 cut(s)	483, 649
BpmI	CTGGAG	2 cut(s)	741, 1009
Bpu10I	CCTNAGC	1 cut(s)	444
BpuEI	CTTGAG	4 cut(s)	139, 260, 520, 801
BsaJI	CCNNGG	6 cut(s)	137, 189, 847, 1146, 1147, 1173
BsaWI	WCCGGW	1 cut(s)	561
Bsc4I	CCNNNNNNNGG	3 cut(s)	241, 242, 527
Bse118I	RCCGGY	1 cut(s)	230
Bse1I	ACTGG	4 cut(s)	225, 489, 644, 1258
Bse21I	CCTNAGG	1 cut(s)	807
BseAI	TCCGGA	1 cut(s)	561
BseBI	CCWGG	5 cut(s)	138, 191, 1014, 1062, 1148
BseDI	CCNNGG	6 cut(s)	137, 189, 847, 1146, 1147, 1173
BseGI	GGATG	5 cut(s)	184, 251, 272, 580, 1235
BseLI	CCNNNNNNNGG	3 cut(s)	241, 242, 527
BseMII	CTCAG	4 cut(s)	116, 435, 785, 798
BseNI	ACTGG	4 cut(s)	225, 489, 644, 1258
BseYI	CCCAGC	1 cut(s)	1239
BshFI	GGCC	2 cut(s)	234, 377
BshNI	GGYRCC	1 cut(s)	1168
BsiSI	CCGG	2 cut(s)	231, 562
BslI	CCNNNNNNNGG	3 cut(s)	241, 242, 527
BsmI	GAATGC	1 cut(s)	958
BsnI	GGCC	2 cut(s)	234, 377
Bsp13I	TCCGGA	1 cut(s)	561
Bsp143I	GATC	4 cut(s)	298, 305, 433, 517
Bsp19I	CCATGG	1 cut(s)	1173
BspACI	CCGC	3 cut(s)	98, 160, 933
BspANI	GGCC	2 cut(s)	234, 377
BspCNI	CTCAG	4 cut(s)	115, 436, 784, 799
BspEI	TCCGGA	1 cut(s)	561
BspLI	GGNNCC	4 cut(s)	519, 804, 1018, 1170
BspMAI	CTGCAG	1 cut(s)	1051
BspPI	GGATC	2 cut(s)	512, 525
BspT107I	GGYRCC	1 cut(s)	1168
BsrFI	RCCGGY	1 cut(s)	230
BsrI	ACTGG	4 cut(s)	225, 489, 644, 1258
BssAI	RCCGGY	1 cut(s)	230
BssECI	CCNNGG	6 cut(s)	137, 189, 847, 1146, 1147, 1173
BssMI	GATC	4 cut(s)	298, 305, 433, 517
BssNAI	GTATAC	1 cut(s)	777
BssT1I	CCWWGG	2 cut(s)	847, 1173
Bst1107I	GTATAC	1 cut(s)	777
Bst2UI	CCWGG	5 cut(s)	138, 191, 1014, 1062, 1148
Bst4CI	ACNGT	3 cut(s)	784, 914, 1214
BstC8I	GCNNGC	5 cut(s)	251, 341, 472, 615, 1001
BstDEI	CTNAG	6 cut(s)	91, 102, 437, 444, 771, 807
BstDSI	CCRYGG	1 cut(s)	1173
BstEII	GGTNACC	1 cut(s)	448
BstF5I	GGATG	5 cut(s)	184, 251, 272, 580, 1235
BstH2I	RGCGCY	2 cut(s)	444, 535
BstHHI	GCGC	2 cut(s)	443, 534
BstKTI	GATC	4 cut(s)	301, 308, 436, 520
BstMBI	GATC	4 cut(s)	298, 305, 433, 517
BstNI	CCWGG	5 cut(s)	138, 191, 1014, 1062, 1148
BstNSI	RCATGY	2 cut(s)	159, 474
BstPI	GGTNACC	1 cut(s)	448
BstSCI	CCNGG	5 cut(s)	136, 189, 1012, 1060, 1146
BstSFI	CTRYAG	2 cut(s)	861, 1047
BstX2I	RGATCY	1 cut(s)	517
BstXI	CCANNNNNNTGG	2 cut(s)	848, 1180
BstYI	RGATCY	1 cut(s)	517
BstZ17I	GTATAC	1 cut(s)	777
Bsu36I	CCTNAGG	1 cut(s)	807
BsuI	GTATCC	1 cut(s)	394
BsuRI	GGCC	2 cut(s)	234, 377
BtgI	CCRYGG	1 cut(s)	1173
BtsCI	GGATG	5 cut(s)	184, 251, 272, 580, 1235
BtsI	GCAGTG	1 cut(s)	169
BtsIMutI	CAGTG	2 cut(s)	169, 1074
Cac8I	GCNNGC	5 cut(s)	251, 341, 472, 615, 1001
CaiI	CAGNNNCTG	1 cut(s)	1076
CfoI	GCGC	2 cut(s)	443, 534
Cfr10I	RCCGGY	1 cut(s)	230
Cfr13I	GGNCC	3 cut(s)	233, 375, 1124
Csp6I	GTAC	4 cut(s)	153, 228, 915, 1252
CviAII	CATG	9 cut(s)	55, 156, 471, 842, 990, 1138, 1157, 1174, 1249
CviQI	GTAC	4 cut(s)	153, 228, 915, 1252
DdeI	CTNAG	6 cut(s)	91, 102, 437, 444, 771, 807
DpnI	GATC	4 cut(s)	300, 307, 435, 519
DpnII	GATC	4 cut(s)	298, 305, 433, 517
Eco130I	CCWWGG	2 cut(s)	847, 1173
Eco47I	GGWCC	1 cut(s)	1124
Eco47III	AGCGCT	1 cut(s)	442
Eco57I	CTGAAG	2 cut(s)	390, 945
Eco81I	CCTNAGG	1 cut(s)	807
Eco91I	GGTNACC	1 cut(s)	448
EcoO65I	GGTNACC	1 cut(s)	448
EcoRII	CCWGG	5 cut(s)	136, 189, 1012, 1060, 1146
EcoT14I	CCWWGG	2 cut(s)	847, 1173
ErhI	CCWWGG	2 cut(s)	847, 1173
FaeI	CATG	9 cut(s)	58, 159, 474, 845, 993, 1141, 1160, 1177, 1252
FatI	CATG	9 cut(s)	54, 155, 470, 841, 989, 1137, 1156, 1173, 1248
FauI	CCCGC	1 cut(s)	105
FauNDI	CATATG	1 cut(s)	1090
FblI	GTMKAC	2 cut(s)	622, 776
FokI	GGATG	5 cut(s)	171, 258, 259, 587, 1222
FspBI	CTAG	3 cut(s)	957, 1082, 1194
GlaI	GCGC	2 cut(s)	442, 533
GsaI	CCCAGC	1 cut(s)	1243
GsuI	CTGGAG	2 cut(s)	741, 1009
HaeII	RGCGCY	2 cut(s)	444, 535
HaeIII	GGCC	2 cut(s)	234, 377
HapII	CCGG	2 cut(s)	231, 562
HhaI	GCGC	2 cut(s)	443, 534
Hin1II	CATG	9 cut(s)	58, 159, 474, 845, 993, 1141, 1160, 1177, 1252
Hin6I	GCGC	2 cut(s)	441, 532
HinP1I	GCGC	2 cut(s)	441, 532
HinfI	GANTC	3 cut(s)	146, 565, 686
HpaII	CCGG	2 cut(s)	231, 562
HphI	GGTGA	1 cut(s)	443
Hpy166II	GTNNAC	5 cut(s)	484, 623, 777, 917, 1127
Hpy188I	TCNGA	6 cut(s)	105, 393, 499, 685, 724, 925
Hpy188III	TCNNGA	7 cut(s)	118, 212, 562, 734, 758, 806, 943
Hpy8I	GTNNAC	5 cut(s)	484, 623, 777, 917, 1127
HpyAV	CCTTC	2 cut(s)	215, 1159
HpyCH4III	ACNGT	3 cut(s)	784, 914, 1214
HpyCH4V	TGCA	9 cut(s)	4, 61, 249, 470, 503, 617, 636, 880, 1049
HpyF3I	CTNAG	6 cut(s)	91, 102, 437, 444, 771, 807
Hsp92II	CATG	9 cut(s)	58, 159, 474, 845, 993, 1141, 1160, 1177, 1252
HspAI	GCGC	2 cut(s)	441, 532
Kpn2I	TCCGGA	1 cut(s)	561
Kzo9I	GATC	4 cut(s)	298, 305, 433, 517
LmnI	GCTCC	3 cut(s)	760, 808, 1042
LweI	GCATC	7 cut(s)	48, 236, 352, 445, 490, 565, 742
MaeI	CTAG	3 cut(s)	957, 1082, 1194
MaeIII	GTNAC	3 cut(s)	193, 448, 811
MalI	GATC	4 cut(s)	300, 307, 435, 519
MboI	GATC	4 cut(s)	298, 305, 433, 517
MboII	GAAGA	4 cut(s)	200, 737, 761, 878
MflI	RGATCY	1 cut(s)	517
MluCI	AATT	3 cut(s)	360, 370, 627
MmeI	TCCRAC	1 cut(s)	154
MroI	TCCGGA	1 cut(s)	561
MseI	TTAA	5 cut(s)	24, 363, 369, 417, 599
MslI	CAYNNNNRTG	2 cut(s)	840, 1178
MspA1I	CMGCKG	2 cut(s)	311, 1046
MspI	CCGG	2 cut(s)	231, 562
MspR9I	CCNGG	5 cut(s)	138, 191, 1014, 1062, 1148
Mva1269I	GAATGC	1 cut(s)	958
MvaI	CCWGG	5 cut(s)	138, 191, 1014, 1062, 1148
NcoI	CCATGG	1 cut(s)	1173
NdeI	CATATG	1 cut(s)	1090
NdeII	GATC	4 cut(s)	298, 305, 433, 517
NlaIII	CATG	9 cut(s)	58, 159, 474, 845, 993, 1141, 1160, 1177, 1252
NlaIV	GGNNCC	4 cut(s)	519, 804, 1018, 1170
NspI	RCATGY	2 cut(s)	159, 474
PaeI	GCATGC	1 cut(s)	474
PasI	CCCWGGG	1 cut(s)	1147
PctI	GAATGC	1 cut(s)	958
PfeI	GAWTC	3 cut(s)	146, 565, 686
PflMI	CCANNNNNTGG	1 cut(s)	527
Psp6I	CCWGG	5 cut(s)	136, 189, 1012, 1060, 1146
PspEI	GGTNACC	1 cut(s)	448
PspFI	CCCAGC	1 cut(s)	1239
PspGI	CCWGG	5 cut(s)	136, 189, 1012, 1060, 1146
PspN4I	GGNNCC	4 cut(s)	519, 804, 1018, 1170
PspPI	GGNCC	3 cut(s)	233, 375, 1124
PstI	CTGCAG	1 cut(s)	1051
PstNI	CAGNNNCTG	1 cut(s)	1076
PsuI	RGATCY	1 cut(s)	517
PvuII	CAGCTG	2 cut(s)	311, 1046
RsaI	GTAC	4 cut(s)	154, 229, 916, 1253
RsaNI	GTAC	4 cut(s)	153, 228, 915, 1252
RseI	CAYNNNNRTG	2 cut(s)	840, 1178
SaqAI	TTAA	5 cut(s)	24, 363, 369, 417, 599
Sau3AI	GATC	4 cut(s)	298, 305, 433, 517
Sau96I	GGNCC	3 cut(s)	233, 375, 1124
ScrFI	CCNGG	5 cut(s)	138, 191, 1014, 1062, 1148
SfaNI	GCATC	7 cut(s)	48, 236, 352, 445, 490, 565, 742
SfcI	CTRYAG	2 cut(s)	861, 1047
SinI	GGWCC	1 cut(s)	1124
SmiMI	CAYNNNNRTG	2 cut(s)	840, 1178
SmlI	CTYRAG	4 cut(s)	118, 239, 535, 816
SmoI	CTYRAG	4 cut(s)	118, 239, 535, 816
SpeI	ACTAGT	1 cut(s)	1193
SphI	GCATGC	1 cut(s)	474
Sse9I	AATT	3 cut(s)	360, 370, 627
SsiI	CCGC	3 cut(s)	98, 160, 933
SspI	AATATT	2 cut(s)	181, 421
SspMI	CTAG	3 cut(s)	957, 1082, 1194
StyD4I	CCNGG	5 cut(s)	136, 189, 1012, 1060, 1146
StyI	CCWWGG	2 cut(s)	847, 1173
TaaI	ACNGT	3 cut(s)	784, 914, 1214
TaqI	TCGA	1 cut(s)	702
TasI	AATT	3 cut(s)	360, 370, 627
TatI	WGTACW	3 cut(s)	152, 914, 1251
TauI	GCSGC	2 cut(s)	162, 935
TfiI	GAWTC	3 cut(s)	146, 565, 686
Tru1I	TTAA	5 cut(s)	24, 363, 369, 417, 599
Tru9I	TTAA	5 cut(s)	24, 363, 369, 417, 599
TscAI	CASTG	2 cut(s)	169, 1081
TspDTI	ATGAA	6 cut(s)	173, 546, 762, 978, 1107, 1178
TspRI	CASTG	2 cut(s)	169, 1081
Van91I	CCANNNNNTGG	1 cut(s)	527
VpaK11BI	GGWCC	1 cut(s)	1124
XapI	RAATTY	1 cut(s)	627
XceI	RCATGY	2 cut(s)	159, 474
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1081, 1154
XmiI	GTMKAC	2 cut(s)	622, 776
XspI	CTAG	3 cut(s)	957, 1082, 1194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.