AT1G19360

Plays a role in the arabinosylation of cell wall components. Involved in the arabinosylation of extensin proteins in root hair cells. Extensins are structural glycoproteins present in cell walls and its arabinosylation is important for root hair cell development

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
6690399 .. 6692566
2168 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G19360.2

Sequence Viewer

Length: 1287 bp
ATGGCGGGTCGTAGAGATAGAAGCCAACAACTCCGTGGATCTCGAATTGCGATCGCCATCCTCATCGGTATCTTTATCGGTTGCGTGTGCGCCGTTCTGTTCCCTTACGGGTTCTTCAACTCAAGCTCATCTCTCAAAGCAAGCGAACATCTTTCGAAGTCAAGCAACCAGGTTGGATCATCAGCTTGTGAATCGCCAGAACGAGTGAAAATGCTAAAATCAGACTTTGTAACTCTCTCAGAGAAGAATGCAGAGTTAAAGAAGCAGGTCAGAGAGTTAACAGAGAAGCTACGGTTAGCGGAGCAAGGATCAGACAATGCAAGAAAACAGGTTCTAGCATTGGGAACACAGATCAAGGCTGGTCCTTTTGGAACTGTCAAGAGTCTGAGAACTAATCCAACTATTCTTCCTGATGAATCTATAAACCCAAGATTGGCAAAGATTCTAGAGGAGATTGCTGTTGATAAAGAGGTAATTGTAGCTCTTGCAAACGCAAATGTGAAAGCAATGTTGGAGGTTCAGATTGCTAGCATTAAGAGAGTGGGTATAACAAACTATCTGGTTGTTGCTTTGGACGATTACATAGAGAATTTATGTAAAGAGAACGATGTTGCGTATTACAAGAGAGATCCAGACAAGGACGTGGATACTGTTGGGAAAACTGGAGGTAACCATGCTGTCTCTGGATTGAAATTCCGTGTGTTAAGAGAGTTCTTGCAACTCGGTTATGGTGTTCTTCTCTCGGATGTGGACATTGTCTTCTTGCAGAACCCATTTAGTCATCTATACAGAGACTCTGATGTGGAGTCAATGAGTGATGGCCATGACAATCATACGGCTTATGGGTTCAATGATGTGTTTGATGAACCAGCCATGGGATGGGCTCGGTATGCTCACACTATGAGGATATGGGTTTTCAATTCCGGGTTTTTCTATTTGAGGCCTACAATTCCATCAATCGAGCTGCTTGATCGCGTGGCAGATAGACTCTCTAAGGCTAAAGTGTGGGACCAAGCGGTTTTCAACGAGGAACTGTTTTATCCTTCACATCCTGAGTACACTGCGCTACATGCATCCAAGAGAGTCATGGATATGTATGAGTTTATGAACAGTAAGGTCCTTTTCAAGACTGTAAGAAAGAATCATGAACTGAAGAAGAAAGTGAAACCAGTGATTGTTCATGTGAATTACCATCCAGATAAGCTCAATAGAATGCAAGCCGTCGTTGAGTTCTACGTTAACGGTAAGCAAGACGCGCTTGATAGCTTCCCCGATGGTTCTGAATGA

Protein Analysis

428

Amino Acids

48.25

Weight (kDa)

8.15

Isoelectric Point (pI)

32.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleotid_trans PF03407 183 - 405 2e-54 Nucleotide-diphospho-sugar transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 256
AccB7I CCANNNNNTGG 1 cut(s) 879
AccII CGCG 2 cut(s) 975, 1256
AciI CCGC 3 cut(s) 5, 299, 1016
AclWI GGATC 4 cut(s) 46, 184, 316, 623
AcoI YGGCCR 1 cut(s) 820
AcsI RAATTY 2 cut(s) 589, 692
AcuI CTGAAG 1 cut(s) 1172
AfaI GTAC 1 cut(s) 1058
AfiI CCNNNNNNNGG 3 cut(s) 433, 875, 879
AgsI TTSAA 6 cut(s) 118, 691, 850, 919, 1024, 1126
AjiI CACGTC 1 cut(s) 643
AjnI CCWGG 1 cut(s) 168
AjuI GAANNNNNNNTTGG 2 cut(s) 494, 526
AluBI AGCT 7 cut(s) 126, 185, 289, 482, 964, 1204, 1266
AluI AGCT 7 cut(s) 126, 185, 289, 482, 964, 1204, 1266
Alw26I GTCTC 2 cut(s) 685, 786
AlwI GGATC 4 cut(s) 46, 184, 316, 623
AoxI GGCC 2 cut(s) 820, 941
ApeKI GCWGC 1 cut(s) 964
ApoI RAATTY 2 cut(s) 589, 692
AsiSI GCGATCGC 1 cut(s) 54
AspLEI GCGC 3 cut(s) 92, 1066, 1258
AspS9I GGNCC 3 cut(s) 362, 1009, 1117
AsuC2I CCSGG 1 cut(s) 925
AsuII TTCGAA 1 cut(s) 155
AsuNHI GCTAGC 1 cut(s) 527
AvaII GGWCC 3 cut(s) 362, 1009, 1117
BalI TGGCCA 1 cut(s) 822
BanII GRGCYC 1 cut(s) 886
BbsI GAAGAC 1 cut(s) 751
BbvI GCAGC 1 cut(s) 951
BccI CCATC 6 cut(s) 65, 812, 873, 961, 1200, 1268
BceAI ACGGC 3 cut(s) 77, 852, 1205
BciT130I CCWGG 1 cut(s) 170
BciVI GTATCC 1 cut(s) 640
BcnI CCSGG 1 cut(s) 925
BcoDI GTCTC 2 cut(s) 685, 786
BfaI CTAG 3 cut(s) 335, 446, 528
BfuAI ACCTGC 1 cut(s) 256
BfuI GTATCC 1 cut(s) 640
BisI GCNGC 1 cut(s) 965
BlsI GCNGC 1 cut(s) 966
Bme1390I CCNGG 2 cut(s) 170, 925
Bme18I GGWCC 3 cut(s) 362, 1009, 1117
BmgBI CACGTC 1 cut(s) 643
BmgT120I GGNCC 3 cut(s) 362, 1009, 1117
BmiI GGNNCC 1 cut(s) 1010
BmrFI CCNGG 2 cut(s) 170, 925
BmsI GCATC 1 cut(s) 1082
BmtI GCTAGC 1 cut(s) 531
BpiI GAAGAC 1 cut(s) 751
BpmI CTGGAG 1 cut(s) 684
Bpu14I TTCGAA 1 cut(s) 155
BpuEI CTTGAG 1 cut(s) 106
BpuMI CCSGG 1 cut(s) 925
BsaBI GATNNNNATC 1 cut(s) 56
BsaJI CCNNGG 2 cut(s) 34, 873
Bsc4I CCNNNNNNNGG 3 cut(s) 433, 875, 879
Bse1I ACTGG 2 cut(s) 667, 1169
Bse3DI GCAATG 1 cut(s) 513
Bse8I GATNNNNATC 1 cut(s) 56
BseBI CCWGG 1 cut(s) 170
BseDI CCNNGG 2 cut(s) 34, 873
BseGI GGATG 6 cut(s) 57, 751, 884, 1048, 1073, 1192
BseJI GATNNNNATC 1 cut(s) 56
BseLI CCNNNNNNNGG 3 cut(s) 433, 875, 879
BseMI GCAATG 1 cut(s) 513
BseMII CTCAG 3 cut(s) 252, 377, 1044
BseNI ACTGG 2 cut(s) 667, 1169
BseRI GAGGAG 1 cut(s) 464
BseXI GCAGC 1 cut(s) 951
Bsh1236I CGCG 2 cut(s) 975, 1256
Bsh1285I CGRYCG 1 cut(s) 54
BshFI GGCC 2 cut(s) 822, 943
BsiEI CGRYCG 1 cut(s) 54
BsiSI CCGG 1 cut(s) 924
BslFI GGGAC 1 cut(s) 1022
BslI CCNNNNNNNGG 3 cut(s) 433, 875, 879
BsmAI GTCTC 2 cut(s) 685, 786
BsmFI GGGAC 1 cut(s) 1022
BsmI GAATGC 2 cut(s) 253, 1218
BsnI GGCC 2 cut(s) 822, 943
Bsp119I TTCGAA 1 cut(s) 155
Bsp1286I GDGCHC 1 cut(s) 886
Bsp143I GATC 7 cut(s) 38, 51, 176, 308, 351, 628, 970
Bsp19I CCATGG 1 cut(s) 873
BspACI CCGC 3 cut(s) 5, 299, 1016
BspANI GGCC 2 cut(s) 822, 943
BspCNI CTCAG 3 cut(s) 251, 378, 1045
BspFNI CGCG 2 cut(s) 975, 1256
BspHI TCATGA 1 cut(s) 1144
BspLI GGNNCC 1 cut(s) 1010
BspMI ACCTGC 1 cut(s) 256
BspOI GCTAGC 1 cut(s) 531
BspPI GGATC 4 cut(s) 46, 184, 316, 623
BspT104I TTCGAA 1 cut(s) 155
BsrDI GCAATG 1 cut(s) 513
BsrI ACTGG 2 cut(s) 667, 1169
BssECI CCNNGG 2 cut(s) 34, 873
BssMI GATC 7 cut(s) 38, 51, 176, 308, 351, 628, 970
BssT1I CCWWGG 1 cut(s) 873
Bst2UI CCWGG 1 cut(s) 170
Bst4CI ACNGT 7 cut(s) 294, 376, 652, 1035, 1112, 1132, 1244
BstBI TTCGAA 1 cut(s) 155
BstC8I GCNNGC 3 cut(s) 142, 529, 1218
BstDEI CTNAG 4 cut(s) 238, 386, 993, 1053
BstDSI CCRYGG 2 cut(s) 34, 873
BstEII GGTNACC 1 cut(s) 668
BstF5I GGATG 6 cut(s) 57, 751, 884, 1048, 1073, 1192
BstFNI CGCG 2 cut(s) 975, 1256
BstHHI GCGC 3 cut(s) 92, 1066, 1258
BstKTI GATC 7 cut(s) 41, 54, 179, 311, 354, 631, 973
BstMAI GTCTC 2 cut(s) 685, 786
BstMBI GATC 7 cut(s) 38, 51, 176, 308, 351, 628, 970
BstMCI CGRYCG 1 cut(s) 54
BstMWI GCNNNNNNNGC 3 cut(s) 890, 1070, 1255
BstNI CCWGG 1 cut(s) 170
BstNSI RCATGY 1 cut(s) 1073
BstPI GGTNACC 1 cut(s) 668
BstSCI CCNGG 2 cut(s) 168, 923
BstUI CGCG 2 cut(s) 975, 1256
BstV1I GCAGC 1 cut(s) 951
BstV2I GAAGAC 1 cut(s) 751
BstX2I RGATCY 2 cut(s) 38, 628
BstYI RGATCY 2 cut(s) 38, 628
BsuI GTATCC 1 cut(s) 640
BsuRI GGCC 2 cut(s) 822, 943
BtgI CCRYGG 2 cut(s) 34, 873
BtrI CACGTC 1 cut(s) 643
BtsCI GGATG 6 cut(s) 57, 751, 884, 1048, 1073, 1192
BtsI GCAGTG 1 cut(s) 1059
BtsIMutI CAGTG 2 cut(s) 1059, 1176
BveI ACCTGC 1 cut(s) 256
Cac8I GCNNGC 3 cut(s) 142, 529, 1218
CciI TCATGA 1 cut(s) 1144
CfoI GCGC 3 cut(s) 92, 1066, 1258
Cfr13I GGNCC 3 cut(s) 362, 1009, 1117
CseI GACGC 1 cut(s) 1262
CsiI ACCWGGT 1 cut(s) 168
Csp6I GTAC 1 cut(s) 1057
CviAII CATG 7 cut(s) 674, 824, 874, 1070, 1087, 1145, 1181
CviQI GTAC 1 cut(s) 1057
DdeI CTNAG 4 cut(s) 238, 386, 993, 1053
DpnI GATC 7 cut(s) 40, 53, 178, 310, 353, 630, 972
DpnII GATC 7 cut(s) 38, 51, 176, 308, 351, 628, 970
EaeI YGGCCR 1 cut(s) 820
Eco130I CCWWGG 1 cut(s) 873
Eco147I AGGCCT 1 cut(s) 943
Eco24I GRGCYC 1 cut(s) 886
Eco47I GGWCC 3 cut(s) 362, 1009, 1117
Eco57I CTGAAG 1 cut(s) 1172
Eco91I GGTNACC 1 cut(s) 668
EcoO109I RGGNCCY 1 cut(s) 1117
EcoO65I GGTNACC 1 cut(s) 668
EcoRII CCWGG 1 cut(s) 168
EcoT14I CCWWGG 1 cut(s) 873
EcoT22I ATGCAT 1 cut(s) 1075
EcoT38I GRGCYC 1 cut(s) 886
ErhI CCWWGG 1 cut(s) 873
FaeI CATG 7 cut(s) 677, 827, 877, 1073, 1090, 1148, 1184
FalI AAGNNNNNCTT 2 cut(s) 1242, 1274
FaqI GGGAC 1 cut(s) 1022
FatI CATG 7 cut(s) 673, 823, 873, 1069, 1086, 1144, 1180
Fnu4HI GCNGC 1 cut(s) 965
FokI GGATG 6 cut(s) 44, 758, 891, 1035, 1060, 1179
FriOI GRGCYC 1 cut(s) 886
Fsp4HI GCNGC 1 cut(s) 965
FspBI CTAG 3 cut(s) 335, 446, 528
GlaI GCGC 3 cut(s) 91, 1065, 1257
GluI GCNGC 1 cut(s) 965
GsuI CTGGAG 1 cut(s) 684
HaeIII GGCC 2 cut(s) 822, 943
HapII CCGG 1 cut(s) 924
HgaI GACGC 1 cut(s) 1262
HhaI GCGC 3 cut(s) 92, 1066, 1258
Hin1II CATG 7 cut(s) 677, 827, 877, 1073, 1090, 1148, 1184
Hin6I GCGC 3 cut(s) 90, 1064, 1256
HinP1I GCGC 3 cut(s) 90, 1064, 1256
HincII GTYRAC 2 cut(s) 279, 1240
HindII GTYRAC 2 cut(s) 279, 1240
HinfI GANTC 9 cut(s) 191, 382, 416, 442, 794, 806, 987, 1083, 1141
HpaI GTTAAC 2 cut(s) 279, 1240
HpaII CCGG 1 cut(s) 924
Hpy166II GTNNAC 4 cut(s) 279, 751, 1059, 1240
Hpy188I TCNGA 9 cut(s) 223, 241, 272, 313, 387, 522, 745, 799, 1282
Hpy8I GTNNAC 4 cut(s) 279, 751, 1059, 1240
Hpy99I CGWCG 1 cut(s) 1226
HpyAV CCTTC 1 cut(s) 1053
HpyCH4III ACNGT 7 cut(s) 294, 376, 652, 1035, 1112, 1132, 1244
HpyCH4IV ACGT 2 cut(s) 642, 1236
HpyCH4V TGCA 7 cut(s) 251, 320, 488, 718, 766, 1073, 1216
HpyF10VI GCNNNNNNNGC 3 cut(s) 890, 1070, 1255
HpyF3I CTNAG 4 cut(s) 238, 386, 993, 1053
HpySE526I ACGT 2 cut(s) 642, 1236
Hsp92II CATG 7 cut(s) 677, 827, 877, 1073, 1090, 1148, 1184
HspAI GCGC 3 cut(s) 90, 1064, 1256
KspAI GTTAAC 2 cut(s) 279, 1240
Kzo9I GATC 7 cut(s) 38, 51, 176, 308, 351, 628, 970
LmnI GCTCC 1 cut(s) 301
Lsp1109I GCAGC 1 cut(s) 951
LweI GCATC 1 cut(s) 1082
MabI ACCWGGT 1 cut(s) 168
MaeI CTAG 3 cut(s) 335, 446, 528
MaeII ACGT 2 cut(s) 642, 1236
MaeIII GTNAC 2 cut(s) 229, 668
MalI GATC 7 cut(s) 40, 53, 178, 310, 353, 630, 972
MboI GATC 7 cut(s) 38, 51, 176, 308, 351, 628, 970
MboII GAAGA 7 cut(s) 106, 256, 398, 728, 751, 1165, 1168
MflI RGATCY 2 cut(s) 38, 628
MhlI GDGCHC 1 cut(s) 886
MlsI TGGCCA 1 cut(s) 822
MluCI AATT 7 cut(s) 45, 474, 589, 692, 919, 948, 1186
MluNI TGGCCA 1 cut(s) 822
MlyI GAGTC 5 cut(s) 391, 788, 815, 981, 1092
MmeI TCCRAC 3 cut(s) 154, 422, 492
MnlI CCTC 8 cut(s) 71, 442, 463, 508, 659, 897, 933, 1021
Mox20I TGGCCA 1 cut(s) 822
Mph1103I ATGCAT 1 cut(s) 1075
MscI TGGCCA 1 cut(s) 822
MseI TTAA 5 cut(s) 257, 278, 534, 704, 1239
MslI CAYNNNNRTG 1 cut(s) 1091
Msp20I TGGCCA 1 cut(s) 822
MspI CCGG 1 cut(s) 924
MspR9I CCNGG 2 cut(s) 170, 925
Mva1269I GAATGC 2 cut(s) 253, 1218
MvaI CCWGG 1 cut(s) 170
MvnI CGCG 2 cut(s) 975, 1256
MwoI GCNNNNNNNGC 3 cut(s) 890, 1070, 1255
NciI CCSGG 1 cut(s) 925
NcoI CCATGG 1 cut(s) 873
NdeII GATC 7 cut(s) 38, 51, 176, 308, 351, 628, 970
NheI GCTAGC 1 cut(s) 527
NlaIII CATG 7 cut(s) 677, 827, 877, 1073, 1090, 1148, 1184
NlaIV GGNNCC 1 cut(s) 1010
NsiI ATGCAT 1 cut(s) 1075
NspI RCATGY 1 cut(s) 1073
NspV TTCGAA 1 cut(s) 155
PagI TCATGA 1 cut(s) 1144
PceI AGGCCT 1 cut(s) 943
PctI GAATGC 2 cut(s) 253, 1218
PfeI GAWTC 4 cut(s) 191, 416, 442, 1141
PflFI GACNNNGTC 1 cut(s) 755
PflMI CCANNNNNTGG 1 cut(s) 879
PkrI GCNGC 1 cut(s) 966
Ple19I CGATCG 1 cut(s) 54
PleI GAGTC 5 cut(s) 390, 788, 814, 981, 1091
PpsI GAGTC 5 cut(s) 390, 788, 814, 981, 1091
PpuMI RGGWCCY 1 cut(s) 1117
Psp5II RGGWCCY 1 cut(s) 1117
Psp6I CCWGG 1 cut(s) 168
PspEI GGTNACC 1 cut(s) 668
PspGI CCWGG 1 cut(s) 168
PspN4I GGNNCC 1 cut(s) 1010
PspPI GGNCC 3 cut(s) 362, 1009, 1117
PspPPI RGGWCCY 1 cut(s) 1117
PsuI RGATCY 2 cut(s) 38, 628
PsyI GACNNNGTC 1 cut(s) 755
PvuI CGATCG 1 cut(s) 54
RgaI GCGATCGC 1 cut(s) 54
RsaI GTAC 1 cut(s) 1058
RsaNI GTAC 1 cut(s) 1057
RseI CAYNNNNRTG 1 cut(s) 1091
SaqAI TTAA 5 cut(s) 257, 278, 534, 704, 1239
SatI GCNGC 1 cut(s) 965
Sau3AI GATC 7 cut(s) 38, 51, 176, 308, 351, 628, 970
Sau96I GGNCC 3 cut(s) 362, 1009, 1117
SchI GAGTC 5 cut(s) 391, 788, 815, 981, 1092
ScrFI CCNGG 2 cut(s) 170, 925
SduI GDGCHC 1 cut(s) 886
SexAI ACCWGGT 1 cut(s) 168
SfaAI GCGATCGC 1 cut(s) 54
SfaNI GCATC 1 cut(s) 1082
SfuI TTCGAA 1 cut(s) 155
SgfI GCGATCGC 1 cut(s) 54
SinI GGWCC 3 cut(s) 362, 1009, 1117
SmiMI CAYNNNNRTG 1 cut(s) 1091
SmlI CTYRAG 1 cut(s) 121
SmoI CTYRAG 1 cut(s) 121
Sse9I AATT 7 cut(s) 45, 474, 589, 692, 919, 948, 1186
SseBI AGGCCT 1 cut(s) 943
SsiI CCGC 3 cut(s) 5, 299, 1016
SspMI CTAG 3 cut(s) 335, 446, 528
StuI AGGCCT 1 cut(s) 943
StyD4I CCNGG 2 cut(s) 168, 923
StyI CCWWGG 1 cut(s) 873
TaaI ACNGT 7 cut(s) 294, 376, 652, 1035, 1112, 1132, 1244
TaiI ACGT 2 cut(s) 645, 1239
TaqI TCGA 3 cut(s) 43, 155, 960
TasI AATT 7 cut(s) 45, 474, 589, 692, 919, 948, 1186
TatI WGTACW 1 cut(s) 1056
TfiI GAWTC 4 cut(s) 191, 416, 442, 1141
Tru1I TTAA 5 cut(s) 257, 278, 534, 704, 1239
Tru9I TTAA 5 cut(s) 257, 278, 534, 704, 1239
TscAI CASTG 2 cut(s) 1066, 1176
TseI GCWGC 1 cut(s) 964
TspDTI ATGAA 5 cut(s) 429, 879, 1121, 1161, 1169
TspGWI ACGGA 2 cut(s) 23, 686
TspRI CASTG 2 cut(s) 1066, 1176
Tth111I GACNNNGTC 1 cut(s) 755
Van91I CCANNNNNTGG 1 cut(s) 879
VpaK11BI GGWCC 3 cut(s) 362, 1009, 1117
XapI RAATTY 2 cut(s) 589, 692
XbaI TCTAGA 1 cut(s) 445
XceI RCATGY 1 cut(s) 1073
XcmI CCANNNNNNNNNTGG 4 cut(s) 32, 680, 876, 1084
XspI CTAG 3 cut(s) 335, 446, 528
Zsp2I ATGCAT 1 cut(s) 1075
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.