RLG00000011313

UDP-D-xylose L-fucose alpha-1,3-D-xylosyltransferase 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0002462
Physical Location & Seq
Forward (+)
8487224 .. 8489071
1848 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011313

Sequence Viewer

Length: 1299 bp
ATGGCGCTTCGCCGAGACAAGGCGGCGGCTCAGTCTTCACTTCGCGGATCTCGAATTCTTGTAGCCATTGTCGTGGGAGTCCTTCTCGGCTGTGTCTTCGCCTTCTTGTATCCTCACGGCTTCTTCTCCAACTCTGATGATCCGCTCAGCCAAAACCGCCGAATCGGGAAATCGGACCTCCAGAGTAGCTCTTCTCAATGTGAACCACCGGAGCGGATTAACATGCTGAGGTCTGATATTGGAGCACTGTCGGACAAGAATGCTGAGTTGAAGAAGCAGGTACAAGATCTAACTGAAAGGCTACGGCTGGCTGAGCAGGGGAAAGATCATGCACATGAGCAGTTTTCAGTGTTAAGCAAGCCACACAAGGCTGGACCTTTTGGTACCGTCAAGGGCTTGAGGACTAACCCGACTGTTACTCCTGATGAATCTGTGAATCCGAGGTTGGCAAAGATCTTGGAGGAAGTAGCGGTTCATAAAGAACTCATAGTTGTACTGGCAAATTCTAATGTGAAATCCATGTTGGAGGTGCAGTTTACTAGCATCAAGAAGGCTGGCATAACCAATTATCTTGTTGTTGCATTAGACGATCAGATTGAAGAATTTTGTAAAGCCAATGATGTTCCTGTATACAGGAGAGCTCCAGATGAAGGTATTGATTCAGTTGCAAAGACTGGAGGTAACCATGCCGTCTCTGGGTTGAAGTTCCGTATCTTGAGGGAGTTTTTGCAACTAGGGTATGGCGTACTTCTCTCAGACGTTGATATAGTGTACTTGCAGAACCCATTCAATCATCTCTATCGGGATTCTGATGTAGAGTCAATGACTGATGGTCACAATAACATGACAGCTTATGGATACAATGATGTTTTTGATGAACCTTCTATGGGTTGGGCTCGTTATGCTCATACAATGAGGATATGGGTTTATAACTCTGGCTTCTTTTACTTAAGACCTACACTTCCTGCAATTGAGCTTTTGGATCGTGTGGCTGGACGGCTTTCTAGGGAAAAAGCATGGGACCAAGCTGTTTTTAATGAAGAGCTGTATTTCCCTTCACATCCGGGGTATGATGGGCTTCATGCTGCCAAGAGAACGATGGATTTCTATATGTTTATGAACAGCAAGGTTCTCTTCAAGACGGTCAGGAAAGATGCTAATTTGAAAAAGTTGAAACCAGTAATCCTTCATGTAAATTACCACCCAGACAAACTTCCAAGAATGAAGGCAATTGTAGAGTTCTATATTAATGGCAAGCAAGATGCGCTGGAACCTTTCCCTGATGGTTCTGATTGGTAG

Protein Analysis

433

Amino Acids

48.78

Weight (kDa)

7.74

Isoelectric Point (pI)

39.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleotid_trans PF03407 187 - 405 3.2e-46 Nucleotide-diphospho-sugar transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 930
Acc36I ACCTGC 1 cut(s) 268
Acc65I GGTACC 1 cut(s) 383
AccB1I GGYRCC 1 cut(s) 383
AccBSI CCGCTC 2 cut(s) 145, 214
AccI GTMKAC 1 cut(s) 630
AccII CGCG 1 cut(s) 45
AciI CCGC 7 cut(s) 23, 26, 45, 143, 157, 214, 470
AclWI GGATC 3 cut(s) 55, 134, 990
AcsI RAATTY 3 cut(s) 54, 502, 602
AfaI GTAC 5 cut(s) 282, 385, 495, 747, 773
AfiI CCNNNNNNNGG 4 cut(s) 19, 650, 696, 887
AflII CTTAAG 1 cut(s) 949
AgsI TTSAA 7 cut(s) 271, 599, 703, 790, 1138, 1165, 1174
AhdI GACNNNNNGTC 1 cut(s) 831
AjuI GAANNNNNNNTTGG 4 cut(s) 428, 460, 506, 538
AluBI AGCT 6 cut(s) 189, 641, 851, 976, 1028, 1045
AluI AGCT 6 cut(s) 189, 641, 851, 976, 1028, 1045
Alw21I GWGCWC 2 cut(s) 247, 643
Alw26I GTCTC 2 cut(s) 9, 697
AlwI GGATC 3 cut(s) 55, 134, 990
ApeKI GCWGC 1 cut(s) 1085
ApoI RAATTY 3 cut(s) 54, 502, 602
AseI ATTAAT 1 cut(s) 1248
Asp700I GAANNNNTTC 1 cut(s) 785
Asp718I GGTACC 1 cut(s) 383
AspLEI GCGC 2 cut(s) 7, 1267
AspS9I GGNCC 3 cut(s) 175, 374, 1021
AsuC2I CCSGG 1 cut(s) 1065
AvaII GGWCC 3 cut(s) 175, 374, 1021
BanI GGYRCC 1 cut(s) 383
BanII GRGCYC 2 cut(s) 643, 898
BbsI GAAGAC 2 cut(s) 27, 88
Bbv12I GWGCWC 2 cut(s) 247, 643
BbvCI CCTCAGC 1 cut(s) 227
BbvI GCAGC 1 cut(s) 1072
BccI CCATC 4 cut(s) 824, 1067, 1093, 1277
BceAI ACGGC 4 cut(s) 133, 320, 674, 1013
BciVI GTATCC 2 cut(s) 120, 851
BcnI CCSGG 1 cut(s) 1065
BcoDI GTCTC 2 cut(s) 9, 697
BfaI CTAG 3 cut(s) 540, 734, 1005
BfoI RGCGCY 1 cut(s) 8
BfrI CTTAAG 1 cut(s) 949
BfuAI ACCTGC 1 cut(s) 268
BfuI GTATCC 2 cut(s) 120, 851
BglII AGATCT 2 cut(s) 286, 453
BisI GCNGC 3 cut(s) 24, 27, 1086
BlpI GCTNAGC 2 cut(s) 146, 312
BlsI GCNGC 3 cut(s) 25, 28, 1087
Bme1390I CCNGG 1 cut(s) 1065
Bme18I GGWCC 3 cut(s) 175, 374, 1021
BmeRI GACNNNNNGTC 1 cut(s) 831
BmgT120I GGNCC 3 cut(s) 175, 374, 1021
BmiI GGNNCC 3 cut(s) 385, 1022, 1272
BmrFI CCNGG 1 cut(s) 1065
BmsI GCATC 3 cut(s) 552, 1144, 1252
BpiI GAAGAC 2 cut(s) 27, 88
BplI GAGNNNNNCTC 2 cut(s) 69, 101
BpmI CTGGAG 3 cut(s) 164, 627, 696
Bpu10I CCTNAGC 1 cut(s) 227
Bpu1102I GCTNAGC 2 cut(s) 146, 312
BpuEI CTTGAG 2 cut(s) 418, 736
BpuMI CCSGG 1 cut(s) 1065
BsaJI CCNNGG 2 cut(s) 440, 1064
BsaWI WCCGGW 1 cut(s) 208
BsaXI ACNNNNNCTCC 4 cut(s) 403, 433, 518, 548
Bsc4I CCNNNNNNNGG 4 cut(s) 19, 650, 696, 887
Bse1I ACTGG 3 cut(s) 501, 679, 1178
BseDI CCNNGG 2 cut(s) 440, 1064
BseGI GGATG 1 cut(s) 1060
BseLI CCNNNNNNNGG 4 cut(s) 19, 650, 696, 887
BseMII CTCAG 6 cut(s) 44, 160, 218, 255, 303, 768
BseNI ACTGG 3 cut(s) 501, 679, 1178
BseXI GCAGC 1 cut(s) 1072
BsgI GTGCAG 1 cut(s) 551
Bsh1236I CGCG 1 cut(s) 45
BshNI GGYRCC 1 cut(s) 383
BsiHKAI GWGCWC 2 cut(s) 247, 643
BsiSI CCGG 2 cut(s) 209, 1064
BslFI GGGAC 1 cut(s) 1034
BslI CCNNNNNNNGG 4 cut(s) 19, 650, 696, 887
BsmAI GTCTC 2 cut(s) 9, 697
BsmBI CGTCTC 1 cut(s) 697
BsmFI GGGAC 1 cut(s) 1034
BsmI GAATGC 1 cut(s) 265
Bsp1286I GDGCHC 3 cut(s) 247, 643, 898
Bsp143I GATC 7 cut(s) 47, 139, 286, 325, 453, 589, 982
Bsp1720I GCTNAGC 2 cut(s) 146, 312
BspACI CCGC 7 cut(s) 23, 26, 45, 143, 157, 214, 470
BspCNI CTCAG 6 cut(s) 43, 159, 219, 256, 304, 767
BspFNI CGCG 1 cut(s) 45
BspLI GGNNCC 3 cut(s) 385, 1022, 1272
BspMI ACCTGC 1 cut(s) 268
BspPI GGATC 3 cut(s) 55, 134, 990
BspQI GCTCTTC 2 cut(s) 196, 1035
BspT107I GGYRCC 1 cut(s) 383
BspTI CTTAAG 1 cut(s) 949
BsrBI CCGCTC 2 cut(s) 145, 214
BsrI ACTGG 3 cut(s) 501, 679, 1178
BssECI CCNNGG 2 cut(s) 440, 1064
BssMI GATC 7 cut(s) 47, 139, 286, 325, 453, 589, 982
BssNAI GTATAC 1 cut(s) 631
Bst1107I GTATAC 1 cut(s) 631
Bst4CI ACNGT 4 cut(s) 249, 388, 415, 1144
Bst6I CTCTTC 3 cut(s) 196, 1035, 1139
BstAFI CTTAAG 1 cut(s) 949
BstC8I GCNNGC 4 cut(s) 309, 359, 556, 1256
BstDEI CTNAG 6 cut(s) 30, 146, 227, 264, 312, 754
BstEII GGTNACC 1 cut(s) 680
BstF5I GGATG 1 cut(s) 1060
BstFNI CGCG 1 cut(s) 45
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 1267
BstKTI GATC 7 cut(s) 50, 142, 289, 328, 456, 592, 985
BstMAI GTCTC 2 cut(s) 9, 697
BstMBI GATC 7 cut(s) 47, 139, 286, 325, 453, 589, 982
BstMWI GCNNNNNNNGC 4 cut(s) 156, 313, 902, 1264
BstNSI RCATGY 1 cut(s) 226
BstPI GGTNACC 1 cut(s) 680
BstSCI CCNGG 1 cut(s) 1063
BstUI CGCG 1 cut(s) 45
BstV1I GCAGC 1 cut(s) 1072
BstV2I GAAGAC 2 cut(s) 27, 88
BstX2I RGATCY 3 cut(s) 47, 286, 453
BstXI CCANNNNNNTGG 1 cut(s) 73
BstYI RGATCY 3 cut(s) 47, 286, 453
BstZ17I GTATAC 1 cut(s) 631
BsuI GTATCC 2 cut(s) 120, 851
BtsCI GGATG 1 cut(s) 1060
BtsIMutI CAGTG 2 cut(s) 245, 354
BveI ACCTGC 1 cut(s) 268
Cac8I GCNNGC 4 cut(s) 309, 359, 556, 1256
CfoI GCGC 2 cut(s) 7, 1267
Cfr13I GGNCC 3 cut(s) 175, 374, 1021
Csp6I GTAC 5 cut(s) 281, 384, 494, 746, 772
CviAII CATG 9 cut(s) 223, 329, 335, 520, 686, 844, 1017, 1082, 1190
CviQI GTAC 5 cut(s) 281, 384, 494, 746, 772
DdeI CTNAG 6 cut(s) 30, 146, 227, 264, 312, 754
DpnI GATC 7 cut(s) 49, 141, 288, 327, 455, 591, 984
DpnII GATC 7 cut(s) 47, 139, 286, 325, 453, 589, 982
DriI GACNNNNNGTC 1 cut(s) 831
Eam1104I CTCTTC 3 cut(s) 196, 1035, 1139
Eam1105I GACNNNNNGTC 1 cut(s) 831
EarI CTCTTC 3 cut(s) 196, 1035, 1139
Ecl136II GAGCTC 1 cut(s) 641
Eco24I GRGCYC 2 cut(s) 643, 898
Eco47I GGWCC 3 cut(s) 175, 374, 1021
Eco53kI GAGCTC 1 cut(s) 641
Eco91I GGTNACC 1 cut(s) 680
EcoICRI GAGCTC 1 cut(s) 641
EcoO65I GGTNACC 1 cut(s) 680
EcoRI GAATTC 1 cut(s) 54
EcoT38I GRGCYC 2 cut(s) 643, 898
Esp3I CGTCTC 1 cut(s) 697
FaeI CATG 9 cut(s) 226, 332, 338, 523, 689, 847, 1020, 1085, 1193
FalI AAGNNNNNCTT 2 cut(s) 1118, 1150
FaqI GGGAC 1 cut(s) 1034
FatI CATG 9 cut(s) 222, 328, 334, 519, 685, 843, 1016, 1081, 1189
FblI GTMKAC 1 cut(s) 630
Fnu4HI GCNGC 3 cut(s) 24, 27, 1086
FokI GGATG 1 cut(s) 1047
FriOI GRGCYC 2 cut(s) 643, 898
Fsp4HI GCNGC 3 cut(s) 24, 27, 1086
FspBI CTAG 3 cut(s) 540, 734, 1005
GlaI GCGC 2 cut(s) 6, 1266
GluI GCNGC 3 cut(s) 24, 27, 1086
GsuI CTGGAG 3 cut(s) 164, 627, 696
HaeII RGCGCY 1 cut(s) 8
HapII CCGG 2 cut(s) 209, 1064
HhaI GCGC 2 cut(s) 7, 1267
Hin1II CATG 9 cut(s) 226, 332, 338, 523, 689, 847, 1020, 1085, 1193
Hin6I GCGC 2 cut(s) 5, 1265
HinP1I GCGC 2 cut(s) 5, 1265
HinfI GANTC 7 cut(s) 78, 162, 428, 436, 659, 806, 818
HpaII CCGG 2 cut(s) 209, 1064
Hpy166II GTNNAC 4 cut(s) 203, 537, 631, 772
Hpy188I TCNGA 9 cut(s) 136, 175, 235, 253, 441, 594, 757, 811, 1291
Hpy8I GTNNAC 4 cut(s) 203, 537, 631, 772
HpyAV CCTTC 8 cut(s) 92, 112, 544, 644, 891, 1065, 1196, 1219
HpyCH4III ACNGT 4 cut(s) 249, 388, 415, 1144
HpyCH4IV ACGT 1 cut(s) 759
HpyCH4V TGCA 7 cut(s) 332, 532, 581, 668, 730, 778, 968
HpyF10VI GCNNNNNNNGC 4 cut(s) 156, 313, 902, 1264
HpyF3I CTNAG 6 cut(s) 30, 146, 227, 264, 312, 754
HpySE526I ACGT 1 cut(s) 759
Hsp92II CATG 9 cut(s) 226, 332, 338, 523, 689, 847, 1020, 1085, 1193
HspAI GCGC 2 cut(s) 5, 1265
KpnI GGTACC 1 cut(s) 387
Kzo9I GATC 7 cut(s) 47, 139, 286, 325, 453, 589, 982
LguI GCTCTTC 2 cut(s) 196, 1035
LmnI GCTCC 3 cut(s) 211, 242, 646
Lsp1109I GCAGC 1 cut(s) 1072
LweI GCATC 3 cut(s) 552, 1144, 1252
MaeI CTAG 3 cut(s) 540, 734, 1005
MaeII ACGT 1 cut(s) 759
MaeIII GTNAC 3 cut(s) 415, 680, 833
MalI GATC 7 cut(s) 49, 141, 288, 327, 455, 591, 984
MbiI CCGCTC 2 cut(s) 145, 214
MboI GATC 7 cut(s) 47, 139, 286, 325, 453, 589, 982
MboII GAAGA 8 cut(s) 27, 88, 115, 183, 283, 611, 1052, 1126
MfeI CAATTG 2 cut(s) 969, 1230
MflI RGATCY 3 cut(s) 47, 286, 453
MhlI GDGCHC 3 cut(s) 247, 643, 898
MluCI AATT 8 cut(s) 54, 502, 565, 602, 969, 1159, 1195, 1230
MlyI GAGTC 2 cut(s) 87, 827
MmeI TCCRAC 3 cut(s) 153, 231, 504
MroXI GAANNNNTTC 1 cut(s) 785
MseI TTAA 5 cut(s) 219, 353, 950, 1035, 1248
MslI CAYNNNNRTG 2 cut(s) 71, 333
MspCI CTTAAG 1 cut(s) 949
MspI CCGG 2 cut(s) 209, 1064
MspR9I CCNGG 1 cut(s) 1065
MunI CAATTG 2 cut(s) 969, 1230
Mva1269I GAATGC 1 cut(s) 265
MvnI CGCG 1 cut(s) 45
MwoI GCNNNNNNNGC 4 cut(s) 156, 313, 902, 1264
NciI CCSGG 1 cut(s) 1065
NdeII GATC 7 cut(s) 47, 139, 286, 325, 453, 589, 982
NlaIII CATG 9 cut(s) 226, 332, 338, 523, 689, 847, 1020, 1085, 1193
NlaIV GGNNCC 3 cut(s) 385, 1022, 1272
NmeAIII GCCGAG 2 cut(s) 38, 66
NmuCI GTSAC 1 cut(s) 833
NspI RCATGY 1 cut(s) 226
PciSI GCTCTTC 2 cut(s) 196, 1035
PcsI WCGNNNNNNNCGW 1 cut(s) 49
PctI GAATGC 1 cut(s) 265
PdmI GAANNNNTTC 1 cut(s) 785
PfeI GAWTC 5 cut(s) 162, 428, 436, 659, 806
PkrI GCNGC 3 cut(s) 25, 28, 1087
PleI GAGTC 2 cut(s) 86, 826
PpsI GAGTC 2 cut(s) 86, 826
PshBI ATTAAT 1 cut(s) 1248
PsiI TTATAA 1 cut(s) 930
Psp124BI GAGCTC 1 cut(s) 643
PspEI GGTNACC 1 cut(s) 680
PspN4I GGNNCC 3 cut(s) 385, 1022, 1272
PspPI GGNCC 3 cut(s) 175, 374, 1021
PsuI RGATCY 3 cut(s) 47, 286, 453
RsaI GTAC 5 cut(s) 282, 385, 495, 747, 773
RsaNI GTAC 5 cut(s) 281, 384, 494, 746, 772
RseI CAYNNNNRTG 2 cut(s) 71, 333
SacI GAGCTC 1 cut(s) 643
SapI GCTCTTC 2 cut(s) 196, 1035
SaqAI TTAA 5 cut(s) 219, 353, 950, 1035, 1248
SatI GCNGC 3 cut(s) 24, 27, 1086
Sau3AI GATC 7 cut(s) 47, 139, 286, 325, 453, 589, 982
Sau96I GGNCC 3 cut(s) 175, 374, 1021
SchI GAGTC 2 cut(s) 87, 827
ScrFI CCNGG 1 cut(s) 1065
SduI GDGCHC 3 cut(s) 247, 643, 898
SfaNI GCATC 3 cut(s) 552, 1144, 1252
SinI GGWCC 3 cut(s) 175, 374, 1021
SmiMI CAYNNNNRTG 2 cut(s) 71, 333
SmlI CTYRAG 3 cut(s) 397, 715, 949
SmoI CTYRAG 3 cut(s) 397, 715, 949
Sse9I AATT 8 cut(s) 54, 502, 565, 602, 969, 1159, 1195, 1230
SsiI CCGC 7 cut(s) 23, 26, 45, 143, 157, 214, 470
SspMI CTAG 3 cut(s) 540, 734, 1005
SstI GAGCTC 1 cut(s) 643
StyD4I CCNGG 1 cut(s) 1063
TaaI ACNGT 4 cut(s) 249, 388, 415, 1144
TaiI ACGT 1 cut(s) 762
TaqI TCGA 1 cut(s) 52
TasI AATT 8 cut(s) 54, 502, 565, 602, 969, 1159, 1195, 1230
TatI WGTACW 2 cut(s) 493, 771
TauI GCSGC 2 cut(s) 26, 29
TfiI GAWTC 5 cut(s) 162, 428, 436, 659, 806
Tru1I TTAA 5 cut(s) 219, 353, 950, 1035, 1248
Tru9I TTAA 5 cut(s) 219, 353, 950, 1035, 1248
TscAI CASTG 2 cut(s) 252, 354
TseFI GTSAC 1 cut(s) 833
TseI GCWGC 1 cut(s) 1085
Tsp45I GTSAC 1 cut(s) 833
TspDTI ATGAA 9 cut(s) 441, 464, 663, 891, 1053, 1070, 1133, 1178, 1238
TspGWI ACGGA 1 cut(s) 698
TspRI CASTG 2 cut(s) 252, 354
Vha464I CTTAAG 1 cut(s) 949
VpaK11BI GGWCC 3 cut(s) 175, 374, 1021
VspI ATTAAT 1 cut(s) 1248
XapI RAATTY 3 cut(s) 54, 502, 602
XceI RCATGY 1 cut(s) 226
XcmI CCANNNNNNNNNTGG 2 cut(s) 692, 1096
XmiI GTMKAC 1 cut(s) 630
XmnI GAANNNNTTC 1 cut(s) 785
XspI CTAG 3 cut(s) 540, 734, 1005
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.