Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0004118

Physical Location & Seq

Genomic Coordinates Forward (+)

8319868 .. 8323648

Gene Structure 3781 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG100900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGAAAGTGTTAATATAGAGCCTATCTTGAGTGGAAATCTGCCTCCTGGGTTTGATTCAAGTACATGCCGCAGTGTGTATGTTGGAAATATTCATCCCCAGGTTACTGATACCCTTCTTCAAGAAGTTTTTGCCAGTACTGGCCCACTTGAGGGATGCAAGCTCATAAGGAAAGATAAGTCATCCTATGGATTTGTTGATTACTATGATCGCCGATCAGCTGCCCTTGCTATTGTTTCTCTCAACGGCAGGCATCTGTTTGGACAGCCAATTAAAGTTAATTGGGCCTATCAAAGTAGTCAGAGGGAGGATACTTCAGGTCATTTTAATATTTTTGTTGGTGATCTTAGCGCTGAGGTTACCGATGCTACATTGTTTGCATGCTTTTCTGTTTACCCCAGTTGTTCAGATGCAAGGGTTATGTGGGATCCAAAAAGTGGGCGCTCAAGGGGCTTTGGGTTTGTTTCATTCCGGAATCAGCAGGATGCCCAAAGTGCCATAAATGACTTAAATGGAAAGTGGCTTGCAAGTAGGCAAATTCGGTGCAACTGGGCTACAAAAGGTGCTGCTTCAAATGATGATAAACAGAGTTCTGATTCTAAAAGTGTGGTCGAGCTGACAAATGGAACATCAGAAGATGGTCAGGAGAAGCCTAATGAAGATGCTCCAGAGAACAATCCTCAGTATACCACAGTTTATGTTGGCAATCTGGCTCCTGAGGTTACTCAAGCTGAACTCCATCGTCATTTCCATGCCCTTGGTGCTGGAACTATAGAAGATGTTAGGGTGCAACGAGATAAAGGTTTTGGGTTTGTGAGATACAGTACACATTCTGAAGCAGCCGCAGCTATCCAGATGGGGAATGCTAGGTTTCTCTGTGGAAAACCAATAAAGTGTTCATGGGGTAGCAAGCCTACTCCACCAGGAACCACCTCCAGCCCTCTCGCTCCACCAGCTGCAGCTTATATGCCAGGTTTTTCAGCCACTGACCTTGTGGCATATGAACGACAAATGGCATATAGTAAAATGGGTGGTCCACAAGCCCTCATGCTTCCCCAGGGTCAGCATGGTATGAAGGCACCCATGGGAATGGGTGCTGGAACTAGTCAGGCGATATATGACGGTGGCTACCAGAATGTAGCAACATCCCAGCAGCTCATGTACTACCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005764 GO:0005773 GO:0006355 GO:0006357 GO:0006915 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0008150 GO:0008219 GO:0008543 GO:0009719 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010494 GO:0010556 GO:0012501 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0035770 GO:0036464 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044344 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070848 GO:0070887 GO:0071310 GO:0071363 GO:0071495 GO:0071774 GO:0080090 GO:1903506 GO:1990904 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

390

Amino Acids

42.35

Weight (kDa)

6.25

Isoelectric Point (pI)

44.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	26 - 92	1.5e-12	RNA recognition motif
RRM_1	PF00076	111 - 181	7.5e-17	RNA recognition motif
RRM_1	PF00076	232 - 298	5.8e-14	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004118)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17370 AT1G17370 AT1G54080 AT3G14100
fragaria_vesca	FvH4_1g09080 FvH4_6g35150
malus_domestica	MD02G1096200.v1.1 MD09G1178500.v1.1 MD17G1148300.v1.1
prunus_persica	Prupe.3G037700_v2.0.a1 Prupe.3G037700_v2.0.a1 Prupe.7G194700_v2.0.a1 Prupe.7G194700_v2.0.a1
pyrus_communis	pycom02g07600 pycom15g19550 pycom17g14160
rosa_chinensis	RchiOBHm_Chr2g0095491 RchiOBHm_Chr2g0146411
rosa_laevigata	RLG00000016572 RLG00000020198
rosa_multiflora	Rmu_sc0006076.1_g000007
rosa_roxburghii	Rroxscaffold_2G00100120 Rroxscaffold_2G00146260
rosa_rugosa	Rorug02G0051600 Rorug02G0394100 Rorug02G0394200
rosa_samantha	Rh2AG450900 Rh2BG100900 Rh2BG463300 Rh2CG437700 Rh2DG472300
rosa_wichuraiana	Rw2G007550 Rw2G036800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1078
AccB7I	CCANNNNNTGG	1 cut(s)	437
AccI	GTMKAC	1 cut(s)	686
AccIII	TCCGGA	1 cut(s)	471
AciI	CCGC	2 cut(s)	70, 843
AclWI	GGATC	2 cut(s)	422, 435
AcsI	RAATTY	1 cut(s)	537
AcuI	CTGAAG	2 cut(s)	300, 855
AfaI	GTAC	4 cut(s)	64, 139, 826, 1163
AfeI	AGCGCT	1 cut(s)	352
AfiI	CCNNNNNNNGG	3 cut(s)	151, 152, 437
AgsI	TTSAA	3 cut(s)	60, 122, 573
AhlI	ACTAGT	1 cut(s)	1103
AjnI	CCWGG	5 cut(s)	46, 99, 922, 970, 1056
AjuI	GAANNNNNNNTTGG	2 cut(s)	880, 912
AluBI	AGCT	8 cut(s)	163, 221, 616, 731, 848, 956, 962, 1156
AluI	AGCT	8 cut(s)	163, 221, 616, 731, 848, 956, 962, 1156
AlwI	GGATC	2 cut(s)	422, 435
AlwNI	CAGNNNCTG	1 cut(s)	986
Aor13HI	TCCGGA	1 cut(s)	471
Aor51HI	AGCGCT	1 cut(s)	352
AoxI	GGCC	2 cut(s)	142, 285
ApeKI	GCWGC	7 cut(s)	221, 566, 839, 845, 956, 959, 1153
ApoI	RAATTY	1 cut(s)	537
AspLEI	GCGC	2 cut(s)	353, 444
AspS9I	GGNCC	3 cut(s)	143, 285, 1034
AsuHPI	GGTGA	1 cut(s)	353
AvaII	GGWCC	1 cut(s)	1034
AxyI	CCTNAGG	1 cut(s)	717
BamHI	GGATCC	1 cut(s)	427
BanI	GGYRCC	1 cut(s)	1078
BbvCI	CCTCAGC	1 cut(s)	354
BbvI	GCAGC	7 cut(s)	208, 553, 851, 857, 943, 971, 1165
BccI	CCATC	3 cut(s)	632, 747, 850
BceAI	ACGGC	1 cut(s)	262
BciT130I	CCWGG	5 cut(s)	48, 101, 924, 972, 1058
BciVI	GTATCC	1 cut(s)	304
BcuI	ACTAGT	1 cut(s)	1103
BfaI	CTAG	2 cut(s)	867, 1104
BfmI	CTRYAG	2 cut(s)	771, 957
BfoI	RGCGCY	2 cut(s)	354, 445
BfuI	GTATCC	1 cut(s)	304
BisI	GCNGC	9 cut(s)	70, 222, 567, 840, 843, 846, 957, 960, 1154
BlsI	GCNGC	9 cut(s)	71, 223, 568, 841, 844, 847, 958, 961, 1155
BmcAI	AGTACT	1 cut(s)	139
Bme1390I	CCNGG	5 cut(s)	48, 101, 924, 972, 1058
Bme18I	GGWCC	1 cut(s)	1034
BmgT120I	GGNCC	3 cut(s)	143, 285, 1034
BmiI	GGNNCC	4 cut(s)	429, 714, 928, 1080
BmrFI	CCNGG	5 cut(s)	48, 101, 924, 972, 1058
BmrI	ACTGGG	2 cut(s)	393, 559
BmsI	GCATC	6 cut(s)	146, 262, 355, 400, 475, 652
BmuI	ACTGGG	2 cut(s)	393, 559
BpmI	CTGGAG	2 cut(s)	651, 919
Bpu10I	CCTNAGC	1 cut(s)	354
BpuEI	CTTGAG	4 cut(s)	49, 170, 430, 711
BsaJI	CCNNGG	6 cut(s)	47, 99, 757, 1056, 1057, 1083
BsaWI	WCCGGW	1 cut(s)	471
Bsc4I	CCNNNNNNNGG	3 cut(s)	151, 152, 437
Bse1I	ACTGG	5 cut(s)	135, 145, 399, 554, 1168
Bse21I	CCTNAGG	1 cut(s)	717
BseAI	TCCGGA	1 cut(s)	471
BseBI	CCWGG	5 cut(s)	48, 101, 924, 972, 1058
BseDI	CCNNGG	6 cut(s)	47, 99, 757, 1056, 1057, 1083
BseGI	GGATG	5 cut(s)	94, 161, 182, 490, 1145
BseLI	CCNNNNNNNGG	3 cut(s)	151, 152, 437
BseMII	CTCAG	3 cut(s)	345, 695, 708
BseNI	ACTGG	5 cut(s)	135, 145, 399, 554, 1168
BseXI	GCAGC	7 cut(s)	208, 553, 851, 857, 943, 971, 1165
BseYI	CCCAGC	1 cut(s)	1149
BshFI	GGCC	2 cut(s)	144, 287
BshNI	GGYRCC	1 cut(s)	1078
BsiSI	CCGG	1 cut(s)	472
BslI	CCNNNNNNNGG	3 cut(s)	151, 152, 437
BsmI	GAATGC	1 cut(s)	868
BsnI	GGCC	2 cut(s)	144, 287
Bsp13I	TCCGGA	1 cut(s)	471
Bsp143I	GATC	4 cut(s)	208, 215, 343, 427
Bsp19I	CCATGG	1 cut(s)	1083
BspACI	CCGC	2 cut(s)	70, 843
BspANI	GGCC	2 cut(s)	144, 287
BspCNI	CTCAG	3 cut(s)	346, 694, 709
BspEI	TCCGGA	1 cut(s)	471
BspLI	GGNNCC	4 cut(s)	429, 714, 928, 1080
BspMAI	CTGCAG	1 cut(s)	961
BspPI	GGATC	2 cut(s)	422, 435
BspT107I	GGYRCC	1 cut(s)	1078
BsrI	ACTGG	5 cut(s)	135, 145, 399, 554, 1168
BssECI	CCNNGG	6 cut(s)	47, 99, 757, 1056, 1057, 1083
BssMI	GATC	4 cut(s)	208, 215, 343, 427
BssNAI	GTATAC	1 cut(s)	687
BssT1I	CCWWGG	2 cut(s)	757, 1083
Bst1107I	GTATAC	1 cut(s)	687
Bst2UI	CCWGG	5 cut(s)	48, 101, 924, 972, 1058
Bst4CI	ACNGT	3 cut(s)	694, 824, 1124
BstC8I	GCNNGC	5 cut(s)	161, 251, 382, 525, 911
BstDEI	CTNAG	4 cut(s)	347, 354, 681, 717
BstDSI	CCRYGG	1 cut(s)	1083
BstEII	GGTNACC	1 cut(s)	358
BstF5I	GGATG	5 cut(s)	94, 161, 182, 490, 1145
BstH2I	RGCGCY	2 cut(s)	354, 445
BstHHI	GCGC	2 cut(s)	353, 444
BstKTI	GATC	4 cut(s)	211, 218, 346, 430
BstMBI	GATC	4 cut(s)	208, 215, 343, 427
BstMWI	GCNNNNNNNGC	6 cut(s)	227, 450, 494, 761, 845, 953
BstNI	CCWGG	5 cut(s)	48, 101, 924, 972, 1058
BstNSI	RCATGY	2 cut(s)	69, 384
BstPI	GGTNACC	1 cut(s)	358
BstSCI	CCNGG	5 cut(s)	46, 99, 922, 970, 1056
BstSFI	CTRYAG	2 cut(s)	771, 957
BstV1I	GCAGC	7 cut(s)	208, 553, 851, 857, 943, 971, 1165
BstX2I	RGATCY	1 cut(s)	427
BstXI	CCANNNNNNTGG	2 cut(s)	758, 1090
BstYI	RGATCY	1 cut(s)	427
BstZ17I	GTATAC	1 cut(s)	687
Bsu36I	CCTNAGG	1 cut(s)	717
BsuI	GTATCC	1 cut(s)	304
BsuRI	GGCC	2 cut(s)	144, 287
BtgI	CCRYGG	1 cut(s)	1083
BtsCI	GGATG	5 cut(s)	94, 161, 182, 490, 1145
BtsI	GCAGTG	1 cut(s)	79
BtsIMutI	CAGTG	2 cut(s)	79, 984
Cac8I	GCNNGC	5 cut(s)	161, 251, 382, 525, 911
CaiI	CAGNNNCTG	1 cut(s)	986
CfoI	GCGC	2 cut(s)	353, 444
Cfr13I	GGNCC	3 cut(s)	143, 285, 1034
Csp6I	GTAC	4 cut(s)	63, 138, 825, 1162
CspCI	CAANNNNNGTGG	2 cut(s)	973, 1008
CviAII	CATG	8 cut(s)	66, 381, 752, 900, 1048, 1067, 1084, 1159
CviQI	GTAC	4 cut(s)	63, 138, 825, 1162
DdeI	CTNAG	4 cut(s)	347, 354, 681, 717
DpnI	GATC	4 cut(s)	210, 217, 345, 429
DpnII	GATC	4 cut(s)	208, 215, 343, 427
Eco130I	CCWWGG	2 cut(s)	757, 1083
Eco47I	GGWCC	1 cut(s)	1034
Eco47III	AGCGCT	1 cut(s)	352
Eco57I	CTGAAG	2 cut(s)	300, 855
Eco81I	CCTNAGG	1 cut(s)	717
Eco91I	GGTNACC	1 cut(s)	358
EcoO65I	GGTNACC	1 cut(s)	358
EcoRII	CCWGG	5 cut(s)	46, 99, 922, 970, 1056
EcoT14I	CCWWGG	2 cut(s)	757, 1083
ErhI	CCWWGG	2 cut(s)	757, 1083
FaeI	CATG	8 cut(s)	69, 384, 755, 903, 1051, 1070, 1087, 1162
FatI	CATG	8 cut(s)	65, 380, 751, 899, 1047, 1066, 1083, 1158
FauNDI	CATATG	1 cut(s)	1000
FblI	GTMKAC	1 cut(s)	686
Fnu4HI	GCNGC	9 cut(s)	70, 222, 567, 840, 843, 846, 957, 960, 1154
FokI	GGATG	5 cut(s)	81, 168, 169, 497, 1132
Fsp4HI	GCNGC	9 cut(s)	70, 222, 567, 840, 843, 846, 957, 960, 1154
FspBI	CTAG	2 cut(s)	867, 1104
GlaI	GCGC	2 cut(s)	352, 443
GluI	GCNGC	9 cut(s)	70, 222, 567, 840, 843, 846, 957, 960, 1154
GsaI	CCCAGC	1 cut(s)	1153
GsuI	CTGGAG	2 cut(s)	651, 919
HaeII	RGCGCY	2 cut(s)	354, 445
HaeIII	GGCC	2 cut(s)	144, 287
HapII	CCGG	1 cut(s)	472
HhaI	GCGC	2 cut(s)	353, 444
Hin1II	CATG	8 cut(s)	69, 384, 755, 903, 1051, 1070, 1087, 1162
Hin6I	GCGC	2 cut(s)	351, 442
HinP1I	GCGC	2 cut(s)	351, 442
HinfI	GANTC	3 cut(s)	56, 475, 596
HpaII	CCGG	1 cut(s)	472
HphI	GGTGA	1 cut(s)	353
Hpy166II	GTNNAC	4 cut(s)	394, 687, 827, 1037
Hpy188I	TCNGA	5 cut(s)	303, 409, 595, 634, 835
Hpy188III	TCNNGA	7 cut(s)	28, 122, 472, 644, 668, 716, 853
Hpy8I	GTNNAC	4 cut(s)	394, 687, 827, 1037
HpyAV	CCTTC	2 cut(s)	125, 1069
HpyCH4III	ACNGT	3 cut(s)	694, 824, 1124
HpyCH4V	TGCA	7 cut(s)	159, 380, 413, 527, 546, 790, 959
HpyF10VI	GCNNNNNNNGC	6 cut(s)	227, 450, 494, 761, 845, 953
HpyF3I	CTNAG	4 cut(s)	347, 354, 681, 717
Hsp92II	CATG	8 cut(s)	69, 384, 755, 903, 1051, 1070, 1087, 1162
HspAI	GCGC	2 cut(s)	351, 442
Kpn2I	TCCGGA	1 cut(s)	471
Kzo9I	GATC	4 cut(s)	208, 215, 343, 427
LmnI	GCTCC	3 cut(s)	670, 718, 952
Lsp1109I	GCAGC	7 cut(s)	208, 553, 851, 857, 943, 971, 1165
LweI	GCATC	6 cut(s)	146, 262, 355, 400, 475, 652
MaeI	CTAG	2 cut(s)	867, 1104
MaeIII	GTNAC	3 cut(s)	103, 358, 721
MalI	GATC	4 cut(s)	210, 217, 345, 429
MboI	GATC	4 cut(s)	208, 215, 343, 427
MboII	GAAGA	4 cut(s)	110, 647, 671, 788
MflI	RGATCY	1 cut(s)	427
MluCI	AATT	3 cut(s)	270, 280, 537
MmeI	TCCRAC	1 cut(s)	64
MroI	TCCGGA	1 cut(s)	471
MseI	TTAA	5 cut(s)	12, 273, 279, 327, 509
MslI	CAYNNNNRTG	2 cut(s)	750, 1088
MspA1I	CMGCKG	2 cut(s)	221, 956
MspI	CCGG	1 cut(s)	472
MspR9I	CCNGG	5 cut(s)	48, 101, 924, 972, 1058
Mva1269I	GAATGC	1 cut(s)	868
MvaI	CCWGG	5 cut(s)	48, 101, 924, 972, 1058
MwoI	GCNNNNNNNGC	6 cut(s)	227, 450, 494, 761, 845, 953
NcoI	CCATGG	1 cut(s)	1083
NdeI	CATATG	1 cut(s)	1000
NdeII	GATC	4 cut(s)	208, 215, 343, 427
NlaIII	CATG	8 cut(s)	69, 384, 755, 903, 1051, 1070, 1087, 1162
NlaIV	GGNNCC	4 cut(s)	429, 714, 928, 1080
NspI	RCATGY	2 cut(s)	69, 384
PaeI	GCATGC	1 cut(s)	384
PasI	CCCWGGG	1 cut(s)	1057
PctI	GAATGC	1 cut(s)	868
PfeI	GAWTC	3 cut(s)	56, 475, 596
PflMI	CCANNNNNTGG	1 cut(s)	437
PkrI	GCNGC	9 cut(s)	71, 223, 568, 841, 844, 847, 958, 961, 1155
Psp6I	CCWGG	5 cut(s)	46, 99, 922, 970, 1056
PspEI	GGTNACC	1 cut(s)	358
PspFI	CCCAGC	1 cut(s)	1149
PspGI	CCWGG	5 cut(s)	46, 99, 922, 970, 1056
PspN4I	GGNNCC	4 cut(s)	429, 714, 928, 1080
PspPI	GGNCC	3 cut(s)	143, 285, 1034
PstI	CTGCAG	1 cut(s)	961
PstNI	CAGNNNCTG	1 cut(s)	986
PsuI	RGATCY	1 cut(s)	427
PvuII	CAGCTG	2 cut(s)	221, 956
RsaI	GTAC	4 cut(s)	64, 139, 826, 1163
RsaNI	GTAC	4 cut(s)	63, 138, 825, 1162
RseI	CAYNNNNRTG	2 cut(s)	750, 1088
SaqAI	TTAA	5 cut(s)	12, 273, 279, 327, 509
SatI	GCNGC	9 cut(s)	70, 222, 567, 840, 843, 846, 957, 960, 1154
Sau3AI	GATC	4 cut(s)	208, 215, 343, 427
Sau96I	GGNCC	3 cut(s)	143, 285, 1034
ScaI	AGTACT	1 cut(s)	139
ScrFI	CCNGG	5 cut(s)	48, 101, 924, 972, 1058
SfaNI	GCATC	6 cut(s)	146, 262, 355, 400, 475, 652
SfcI	CTRYAG	2 cut(s)	771, 957
SinI	GGWCC	1 cut(s)	1034
SmiMI	CAYNNNNRTG	2 cut(s)	750, 1088
SmlI	CTYRAG	4 cut(s)	28, 149, 445, 726
SmoI	CTYRAG	4 cut(s)	28, 149, 445, 726
SpeI	ACTAGT	1 cut(s)	1103
SphI	GCATGC	1 cut(s)	384
Sse9I	AATT	3 cut(s)	270, 280, 537
SsiI	CCGC	2 cut(s)	70, 843
SspI	AATATT	2 cut(s)	91, 331
SspMI	CTAG	2 cut(s)	867, 1104
StyD4I	CCNGG	5 cut(s)	46, 99, 922, 970, 1056
StyI	CCWWGG	2 cut(s)	757, 1083
TaaI	ACNGT	3 cut(s)	694, 824, 1124
TaqI	TCGA	1 cut(s)	612
TasI	AATT	3 cut(s)	270, 280, 537
TatI	WGTACW	4 cut(s)	62, 137, 824, 1161
TauI	GCSGC	2 cut(s)	72, 845
TfiI	GAWTC	3 cut(s)	56, 475, 596
Tru1I	TTAA	5 cut(s)	12, 273, 279, 327, 509
Tru9I	TTAA	5 cut(s)	12, 273, 279, 327, 509
TscAI	CASTG	2 cut(s)	79, 991
TseI	GCWGC	7 cut(s)	221, 566, 839, 845, 956, 959, 1153
TspDTI	ATGAA	6 cut(s)	83, 456, 672, 888, 1017, 1088
TspRI	CASTG	2 cut(s)	79, 991
Van91I	CCANNNNNTGG	1 cut(s)	437
VpaK11BI	GGWCC	1 cut(s)	1034
XapI	RAATTY	1 cut(s)	537
XceI	RCATGY	2 cut(s)	69, 384
XcmI	CCANNNNNNNNNTGG	2 cut(s)	991, 1064
XmiI	GTMKAC	1 cut(s)	686
XspI	CTAG	2 cut(s)	867, 1104
ZrmI	AGTACT	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.