Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004118

Physical Location & Seq

Genomic Coordinates Forward (+)

8415647 .. 8420084

Gene Structure 4438 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47047

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGCAACAGCAGCAGCAGAGGCTTAAACAACAGCAGCAGCAGCAGCAGCAACAAGCCATGATGCAGCAGTCGCTTTACCAGCACCCTGCTCTCTTAGCCCCGCCTCAGATAGAGCCTATCTTGAGTGGAAATCTGCCTCCTGGGTTTGATTCAAGTACATGCCGCAGTGTGTATGTTGGAAATATTCATCCCCAGGTTACTGATACCCTTCTTCAAGAAGTTTTTGCCAGTACTGGTCCACTTGAGGGATGCAAGCTCATAAGGAAAGATAAGTCATCCTATGGATTTGTTGATTACTATGATCGCCGATCAGCTGCCCTTGCTATTGTTTCTCTCAATGGCAGGCATCTGTTTGGACAGCCAATTAAAGTTAATTGGGCCTATCAAAGTAGTCAGAGGGAGGATACTTCAGGTCATTTTAATATTTTTGTTGGTGATCTTAGCGCTGAGGTTACCGATGCTACATTGTTTGCATGCTTTTCTGTTTACCCCAGTTGTTCAGATGCAAGGGTTATGTGGGATCCAAAAAGTGGGCGCTCAAGGGGCTTTGGGTTTGTTTCATTCCGGAATCAGCAGGATGCCCAAAGTGCCATAAATGACTTAAATGGAAAGTGGCTTGCAAGTAGACAAATTCGGTGCAACTGGGCTACAAAAGGTGCTGCTTCAAATGATGATAAACAGAGTTCTGATTCTAAAAGTGTGGTCGAGCTGACAAATGGAACATCAGAAGATGGTCAGGAGAAGCCTAATGAAGATGCTCCAGAGAACAATCCTCAGTATACCACAGTTTATGTTACTCAAGCTGAACTCCATCGTCATTTCCATGCCCTTGGTGCTGGAACTATAGAAGATGTTAGGGTGCAACGAGATAAAGGTTTTGGGTTTGTGAGATACAGTACACATTCTGAAGCAGCCGCAGCTATCCAGATGGGGAATGCTAGGTTTCTCTGTGGAAAACCAATAAAGTGTTCATGGGGTAGCAAGCCTACTCCACCAGGAACCACCTCCAGCCCTCTCGCTCCACCAGCTGCAGCTTATATGCCAGGTTTTTCAGCCACTGACCTTGTGGCATATGAACGACAAATGGCATATAGTAAAATGGGTGGTCCACAAGCCCTCATGCTTCCCCAGGGTCAGCATGGTATGAAGGCACCCATGGGAATGGGTGCTGGAACTAGTCAGGCGATATATGACGGTGGCTACCAGAATGTAGCAACATCCCAGCAGCTCATGTACTACCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005764 GO:0005773 GO:0006355 GO:0006357 GO:0006915 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0008150 GO:0008219 GO:0008543 GO:0009719 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010494 GO:0010556 GO:0012501 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0035770 GO:0036464 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044344 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070848 GO:0070887 GO:0071310 GO:0071363 GO:0071495 GO:0071774 GO:0080090 GO:1903506 GO:1990904 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

414

Amino Acids

45.44

Weight (kDa)

7.61

Isoelectric Point (pI)

49.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	57 - 123	1.6e-12	RNA recognition motif
RRM_1	PF00076	142 - 212	8.3e-17	RNA recognition motif
RRM_1	PF00076	264 - 322	1.1e-08	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004118)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17370 AT1G17370 AT1G54080 AT3G14100
fragaria_vesca	FvH4_1g09080 FvH4_6g35150
malus_domestica	MD02G1096200.v1.1 MD09G1178500.v1.1 MD17G1148300.v1.1
prunus_persica	Prupe.3G037700_v2.0.a1 Prupe.3G037700_v2.0.a1 Prupe.7G194700_v2.0.a1 Prupe.7G194700_v2.0.a1
pyrus_communis	pycom02g07600 pycom15g19550 pycom17g14160
rosa_chinensis	RchiOBHm_Chr2g0095491 RchiOBHm_Chr2g0146411
rosa_laevigata	RLG00000016572 RLG00000020198
rosa_multiflora	Rmu_sc0006076.1_g000007
rosa_roxburghii	Rroxscaffold_2G00100120 Rroxscaffold_2G00146260
rosa_rugosa	Rorug02G0051600 Rorug02G0394100 Rorug02G0394200
rosa_samantha	Rh2AG450900 Rh2BG100900 Rh2BG463300 Rh2CG437700 Rh2DG472300
rosa_wichuraiana	Rw2G007550 Rw2G036800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1150
AccB7I	CCANNNNNTGG	1 cut(s)	530
AccI	GTMKAC	2 cut(s)	625, 779
AccIII	TCCGGA	1 cut(s)	564
AciI	CCGC	3 cut(s)	101, 163, 915
AclWI	GGATC	2 cut(s)	515, 528
AcsI	RAATTY	1 cut(s)	630
AcuI	CTGAAG	2 cut(s)	393, 927
AfaI	GTAC	4 cut(s)	157, 232, 898, 1235
AfeI	AGCGCT	1 cut(s)	445
AfiI	CCNNNNNNNGG	2 cut(s)	245, 530
AgsI	TTSAA	3 cut(s)	153, 215, 666
AhlI	ACTAGT	1 cut(s)	1175
AjnI	CCWGG	5 cut(s)	139, 192, 994, 1042, 1128
AjuI	GAANNNNNNNTTGG	2 cut(s)	952, 984
AluBI	AGCT	8 cut(s)	256, 314, 709, 803, 920, 1028, 1034, 1228
AluI	AGCT	8 cut(s)	256, 314, 709, 803, 920, 1028, 1034, 1228
AlwI	GGATC	2 cut(s)	515, 528
AlwNI	CAGNNNCTG	1 cut(s)	1058
Aor13HI	TCCGGA	1 cut(s)	564
Aor51HI	AGCGCT	1 cut(s)	445
AoxI	GGCC	1 cut(s)	378
ApoI	RAATTY	1 cut(s)	630
AspLEI	GCGC	2 cut(s)	446, 537
AspS9I	GGNCC	3 cut(s)	236, 378, 1106
AsuHPI	GGTGA	1 cut(s)	446
AvaII	GGWCC	2 cut(s)	236, 1106
BamHI	GGATCC	1 cut(s)	520
BanI	GGYRCC	1 cut(s)	1150
BbvCI	CCTCAGC	1 cut(s)	447
BccI	CCATC	3 cut(s)	725, 819, 922
BciT130I	CCWGG	5 cut(s)	141, 194, 996, 1044, 1130
BciVI	GTATCC	1 cut(s)	397
BcuI	ACTAGT	1 cut(s)	1175
BfaI	CTAG	2 cut(s)	939, 1176
BfmI	CTRYAG	2 cut(s)	843, 1029
BfoI	RGCGCY	2 cut(s)	447, 538
BfuI	GTATCC	1 cut(s)	397
BmcAI	AGTACT	1 cut(s)	232
Bme1390I	CCNGG	5 cut(s)	141, 194, 996, 1044, 1130
Bme18I	GGWCC	2 cut(s)	236, 1106
BmgT120I	GGNCC	3 cut(s)	236, 378, 1106
BmiI	GGNNCC	3 cut(s)	522, 1000, 1152
BmrFI	CCNGG	5 cut(s)	141, 194, 996, 1044, 1130
BmrI	ACTGGG	2 cut(s)	486, 652
BmsI	GCATC	7 cut(s)	51, 239, 355, 448, 493, 568, 745
BmuI	ACTGGG	2 cut(s)	486, 652
BpmI	CTGGAG	2 cut(s)	744, 991
Bpu10I	CCTNAGC	1 cut(s)	447
BpuEI	CTTGAG	4 cut(s)	142, 263, 523, 783
BsaJI	CCNNGG	6 cut(s)	140, 192, 829, 1128, 1129, 1155
BsaWI	WCCGGW	1 cut(s)	564
Bsc4I	CCNNNNNNNGG	2 cut(s)	245, 530
Bse1I	ACTGG	5 cut(s)	228, 238, 492, 647, 1240
BseAI	TCCGGA	1 cut(s)	564
BseBI	CCWGG	5 cut(s)	141, 194, 996, 1044, 1130
BseDI	CCNNGG	6 cut(s)	140, 192, 829, 1128, 1129, 1155
BseGI	GGATG	5 cut(s)	187, 254, 275, 583, 1217
BseLI	CCNNNNNNNGG	2 cut(s)	245, 530
BseMII	CTCAG	3 cut(s)	119, 438, 788
BseNI	ACTGG	5 cut(s)	228, 238, 492, 647, 1240
BseYI	CCCAGC	1 cut(s)	1221
BshFI	GGCC	1 cut(s)	380
BshNI	GGYRCC	1 cut(s)	1150
BsiSI	CCGG	1 cut(s)	565
BslI	CCNNNNNNNGG	2 cut(s)	245, 530
BsmI	GAATGC	1 cut(s)	940
BsnI	GGCC	1 cut(s)	380
Bsp13I	TCCGGA	1 cut(s)	564
Bsp143I	GATC	4 cut(s)	301, 308, 436, 520
Bsp19I	CCATGG	1 cut(s)	1155
BspACI	CCGC	3 cut(s)	101, 163, 915
BspANI	GGCC	1 cut(s)	380
BspCNI	CTCAG	3 cut(s)	118, 439, 787
BspEI	TCCGGA	1 cut(s)	564
BspLI	GGNNCC	3 cut(s)	522, 1000, 1152
BspMAI	CTGCAG	1 cut(s)	1033
BspPI	GGATC	2 cut(s)	515, 528
BspT107I	GGYRCC	1 cut(s)	1150
BsrI	ACTGG	5 cut(s)	228, 238, 492, 647, 1240
BssECI	CCNNGG	6 cut(s)	140, 192, 829, 1128, 1129, 1155
BssMI	GATC	4 cut(s)	301, 308, 436, 520
BssNAI	GTATAC	1 cut(s)	780
BssT1I	CCWWGG	2 cut(s)	829, 1155
Bst1107I	GTATAC	1 cut(s)	780
Bst2UI	CCWGG	5 cut(s)	141, 194, 996, 1044, 1130
Bst4CI	ACNGT	3 cut(s)	787, 896, 1196
BstC8I	GCNNGC	5 cut(s)	254, 344, 475, 618, 983
BstDEI	CTNAG	5 cut(s)	94, 105, 440, 447, 774
BstDSI	CCRYGG	1 cut(s)	1155
BstEII	GGTNACC	1 cut(s)	451
BstF5I	GGATG	5 cut(s)	187, 254, 275, 583, 1217
BstH2I	RGCGCY	2 cut(s)	447, 538
BstHHI	GCGC	2 cut(s)	446, 537
BstKTI	GATC	4 cut(s)	304, 311, 439, 523
BstMBI	GATC	4 cut(s)	301, 308, 436, 520
BstNI	CCWGG	5 cut(s)	141, 194, 996, 1044, 1130
BstNSI	RCATGY	2 cut(s)	162, 477
BstPI	GGTNACC	1 cut(s)	451
BstSCI	CCNGG	5 cut(s)	139, 192, 994, 1042, 1128
BstSFI	CTRYAG	2 cut(s)	843, 1029
BstX2I	RGATCY	1 cut(s)	520
BstXI	CCANNNNNNTGG	2 cut(s)	830, 1162
BstYI	RGATCY	1 cut(s)	520
BstZ17I	GTATAC	1 cut(s)	780
BsuI	GTATCC	1 cut(s)	397
BsuRI	GGCC	1 cut(s)	380
BtgI	CCRYGG	1 cut(s)	1155
BtsCI	GGATG	5 cut(s)	187, 254, 275, 583, 1217
BtsI	GCAGTG	1 cut(s)	172
BtsIMutI	CAGTG	2 cut(s)	172, 1056
Cac8I	GCNNGC	5 cut(s)	254, 344, 475, 618, 983
CaiI	CAGNNNCTG	1 cut(s)	1058
CfoI	GCGC	2 cut(s)	446, 537
Cfr13I	GGNCC	3 cut(s)	236, 378, 1106
Csp6I	GTAC	4 cut(s)	156, 231, 897, 1234
CspCI	CAANNNNNGTGG	2 cut(s)	1045, 1080
CviAII	CATG	9 cut(s)	58, 159, 474, 824, 972, 1120, 1139, 1156, 1231
CviQI	GTAC	4 cut(s)	156, 231, 897, 1234
DdeI	CTNAG	5 cut(s)	94, 105, 440, 447, 774
DpnI	GATC	4 cut(s)	303, 310, 438, 522
DpnII	GATC	4 cut(s)	301, 308, 436, 520
Eco130I	CCWWGG	2 cut(s)	829, 1155
Eco47I	GGWCC	2 cut(s)	236, 1106
Eco47III	AGCGCT	1 cut(s)	445
Eco57I	CTGAAG	2 cut(s)	393, 927
Eco91I	GGTNACC	1 cut(s)	451
EcoO65I	GGTNACC	1 cut(s)	451
EcoRII	CCWGG	5 cut(s)	139, 192, 994, 1042, 1128
EcoT14I	CCWWGG	2 cut(s)	829, 1155
ErhI	CCWWGG	2 cut(s)	829, 1155
FaeI	CATG	9 cut(s)	61, 162, 477, 827, 975, 1123, 1142, 1159, 1234
FatI	CATG	9 cut(s)	57, 158, 473, 823, 971, 1119, 1138, 1155, 1230
FauI	CCCGC	1 cut(s)	108
FauNDI	CATATG	1 cut(s)	1072
FblI	GTMKAC	2 cut(s)	625, 779
FokI	GGATG	5 cut(s)	174, 261, 262, 590, 1204
FspBI	CTAG	2 cut(s)	939, 1176
GlaI	GCGC	2 cut(s)	445, 536
GsaI	CCCAGC	1 cut(s)	1225
GsuI	CTGGAG	2 cut(s)	744, 991
HaeII	RGCGCY	2 cut(s)	447, 538
HaeIII	GGCC	1 cut(s)	380
HapII	CCGG	1 cut(s)	565
HhaI	GCGC	2 cut(s)	446, 537
Hin1II	CATG	9 cut(s)	61, 162, 477, 827, 975, 1123, 1142, 1159, 1234
Hin6I	GCGC	2 cut(s)	444, 535
HinP1I	GCGC	2 cut(s)	444, 535
HinfI	GANTC	3 cut(s)	149, 568, 689
HpaII	CCGG	1 cut(s)	565
HphI	GGTGA	1 cut(s)	446
Hpy166II	GTNNAC	6 cut(s)	239, 487, 626, 780, 899, 1109
Hpy188I	TCNGA	6 cut(s)	108, 396, 502, 688, 727, 907
Hpy188III	TCNNGA	6 cut(s)	121, 215, 565, 737, 761, 925
Hpy8I	GTNNAC	6 cut(s)	239, 487, 626, 780, 899, 1109
HpyAV	CCTTC	2 cut(s)	218, 1141
HpyCH4III	ACNGT	3 cut(s)	787, 896, 1196
HpyCH4V	TGCA	9 cut(s)	4, 64, 252, 473, 506, 620, 639, 862, 1031
HpyF3I	CTNAG	5 cut(s)	94, 105, 440, 447, 774
Hsp92II	CATG	9 cut(s)	61, 162, 477, 827, 975, 1123, 1142, 1159, 1234
HspAI	GCGC	2 cut(s)	444, 535
Kpn2I	TCCGGA	1 cut(s)	564
Kzo9I	GATC	4 cut(s)	301, 308, 436, 520
LmnI	GCTCC	2 cut(s)	763, 1024
LweI	GCATC	7 cut(s)	51, 239, 355, 448, 493, 568, 745
MaeI	CTAG	2 cut(s)	939, 1176
MaeIII	GTNAC	3 cut(s)	196, 451, 793
MalI	GATC	4 cut(s)	303, 310, 438, 522
MboI	GATC	4 cut(s)	301, 308, 436, 520
MboII	GAAGA	4 cut(s)	203, 740, 764, 860
MflI	RGATCY	1 cut(s)	520
MluCI	AATT	3 cut(s)	363, 373, 630
MmeI	TCCRAC	1 cut(s)	157
MroI	TCCGGA	1 cut(s)	564
MseI	TTAA	5 cut(s)	24, 366, 372, 420, 602
MslI	CAYNNNNRTG	2 cut(s)	822, 1160
MspA1I	CMGCKG	2 cut(s)	314, 1028
MspI	CCGG	1 cut(s)	565
MspR9I	CCNGG	5 cut(s)	141, 194, 996, 1044, 1130
Mva1269I	GAATGC	1 cut(s)	940
MvaI	CCWGG	5 cut(s)	141, 194, 996, 1044, 1130
NcoI	CCATGG	1 cut(s)	1155
NdeI	CATATG	1 cut(s)	1072
NdeII	GATC	4 cut(s)	301, 308, 436, 520
NlaIII	CATG	9 cut(s)	61, 162, 477, 827, 975, 1123, 1142, 1159, 1234
NlaIV	GGNNCC	3 cut(s)	522, 1000, 1152
NspI	RCATGY	2 cut(s)	162, 477
PaeI	GCATGC	1 cut(s)	477
PasI	CCCWGGG	1 cut(s)	1129
PctI	GAATGC	1 cut(s)	940
PfeI	GAWTC	3 cut(s)	149, 568, 689
PflMI	CCANNNNNTGG	1 cut(s)	530
Psp6I	CCWGG	5 cut(s)	139, 192, 994, 1042, 1128
PspEI	GGTNACC	1 cut(s)	451
PspFI	CCCAGC	1 cut(s)	1221
PspGI	CCWGG	5 cut(s)	139, 192, 994, 1042, 1128
PspN4I	GGNNCC	3 cut(s)	522, 1000, 1152
PspPI	GGNCC	3 cut(s)	236, 378, 1106
PstI	CTGCAG	1 cut(s)	1033
PstNI	CAGNNNCTG	1 cut(s)	1058
PsuI	RGATCY	1 cut(s)	520
PvuII	CAGCTG	2 cut(s)	314, 1028
RsaI	GTAC	4 cut(s)	157, 232, 898, 1235
RsaNI	GTAC	4 cut(s)	156, 231, 897, 1234
RseI	CAYNNNNRTG	2 cut(s)	822, 1160
SaqAI	TTAA	5 cut(s)	24, 366, 372, 420, 602
Sau3AI	GATC	4 cut(s)	301, 308, 436, 520
Sau96I	GGNCC	3 cut(s)	236, 378, 1106
ScaI	AGTACT	1 cut(s)	232
ScrFI	CCNGG	5 cut(s)	141, 194, 996, 1044, 1130
SfaNI	GCATC	7 cut(s)	51, 239, 355, 448, 493, 568, 745
SfcI	CTRYAG	2 cut(s)	843, 1029
SinI	GGWCC	2 cut(s)	236, 1106
SmiMI	CAYNNNNRTG	2 cut(s)	822, 1160
SmlI	CTYRAG	4 cut(s)	121, 242, 538, 798
SmoI	CTYRAG	4 cut(s)	121, 242, 538, 798
SpeI	ACTAGT	1 cut(s)	1175
SphI	GCATGC	1 cut(s)	477
Sse9I	AATT	3 cut(s)	363, 373, 630
SsiI	CCGC	3 cut(s)	101, 163, 915
SspI	AATATT	2 cut(s)	184, 424
SspMI	CTAG	2 cut(s)	939, 1176
StyD4I	CCNGG	5 cut(s)	139, 192, 994, 1042, 1128
StyI	CCWWGG	2 cut(s)	829, 1155
TaaI	ACNGT	3 cut(s)	787, 896, 1196
TaqI	TCGA	1 cut(s)	705
TasI	AATT	3 cut(s)	363, 373, 630
TatI	WGTACW	4 cut(s)	155, 230, 896, 1233
TauI	GCSGC	2 cut(s)	165, 917
TfiI	GAWTC	3 cut(s)	149, 568, 689
Tru1I	TTAA	5 cut(s)	24, 366, 372, 420, 602
Tru9I	TTAA	5 cut(s)	24, 366, 372, 420, 602
TscAI	CASTG	2 cut(s)	172, 1063
TspDTI	ATGAA	6 cut(s)	176, 549, 765, 960, 1089, 1160
TspRI	CASTG	2 cut(s)	172, 1063
Van91I	CCANNNNNTGG	1 cut(s)	530
VpaK11BI	GGWCC	2 cut(s)	236, 1106
XapI	RAATTY	1 cut(s)	630
XceI	RCATGY	2 cut(s)	162, 477
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1063, 1136
XmiI	GTMKAC	2 cut(s)	625, 779
XspI	CTAG	2 cut(s)	939, 1176
ZrmI	AGTACT	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.