FvH4_6g35150

Oligouridylate-binding protein 1B-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
27782520 .. 27788045
5526 bp
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UTR
Exon/CDS
Intron
FvH4_6g35150.t1

Sequence Viewer

Length: 1278 bp
ATGCAGCACCAGAGGCTGAAGCAGCAGCAGCAACAGCAAGCTCTGATGCAACAGGCTCTTCTTCAGCAGCATTCTCTCTACCACCCTGGCCTCCTTGCTCCGCCTCAGATAGAGCCAATCCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTTGGTAATATCCATACCCAGGTGACAGAACCACTTCTTCAAGAGGTCTTTGCAAGTACAGGTGCTGTTGAAAGCTGTAAACTTATAAGAAAGGAAAAGTCATCCTATGGGTTTGTCCACTATTTTGATCGCAGATGTGCTGCTCTGGCAATAGTATCTCTCAATGGAAGACAACTGTTTGGACAGCCTATCAAAGTGAATTGGGCATATGCCAGTGGTCAGAGGGAAGATACATCAGGACACTTCAACATTTTTGTAGGTGATCTCAGTCCTGAGGTTACTGATGCCACATTATTTGCTTGCTTTTCTGTATATTCCAGTTGTTCAGATGCAAGAGTTATGTGGGATCAGAAGACAGGGCGCTCTAGAGGCTTTGGATTTGTCTCATTCCGGAACCAACAGGATGCTCAAAGTGCAATTAATGACTTAAATGGTAAGTGGCTTGCCAGTAGACAGATACGTTGCAACTGGGCAACAAAAGGTGCTGGCACCAATGAGGATAAGCAGAGTTCAGATGGCAAGAGTGTGGTGGAACTAACTAATGGTTCTTCAGAAGACGGAAAAGAGCCAACAAACAATGAGGCTCCGGAGAACAACCCCCAATATACCACTGTCTACGTTGGCAATCTTGCTCCGGAGGTCACTCAGCTTGATCTTCACCGTCACTTTTACGCTCTTGGTGTTGGAGTAATTGAAGAGGTTCGGCTTCAGCGTGATAAAGGTTTTGGTTTTGTCAGGTTCAGTACCCATGGTGAGGCAGCTCTCGCTATACAGATGGGAAATACTCAGTCGAATTTGTTTGGAAGACAAATAAAGTGTTCTTGGGGCAGCAAGCCTACTCCACCAGGAACAATCTCAAACCCACTCCCTCCCCCAGCTGCAGCGGTGCCTTTACCAGGCCTCTCTGCAACAGACCTCTTAACCTATGAGCGTCAACTAGCAATGAGCAAGATGGGTGGTGTCCATGCCCTCATGCACCCCCAGGGACAGATCCCTCTTAAGCAGGGGGCCATGGGAATGGGCACAGCTGGAGCAAGCCAGGCTATATACGATGGTGGATTCCAGAGTGTTGCTGCTGCCCAGCAGCTCATGTACTATCAGTAA

Protein Analysis

426

Amino Acids

46.37

Weight (kDa)

7.65

Isoelectric Point (pI)

48.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 57 - 123 8.9e-13 RNA recognition motif
RRM_1 PF00076 142 - 212 2.2e-18 RNA recognition motif
RRM_1 PF00076 263 - 329 1.4e-11 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 260
AccB1I GGYRCC 2 cut(s) 662, 1060
AccI GTMKAC 2 cut(s) 625, 789
AccIII TCCGGA 3 cut(s) 564, 760, 808
AciI CCGC 3 cut(s) 101, 163, 1058
AclWI GGATC 3 cut(s) 143, 528, 1159
AcsI RAATTY 1 cut(s) 967
AcuI CTGAAG 4 cut(s) 38, 47, 708, 866
AfaI GTAC 4 cut(s) 157, 232, 919, 1268
AfiI CCNNNNNNNGG 3 cut(s) 193, 928, 1070
AflII CTTAAG 1 cut(s) 1172
AgsI TTSAA 4 cut(s) 215, 245, 421, 869
AjnI CCWGG 7 cut(s) 85, 139, 192, 1018, 1069, 1155, 1212
AluBI AGCT 7 cut(s) 41, 249, 823, 935, 1052, 1202, 1261
AluI AGCT 7 cut(s) 41, 249, 823, 935, 1052, 1202, 1261
Alw26I GTCTC 1 cut(s) 562
AlwI GGATC 3 cut(s) 143, 528, 1159
AlwNI CAGNNNCTG 2 cut(s) 16, 239
Aor13HI TCCGGA 3 cut(s) 564, 760, 808
AoxI GGCC 3 cut(s) 88, 1072, 1182
ApoI RAATTY 1 cut(s) 967
AseI ATTAAT 1 cut(s) 594
Asp700I GAANNNNTTC 2 cut(s) 207, 873
AspLEI GCGC 1 cut(s) 537
AspS9I GGNCC 1 cut(s) 1182
AsuHPI GGTGA 4 cut(s) 208, 446, 824, 938
AxyI CCTNAGG 1 cut(s) 447
BaeGI GKGCMC 1 cut(s) 1199
BanI GGYRCC 2 cut(s) 662, 1060
BbsI GAAGAC 4 cut(s) 349, 533, 735, 985
BccI CCATC 4 cut(s) 683, 943, 1120, 1220
BciT130I CCWGG 7 cut(s) 87, 141, 194, 1020, 1071, 1157, 1214
BcoDI GTCTC 1 cut(s) 562
BfaI CTAG 2 cut(s) 540, 1112
BfmI CTRYAG 1 cut(s) 1053
BfoI RGCGCY 1 cut(s) 538
BfrI CTTAAG 1 cut(s) 1172
BmcAI AGTACT 1 cut(s) 157
Bme1390I CCNGG 7 cut(s) 87, 141, 194, 1020, 1071, 1157, 1214
BmgT120I GGNCC 1 cut(s) 1182
BmiI GGNNCC 5 cut(s) 569, 664, 759, 1062, 1183
BmrFI CCNGG 7 cut(s) 87, 141, 194, 1020, 1071, 1157, 1214
BmrI ACTGGG 1 cut(s) 652
BmsI GCATC 4 cut(s) 36, 448, 493, 568
BmuI ACTGGG 1 cut(s) 652
BpiI GAAGAC 4 cut(s) 349, 533, 735, 985
BpmI CTGGAG 1 cut(s) 1224
BsaJI CCNNGG 6 cut(s) 85, 192, 922, 1155, 1156, 1185
BsaWI WCCGGW 3 cut(s) 564, 760, 808
Bsc4I CCNNNNNNNGG 3 cut(s) 193, 928, 1070
Bse1I ACTGG 4 cut(s) 387, 492, 621, 647
Bse21I CCTNAGG 1 cut(s) 447
Bse3DI GCAATG 1 cut(s) 1122
BseAI TCCGGA 3 cut(s) 564, 760, 808
BseBI CCWGG 7 cut(s) 87, 141, 194, 1020, 1071, 1157, 1214
BseDI CCNNGG 6 cut(s) 85, 192, 922, 1155, 1156, 1185
BseGI GGATG 2 cut(s) 275, 583
BseLI CCNNNNNNNGG 3 cut(s) 193, 928, 1070
BseMI GCAATG 1 cut(s) 1122
BseMII CTCAG 5 cut(s) 119, 438, 454, 833, 974
BseNI ACTGG 4 cut(s) 387, 492, 621, 647
BseSI GKGCMC 1 cut(s) 1199
BseYI CCCAGC 2 cut(s) 1048, 1254
BshFI GGCC 3 cut(s) 90, 1074, 1184
BshNI GGYRCC 2 cut(s) 662, 1060
BsiSI CCGG 3 cut(s) 565, 761, 809
BslFI GGGAC 1 cut(s) 1173
BslI CCNNNNNNNGG 3 cut(s) 193, 928, 1070
BsmAI GTCTC 1 cut(s) 562
BsmFI GGGAC 1 cut(s) 1173
BsmI GAATGC 1 cut(s) 70
BsnI GGCC 3 cut(s) 90, 1074, 1184
Bsp1286I GDGCHC 1 cut(s) 1199
Bsp13I TCCGGA 3 cut(s) 564, 760, 808
Bsp143I GATC 6 cut(s) 148, 301, 436, 520, 826, 1164
Bsp19I CCATGG 2 cut(s) 922, 1185
BspACI CCGC 3 cut(s) 101, 163, 1058
BspANI GGCC 3 cut(s) 90, 1074, 1184
BspCNI CTCAG 5 cut(s) 118, 439, 453, 832, 973
BspEI TCCGGA 3 cut(s) 564, 760, 808
BspLI GGNNCC 5 cut(s) 569, 664, 759, 1062, 1183
BspMAI CTGCAG 1 cut(s) 1057
BspPI GGATC 3 cut(s) 143, 528, 1159
BspQI GCTCTTC 1 cut(s) 63
BspT107I GGYRCC 2 cut(s) 662, 1060
BspTI CTTAAG 1 cut(s) 1172
BsrDI GCAATG 1 cut(s) 1122
BsrI ACTGG 4 cut(s) 387, 492, 621, 647
BssECI CCNNGG 6 cut(s) 85, 192, 922, 1155, 1156, 1185
BssMI GATC 6 cut(s) 148, 301, 436, 520, 826, 1164
BssT1I CCWWGG 2 cut(s) 922, 1185
Bst2UI CCWGG 7 cut(s) 87, 141, 194, 1020, 1071, 1157, 1214
Bst4CI ACNGT 3 cut(s) 351, 787, 836
Bst6I CTCTTC 2 cut(s) 63, 864
BstAFI CTTAAG 1 cut(s) 1172
BstC8I GCNNGC 6 cut(s) 39, 475, 618, 661, 1007, 1210
BstDEI CTNAG 5 cut(s) 105, 440, 447, 819, 960
BstDSI CCRYGG 2 cut(s) 922, 1185
BstENI CCTNNNNNAGG 1 cut(s) 1068
BstF5I GGATG 2 cut(s) 275, 583
BstH2I RGCGCY 1 cut(s) 538
BstHHI GCGC 1 cut(s) 537
BstKTI GATC 6 cut(s) 151, 304, 439, 523, 829, 1167
BstMAI GTCTC 1 cut(s) 562
BstMBI GATC 6 cut(s) 148, 301, 436, 520, 826, 1164
BstMWI GCNNNNNNNGC 9 cut(s) 13, 22, 28, 34, 320, 543, 587, 938, 1214
BstNI CCWGG 7 cut(s) 87, 141, 194, 1020, 1071, 1157, 1214
BstSCI CCNGG 7 cut(s) 85, 139, 192, 1018, 1069, 1155, 1212
BstSFI CTRYAG 1 cut(s) 1053
BstSLI GKGCMC 1 cut(s) 1199
BstV2I GAAGAC 4 cut(s) 349, 533, 735, 985
BstX2I RGATCY 1 cut(s) 1164
BstXI CCANNNNNNTGG 1 cut(s) 1192
BstYI RGATCY 1 cut(s) 1164
Bsu36I CCTNAGG 1 cut(s) 447
BsuRI GGCC 3 cut(s) 90, 1074, 1184
BtgI CCRYGG 2 cut(s) 922, 1185
BtsCI GGATG 2 cut(s) 275, 583
BtsI GCAGTG 1 cut(s) 172
BtsIMutI CAGTG 3 cut(s) 172, 394, 783
Cac8I GCNNGC 6 cut(s) 39, 475, 618, 661, 1007, 1210
CaiI CAGNNNCTG 2 cut(s) 16, 239
CfoI GCGC 1 cut(s) 537
Cfr13I GGNCC 1 cut(s) 1182
CseI GACGC 1 cut(s) 1094
Csp6I GTAC 4 cut(s) 156, 231, 918, 1267
CspCI CAANNNNNGTGG 4 cut(s) 451, 486, 1111, 1146
CviAII CATG 5 cut(s) 923, 1139, 1147, 1186, 1264
CviQI GTAC 4 cut(s) 156, 231, 918, 1267
DdeI CTNAG 5 cut(s) 105, 440, 447, 819, 960
DpnI GATC 6 cut(s) 150, 303, 438, 522, 828, 1166
DpnII GATC 6 cut(s) 148, 301, 436, 520, 826, 1164
Eam1104I CTCTTC 2 cut(s) 63, 864
EarI CTCTTC 2 cut(s) 63, 864
EciI GGCGGA 1 cut(s) 90
Eco130I CCWWGG 2 cut(s) 922, 1185
Eco147I AGGCCT 1 cut(s) 1074
Eco57I CTGAAG 4 cut(s) 38, 47, 708, 866
Eco81I CCTNAGG 1 cut(s) 447
EcoNI CCTNNNNNAGG 1 cut(s) 1068
EcoRII CCWGG 7 cut(s) 85, 139, 192, 1018, 1069, 1155, 1212
EcoT14I CCWWGG 2 cut(s) 922, 1185
ErhI CCWWGG 2 cut(s) 922, 1185
FaeI CATG 5 cut(s) 926, 1142, 1150, 1189, 1267
FaqI GGGAC 1 cut(s) 1173
FatI CATG 5 cut(s) 922, 1138, 1146, 1185, 1263
FauNDI CATATG 1 cut(s) 382
FblI GTMKAC 2 cut(s) 625, 789
FokI GGATG 2 cut(s) 262, 590
FspBI CTAG 2 cut(s) 540, 1112
GlaI GCGC 1 cut(s) 536
GsaI CCCAGC 2 cut(s) 1052, 1258
GsuI CTGGAG 1 cut(s) 1224
HaeII RGCGCY 1 cut(s) 538
HaeIII GGCC 3 cut(s) 90, 1074, 1184
HapII CCGG 3 cut(s) 565, 761, 809
HgaI GACGC 1 cut(s) 1094
HhaI GCGC 1 cut(s) 537
Hin1II CATG 5 cut(s) 926, 1142, 1150, 1189, 1267
Hin6I GCGC 1 cut(s) 535
HinP1I GCGC 1 cut(s) 535
HincII GTYRAC 1 cut(s) 1109
HindII GTYRAC 1 cut(s) 1109
HinfI GANTC 1 cut(s) 1233
HpaII CCGG 3 cut(s) 565, 761, 809
HphI GGTGA 4 cut(s) 208, 446, 824, 938
Hpy166II GTNNAC 5 cut(s) 254, 292, 626, 790, 1109
Hpy188I TCNGA 7 cut(s) 45, 108, 396, 502, 525, 688, 727
Hpy188III TCNNGA 8 cut(s) 215, 411, 446, 540, 565, 761, 809, 1237
Hpy8I GTNNAC 5 cut(s) 254, 292, 626, 790, 1109
HpyCH4III ACNGT 3 cut(s) 351, 787, 836
HpyCH4IV ACGT 2 cut(s) 634, 792
HpyCH4V TGCA 9 cut(s) 4, 49, 227, 506, 590, 639, 1055, 1082, 1150
HpyF10VI GCNNNNNNNGC 9 cut(s) 13, 22, 28, 34, 320, 543, 587, 938, 1214
HpyF3I CTNAG 5 cut(s) 105, 440, 447, 819, 960
HpySE526I ACGT 2 cut(s) 634, 792
Hsp92II CATG 5 cut(s) 926, 1142, 1150, 1189, 1267
HspAI GCGC 1 cut(s) 535
Kpn2I TCCGGA 3 cut(s) 564, 760, 808
Kzo9I GATC 6 cut(s) 148, 301, 436, 520, 826, 1164
LguI GCTCTTC 1 cut(s) 63
LmnI GCTCC 4 cut(s) 103, 763, 811, 1205
LweI GCATC 4 cut(s) 36, 448, 493, 568
MaeI CTAG 2 cut(s) 540, 1112
MaeII ACGT 2 cut(s) 634, 792
MaeIII GTNAC 4 cut(s) 196, 451, 814, 836
MalI GATC 6 cut(s) 150, 303, 438, 522, 828, 1166
MboI GATC 6 cut(s) 148, 301, 436, 520, 826, 1164
MflI RGATCY 1 cut(s) 1164
MhlI GDGCHC 1 cut(s) 1199
MluCI AATT 4 cut(s) 373, 591, 864, 967
MmeI TCCRAC 1 cut(s) 838
MroI TCCGGA 3 cut(s) 564, 760, 808
MroXI GAANNNNTTC 2 cut(s) 207, 873
MseI TTAA 4 cut(s) 594, 602, 1094, 1173
MslI CAYNNNNRTG 1 cut(s) 1190
MspA1I CMGCKG 3 cut(s) 1052, 1058, 1202
MspCI CTTAAG 1 cut(s) 1172
MspI CCGG 3 cut(s) 565, 761, 809
MspR9I CCNGG 7 cut(s) 87, 141, 194, 1020, 1071, 1157, 1214
Mva1269I GAATGC 1 cut(s) 70
MvaI CCWGG 7 cut(s) 87, 141, 194, 1020, 1071, 1157, 1214
MwoI GCNNNNNNNGC 9 cut(s) 13, 22, 28, 34, 320, 543, 587, 938, 1214
NcoI CCATGG 2 cut(s) 922, 1185
NdeI CATATG 1 cut(s) 382
NdeII GATC 6 cut(s) 148, 301, 436, 520, 826, 1164
NlaIII CATG 5 cut(s) 926, 1142, 1150, 1189, 1267
NlaIV GGNNCC 5 cut(s) 569, 664, 759, 1062, 1183
NmuCI GTSAC 3 cut(s) 196, 814, 836
PasI CCCWGGG 1 cut(s) 1156
PceI AGGCCT 1 cut(s) 1074
PciSI GCTCTTC 1 cut(s) 63
PcsI WCGNNNNNNNCGW 1 cut(s) 883
PctI GAATGC 1 cut(s) 70
PdmI GAANNNNTTC 2 cut(s) 207, 873
PfeI GAWTC 1 cut(s) 1233
PshBI ATTAAT 1 cut(s) 594
PsiI TTATAA 1 cut(s) 260
Psp6I CCWGG 7 cut(s) 85, 139, 192, 1018, 1069, 1155, 1212
PspFI CCCAGC 2 cut(s) 1048, 1254
PspGI CCWGG 7 cut(s) 85, 139, 192, 1018, 1069, 1155, 1212
PspN4I GGNNCC 5 cut(s) 569, 664, 759, 1062, 1183
PspPI GGNCC 1 cut(s) 1182
PstI CTGCAG 1 cut(s) 1057
PstNI CAGNNNCTG 2 cut(s) 16, 239
PsuI RGATCY 1 cut(s) 1164
PvuII CAGCTG 2 cut(s) 1052, 1202
RsaI GTAC 4 cut(s) 157, 232, 919, 1268
RsaNI GTAC 4 cut(s) 156, 231, 918, 1267
RseI CAYNNNNRTG 1 cut(s) 1190
SapI GCTCTTC 1 cut(s) 63
SaqAI TTAA 4 cut(s) 594, 602, 1094, 1173
Sau3AI GATC 6 cut(s) 148, 301, 436, 520, 826, 1164
Sau96I GGNCC 1 cut(s) 1182
ScaI AGTACT 1 cut(s) 157
ScrFI CCNGG 7 cut(s) 87, 141, 194, 1020, 1071, 1157, 1214
SduI GDGCHC 1 cut(s) 1199
SfaNI GCATC 4 cut(s) 36, 448, 493, 568
SfcI CTRYAG 1 cut(s) 1053
SmiMI CAYNNNNRTG 1 cut(s) 1190
SmlI CTYRAG 1 cut(s) 1172
SmoI CTYRAG 1 cut(s) 1172
Sse9I AATT 4 cut(s) 373, 591, 864, 967
SseBI AGGCCT 1 cut(s) 1074
SsiI CCGC 3 cut(s) 101, 163, 1058
SspMI CTAG 2 cut(s) 540, 1112
StuI AGGCCT 1 cut(s) 1074
StyD4I CCNGG 7 cut(s) 85, 139, 192, 1018, 1069, 1155, 1212
StyI CCWWGG 2 cut(s) 922, 1185
TaaI ACNGT 3 cut(s) 351, 787, 836
TaiI ACGT 2 cut(s) 637, 795
TaqI TCGA 1 cut(s) 965
TasI AATT 4 cut(s) 373, 591, 864, 967
TatI WGTACW 3 cut(s) 155, 230, 1266
TauI GCSGC 1 cut(s) 165
TfiI GAWTC 1 cut(s) 1233
Tru1I TTAA 4 cut(s) 594, 602, 1094, 1173
Tru9I TTAA 4 cut(s) 594, 602, 1094, 1173
TscAI CASTG 3 cut(s) 172, 394, 790
TseFI GTSAC 3 cut(s) 196, 814, 836
Tsp45I GTSAC 3 cut(s) 196, 814, 836
TspGWI ACGGA 1 cut(s) 747
TspRI CASTG 3 cut(s) 172, 394, 790
Vha464I CTTAAG 1 cut(s) 1172
VspI ATTAAT 1 cut(s) 594
XagI CCTNNNNNAGG 1 cut(s) 1068
XapI RAATTY 1 cut(s) 967
XbaI TCTAGA 1 cut(s) 539
XmiI GTMKAC 2 cut(s) 625, 789
XmnI GAANNNNTTC 2 cut(s) 207, 873
XspI CTAG 2 cut(s) 540, 1112
ZrmI AGTACT 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.