Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004118

Physical Location & Seq

Genomic Coordinates Reverse (-)

2726044 .. 2730714

Gene Structure 4671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G037700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGCAGCACCAGAGGCTGAAGCAGCAGCAGCAACAAGCTCTGATGCAACAGGCTCTTCTTCAGCAGCATTCTCTTTACCACCCTGGCCTATTAGCTCCCCCTCAGATAGAGCCAATCCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTGGGGAACATACATACCCAGGTGACTGAACCACTTCTTCAAGAGGTTTTTGCAAGTACCGGTGCTGTTGAAAGCTGCAAACTTATAAGAAAGGAAAAGTCATCGTATGGGTTCATTCACTATTTTGATCGCAGATCAGCTGCCCTTGCAATATTGTCTCTCAATGGCAGACATCTGTTTGGGCAGCCTATCAAAGTAAATTGGGCATATGCTAGTGGTCAAAGGGAGGATACATCAGGCCATTTCAACATTTTTGTTGGTGATCTAAGCCCTGAGGTTACTGATGCTACGTTATTTGCATGCTTTTCTGTTTATCCCAGTTGTTCAGATGCAAGGGTTATGTGGGATCAGAAGACAGGGCGTTCAAGAGGCTTTGGGTTTGTCTCATTCCGAAACCAACAGGATGCTCAAAGTGCGATAAATGACTTAACTGGTAAGGACGATTGGCTTGGAAGTAGACAGATACGTTGCAACTGGGCAACAAAAGGTGCTGGTTCCAATGAGGATAAGCAGAGTTCAGATGCTAAAAGTGTTGTGGAACTTACAAATGGTTCATCAGAAGATGGAAAGGAGACAACAAACAGTGAGGCTCCGGAGAACAACCCTCAATATACTACTGTTTATGTGGGCAATCTTGCTCCAGAGGTCACTCAGCTTGATCTTCATCGGCATTTTCATGCTCTTGGTGTTGGGGTGATCGAGGAGGTTCGGCTCCAGCGTGACAAGGGCTTTGGTTTTGTGAGATTCAGTACCCATGCTGAGGCAGCTCTGGCTATTCAAATGGGAAATACTCAGTCAATTTTGTGTGGTAGACAAATAAAGTGCTCTTGGGGTAGCAAGCCTACTCCACCAGGGACAATTTCAAACCCACTCCCTCCACCAGCAGCAGCAGCACCTTTACCAGGCCTCTCTGCAACAGACCTCTTGGCCTATGAACGGCAACTTGCAATGAGCAAGATGGGTGGTGTCCATGCTCTCATGCACCCCCAGGGGCAGCATCCCCTTAAGCAGGCAGCAATGGGAATGGGCACTGCTGGAGCAAGCCAAGCTATATACGACGGCGGATTCCAGAATGTTGCTGCTGCCCAGCAGCTCATGTACTACCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005764 GO:0005773 GO:0006355 GO:0006357 GO:0006915 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0008150 GO:0008219 GO:0008543 GO:0009719 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010494 GO:0010556 GO:0012501 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0035770 GO:0036464 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044344 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070848 GO:0070887 GO:0071310 GO:0071363 GO:0071495 GO:0071774 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:1990904 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

427

Amino Acids

46.4

Weight (kDa)

6.92

Isoelectric Point (pI)

49.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004118)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17370 AT1G17370 AT1G54080 AT3G14100
fragaria_vesca	FvH4_1g09080 FvH4_6g35150
malus_domestica	MD02G1096200.v1.1 MD09G1178500.v1.1 MD17G1148300.v1.1
prunus_persica	Prupe.3G037700_v2.0.a1 Prupe.3G037700_v2.0.a1 Prupe.7G194700_v2.0.a1 Prupe.7G194700_v2.0.a1
pyrus_communis	pycom02g07600 pycom15g19550 pycom17g14160
rosa_chinensis	RchiOBHm_Chr2g0095491 RchiOBHm_Chr2g0146411
rosa_laevigata	RLG00000016572 RLG00000020198
rosa_multiflora	Rmu_sc0006076.1_g000007
rosa_roxburghii	Rroxscaffold_2G00100120 Rroxscaffold_2G00146260
rosa_rugosa	Rorug02G0051600 Rorug02G0394100 Rorug02G0394200
rosa_samantha	Rh2AG450900 Rh2BG100900 Rh2BG463300 Rh2CG437700 Rh2DG472300
rosa_wichuraiana	Rw2G007550 Rw2G036800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	257
AccI	GTMKAC	2 cut(s)	628, 982
AccIII	TCCGGA	1 cut(s)	763
AciI	CCGC	2 cut(s)	160, 1233
AclWI	GGATC	2 cut(s)	140, 525
AcuI	CTGAAG	2 cut(s)	38, 44
AfaI	GTAC	4 cut(s)	154, 229, 922, 1271
AfiI	CCNNNNNNNGG	4 cut(s)	931, 1073, 1107, 1180
AflII	CTTAAG	1 cut(s)	1175
AgeI	ACCGGT	1 cut(s)	230
AgsI	TTSAA	6 cut(s)	212, 242, 418, 537, 950, 1035
AjnI	CCWGG	6 cut(s)	82, 136, 189, 1021, 1072, 1158
AluBI	AGCT	8 cut(s)	38, 95, 246, 311, 826, 938, 1220, 1264
AluI	AGCT	8 cut(s)	38, 95, 246, 311, 826, 938, 1220, 1264
Alw21I	GWGCWC	1 cut(s)	998
Alw26I	GTCTC	3 cut(s)	333, 559, 737
AlwI	GGATC	2 cut(s)	140, 525
AlwNI	CAGNNNCTG	1 cut(s)	16
Aor13HI	TCCGGA	1 cut(s)	763
AoxI	GGCC	4 cut(s)	85, 409, 1075, 1098
ArsI	GACNNNNNNTTYG	2 cut(s)	884, 916
AsiGI	ACCGGT	1 cut(s)	230
Asp700I	GAANNNNTTC	1 cut(s)	204
AsuHPI	GGTGA	3 cut(s)	205, 443, 877
AxyI	CCTNAGG	1 cut(s)	444
BaeGI	GKGCMC	1 cut(s)	1202
BbsI	GAAGAC	1 cut(s)	530
Bbv12I	GWGCWC	1 cut(s)	998
BbvCI	CCTCAGC	1 cut(s)	930
BccI	CCATC	2 cut(s)	728, 1123
BceAI	ACGGC	2 cut(s)	1124, 1246
BciT130I	CCWGG	6 cut(s)	84, 138, 191, 1023, 1074, 1160
BciVI	GTATCC	1 cut(s)	394
BcoDI	GTCTC	3 cut(s)	333, 559, 737
BfaI	CTAG	1 cut(s)	384
BfrI	CTTAAG	1 cut(s)	1175
BfuI	GTATCC	1 cut(s)	394
BmcAI	AGTACT	1 cut(s)	154
Bme1390I	CCNGG	6 cut(s)	84, 138, 191, 1023, 1074, 1160
BmiI	GGNNCC	3 cut(s)	667, 762, 884
BmrFI	CCNGG	6 cut(s)	84, 138, 191, 1023, 1074, 1160
BmrI	ACTGGG	2 cut(s)	483, 655
BmsI	GCATC	6 cut(s)	33, 445, 490, 565, 682, 1177
BmuI	ACTGGG	2 cut(s)	483, 655
BpiI	GAAGAC	1 cut(s)	530
BpmI	CTGGAG	3 cut(s)	795, 869, 1227
Bpu10I	CCTNAGC	1 cut(s)	930
BsaBI	GATNNNNATC	1 cut(s)	834
BsaJI	CCNNGG	5 cut(s)	82, 189, 1022, 1158, 1159
BsaWI	WCCGGW	2 cut(s)	230, 763
Bsc4I	CCNNNNNNNGG	4 cut(s)	931, 1073, 1107, 1180
Bse118I	RCCGGY	1 cut(s)	230
Bse1I	ACTGG	4 cut(s)	489, 607, 650, 1276
Bse21I	CCTNAGG	1 cut(s)	444
Bse3DI	GCAATG	2 cut(s)	1125, 1194
Bse8I	GATNNNNATC	1 cut(s)	834
BseAI	TCCGGA	1 cut(s)	763
BseBI	CCWGG	6 cut(s)	84, 138, 191, 1023, 1074, 1160
BseDI	CCNNGG	5 cut(s)	82, 189, 1022, 1158, 1159
BseGI	GGATG	2 cut(s)	580, 1168
BseJI	GATNNNNATC	1 cut(s)	834
BseLI	CCNNNNNNNGG	4 cut(s)	931, 1073, 1107, 1180
BseMI	GCAATG	2 cut(s)	1125, 1194
BseMII	CTCAG	5 cut(s)	116, 435, 836, 921, 977
BseNI	ACTGG	4 cut(s)	489, 607, 650, 1276
BseRI	GAGGAG	1 cut(s)	887
BseSI	GKGCMC	1 cut(s)	1202
BseYI	CCCAGC	1 cut(s)	1257
BshFI	GGCC	4 cut(s)	87, 411, 1077, 1100
BshTI	ACCGGT	1 cut(s)	230
BsiHKAI	GWGCWC	1 cut(s)	998
BsiSI	CCGG	2 cut(s)	231, 764
BslFI	GGGAC	1 cut(s)	1039
BslI	CCNNNNNNNGG	4 cut(s)	931, 1073, 1107, 1180
BsmAI	GTCTC	3 cut(s)	333, 559, 737
BsmFI	GGGAC	1 cut(s)	1039
BsmI	GAATGC	1 cut(s)	67
BsnI	GGCC	4 cut(s)	87, 411, 1077, 1100
Bsp1286I	GDGCHC	2 cut(s)	998, 1202
Bsp13I	TCCGGA	1 cut(s)	763
Bsp143I	GATC	7 cut(s)	145, 298, 305, 433, 517, 829, 867
BspACI	CCGC	2 cut(s)	160, 1233
BspANI	GGCC	4 cut(s)	87, 411, 1077, 1100
BspCNI	CTCAG	5 cut(s)	115, 436, 835, 922, 976
BspEI	TCCGGA	1 cut(s)	763
BspLI	GGNNCC	3 cut(s)	667, 762, 884
BspPI	GGATC	2 cut(s)	140, 525
BspQI	GCTCTTC	1 cut(s)	60
BspTI	CTTAAG	1 cut(s)	1175
BsrDI	GCAATG	2 cut(s)	1125, 1194
BsrFI	RCCGGY	1 cut(s)	230
BsrI	ACTGG	4 cut(s)	489, 607, 650, 1276
BssAI	RCCGGY	1 cut(s)	230
BssECI	CCNNGG	5 cut(s)	82, 189, 1022, 1158, 1159
BssMI	GATC	7 cut(s)	145, 298, 305, 433, 517, 829, 867
Bst2UI	CCWGG	6 cut(s)	84, 138, 191, 1023, 1074, 1160
Bst4CI	ACNGT	2 cut(s)	755, 790
Bst6I	CTCTTC	1 cut(s)	60
BstAFI	CTTAAG	1 cut(s)	1175
BstC8I	GCNNGC	4 cut(s)	472, 1010, 1182, 1213
BstDEI	CTNAG	6 cut(s)	102, 437, 444, 822, 930, 963
BstENI	CCTNNNNNAGG	2 cut(s)	1071, 1178
BstF5I	GGATG	2 cut(s)	580, 1168
BstKTI	GATC	7 cut(s)	148, 301, 308, 436, 520, 832, 870
BstMAI	GTCTC	3 cut(s)	333, 559, 737
BstMBI	GATC	7 cut(s)	145, 298, 305, 433, 517, 829, 867
BstMWI	GCNNNNNNNGC	9 cut(s)	13, 22, 28, 317, 584, 935, 941, 1061, 1217
BstNI	CCWGG	6 cut(s)	84, 138, 191, 1023, 1074, 1160
BstNSI	RCATGY	1 cut(s)	474
BstSCI	CCNGG	6 cut(s)	82, 136, 189, 1021, 1072, 1158
BstSLI	GKGCMC	1 cut(s)	1202
BstV2I	GAAGAC	1 cut(s)	530
Bsu36I	CCTNAGG	1 cut(s)	444
BsuI	GTATCC	1 cut(s)	394
BsuRI	GGCC	4 cut(s)	87, 411, 1077, 1100
BtsCI	GGATG	2 cut(s)	580, 1168
BtsI	GCAGTG	2 cut(s)	169, 1200
BtsIMutI	CAGTG	3 cut(s)	169, 760, 1200
Cac8I	GCNNGC	4 cut(s)	472, 1010, 1182, 1213
CaiI	CAGNNNCTG	1 cut(s)	16
Cfr10I	RCCGGY	1 cut(s)	230
Csp6I	GTAC	4 cut(s)	153, 228, 921, 1270
CspAI	ACCGGT	1 cut(s)	230
CspCI	CAANNNNNGTGG	2 cut(s)	1114, 1149
CviAII	CATG	6 cut(s)	471, 848, 926, 1142, 1150, 1267
CviQI	GTAC	4 cut(s)	153, 228, 921, 1270
DdeI	CTNAG	6 cut(s)	102, 437, 444, 822, 930, 963
DpnI	GATC	7 cut(s)	147, 300, 307, 435, 519, 831, 869
DpnII	GATC	7 cut(s)	145, 298, 305, 433, 517, 829, 867
Eam1104I	CTCTTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	60
EciI	GGCGGA	1 cut(s)	1248
Eco147I	AGGCCT	1 cut(s)	1077
Eco57I	CTGAAG	2 cut(s)	38, 44
Eco81I	CCTNAGG	1 cut(s)	444
EcoNI	CCTNNNNNAGG	2 cut(s)	1071, 1178
EcoRII	CCWGG	6 cut(s)	82, 136, 189, 1021, 1072, 1158
FaeI	CATG	6 cut(s)	474, 851, 929, 1145, 1153, 1270
FaqI	GGGAC	1 cut(s)	1039
FatI	CATG	6 cut(s)	470, 847, 925, 1141, 1149, 1266
FauNDI	CATATG	1 cut(s)	379
FblI	GTMKAC	2 cut(s)	628, 982
FokI	GGATG	2 cut(s)	587, 1155
FspBI	CTAG	1 cut(s)	384
GsaI	CCCAGC	1 cut(s)	1261
GsuI	CTGGAG	3 cut(s)	795, 869, 1227
HaeIII	GGCC	4 cut(s)	87, 411, 1077, 1100
HapII	CCGG	2 cut(s)	231, 764
Hin1II	CATG	6 cut(s)	474, 851, 929, 1145, 1153, 1270
HinfI	GANTC	2 cut(s)	915, 1236
HpaII	CCGG	2 cut(s)	231, 764
HphI	GGTGA	3 cut(s)	205, 443, 877
Hpy166II	GTNNAC	2 cut(s)	629, 983
Hpy188I	TCNGA	7 cut(s)	42, 105, 499, 522, 563, 691, 730
Hpy188III	TCNNGA	5 cut(s)	212, 537, 764, 812, 1240
Hpy8I	GTNNAC	2 cut(s)	629, 983
Hpy99I	CGWCG	1 cut(s)	1232
HpyCH4III	ACNGT	2 cut(s)	755, 790
HpyCH4IV	ACGT	2 cut(s)	461, 637
HpyF10VI	GCNNNNNNNGC	9 cut(s)	13, 22, 28, 317, 584, 935, 941, 1061, 1217
HpyF3I	CTNAG	6 cut(s)	102, 437, 444, 822, 930, 963
HpySE526I	ACGT	2 cut(s)	461, 637
Hsp92II	CATG	6 cut(s)	474, 851, 929, 1145, 1153, 1270
Kpn2I	TCCGGA	1 cut(s)	763
Kzo9I	GATC	7 cut(s)	145, 298, 305, 433, 517, 829, 867
LguI	GCTCTTC	1 cut(s)	60
LmnI	GCTCC	5 cut(s)	100, 766, 814, 888, 1208
LweI	GCATC	6 cut(s)	33, 445, 490, 565, 682, 1177
MaeI	CTAG	1 cut(s)	384
MaeII	ACGT	2 cut(s)	461, 637
MaeIII	GTNAC	4 cut(s)	193, 448, 817, 890
MalI	GATC	7 cut(s)	147, 300, 307, 435, 519, 831, 869
MboI	GATC	7 cut(s)	145, 298, 305, 433, 517, 829, 867
MboII	GAAGA	6 cut(s)	47, 50, 200, 535, 743, 824
MhlI	GDGCHC	2 cut(s)	998, 1202
MluCI	AATT	3 cut(s)	370, 969, 1029
MroI	TCCGGA	1 cut(s)	763
MroXI	GAANNNNTTC	1 cut(s)	204
MseI	TTAA	2 cut(s)	599, 1176
MslI	CAYNNNNRTG	1 cut(s)	846
MspA1I	CMGCKG	1 cut(s)	311
MspCI	CTTAAG	1 cut(s)	1175
MspI	CCGG	2 cut(s)	231, 764
MspR9I	CCNGG	6 cut(s)	84, 138, 191, 1023, 1074, 1160
Mva1269I	GAATGC	1 cut(s)	67
MvaI	CCWGG	6 cut(s)	84, 138, 191, 1023, 1074, 1160
MwoI	GCNNNNNNNGC	9 cut(s)	13, 22, 28, 317, 584, 935, 941, 1061, 1217
NdeI	CATATG	1 cut(s)	379
NdeII	GATC	7 cut(s)	145, 298, 305, 433, 517, 829, 867
NlaIII	CATG	6 cut(s)	474, 851, 929, 1145, 1153, 1270
NlaIV	GGNNCC	3 cut(s)	667, 762, 884
NmuCI	GTSAC	3 cut(s)	193, 817, 890
NspI	RCATGY	1 cut(s)	474
PaeI	GCATGC	1 cut(s)	474
PasI	CCCWGGG	1 cut(s)	1159
PceI	AGGCCT	1 cut(s)	1077
PciSI	GCTCTTC	1 cut(s)	60
PcsI	WCGNNNNNNNCGW	1 cut(s)	886
PctI	GAATGC	1 cut(s)	67
PdmI	GAANNNNTTC	1 cut(s)	204
PfeI	GAWTC	2 cut(s)	915, 1236
PinAI	ACCGGT	1 cut(s)	230
PsiI	TTATAA	1 cut(s)	257
Psp6I	CCWGG	6 cut(s)	82, 136, 189, 1021, 1072, 1158
PspFI	CCCAGC	1 cut(s)	1257
PspGI	CCWGG	6 cut(s)	82, 136, 189, 1021, 1072, 1158
PspN4I	GGNNCC	3 cut(s)	667, 762, 884
PstNI	CAGNNNCTG	1 cut(s)	16
PvuII	CAGCTG	1 cut(s)	311
RsaI	GTAC	4 cut(s)	154, 229, 922, 1271
RsaNI	GTAC	4 cut(s)	153, 228, 921, 1270
RseI	CAYNNNNRTG	1 cut(s)	846
SapI	GCTCTTC	1 cut(s)	60
SaqAI	TTAA	2 cut(s)	599, 1176
Sau3AI	GATC	7 cut(s)	145, 298, 305, 433, 517, 829, 867
ScaI	AGTACT	1 cut(s)	154
ScrFI	CCNGG	6 cut(s)	84, 138, 191, 1023, 1074, 1160
SduI	GDGCHC	2 cut(s)	998, 1202
SfaNI	GCATC	6 cut(s)	33, 445, 490, 565, 682, 1177
SmiMI	CAYNNNNRTG	1 cut(s)	846
SmlI	CTYRAG	1 cut(s)	1175
SmoI	CTYRAG	1 cut(s)	1175
SphI	GCATGC	1 cut(s)	474
Sse9I	AATT	3 cut(s)	370, 969, 1029
SseBI	AGGCCT	1 cut(s)	1077
SsiI	CCGC	2 cut(s)	160, 1233
SspI	AATATT	1 cut(s)	324
SspMI	CTAG	1 cut(s)	384
StuI	AGGCCT	1 cut(s)	1077
StyD4I	CCNGG	6 cut(s)	82, 136, 189, 1021, 1072, 1158
TaaI	ACNGT	2 cut(s)	755, 790
TaiI	ACGT	2 cut(s)	464, 640
TaqI	TCGA	1 cut(s)	870
TasI	AATT	3 cut(s)	370, 969, 1029
TatI	WGTACW	2 cut(s)	152, 1269
TauI	GCSGC	1 cut(s)	162
TfiI	GAWTC	2 cut(s)	915, 1236
Tru1I	TTAA	2 cut(s)	599, 1176
Tru9I	TTAA	2 cut(s)	599, 1176
TscAI	CASTG	3 cut(s)	169, 760, 1207
TseFI	GTSAC	3 cut(s)	193, 817, 890
Tsp45I	GTSAC	3 cut(s)	193, 817, 890
TspDTI	ATGAA	5 cut(s)	274, 714, 824, 836, 1119
TspRI	CASTG	3 cut(s)	169, 760, 1207
Vha464I	CTTAAG	1 cut(s)	1175
XagI	CCTNNNNNAGG	2 cut(s)	1071, 1178
XceI	RCATGY	1 cut(s)	474
XmiI	GTMKAC	2 cut(s)	628, 982
XmnI	GAANNNNTTC	1 cut(s)	204
XspI	CTAG	1 cut(s)	384
ZrmI	AGTACT	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.