Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0002462

Physical Location & Seq

Genomic Coordinates Reverse (-)

1789700 .. 1791891

Gene Structure 2192 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1029300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGATGGCGGGTCGTAGAGAGGGGTCGTTGATGAGGGACAAGACGCAGTCGTTTCGTGGATCTCGAATCGTGACCGCCATTGTCATGGGAATCCTACTGGGTTGCGTCTTCGCCTTCTTGTTTCCTCACGGATTCCTGAGCTCCTATCCGCCTATCCAAAACCGCCGATTTGGGAAATCGGATCTTCAGATTAGCTCATCACAATGTGAATCAACAGAACGGACTACTGCGTTAAGGTCAGATATTGCATCATTGTCGGACAAGAATGATGAGCTGAAGAAGGAGGTGCAGGAACTAACTGAAAAGCTACGGCTGTCTGAACAAGGAAAGGATCATGCACACGAACAGTTTTCTGTGTTAGGTAAACCGCATAAGGCTGGCCCTTTTGGTACCGTCAAGGGCTTGAGAACTAACCCGGCAGTTGTTCCTGATGAATCTGTGAATCCGAGGTTGGCAAAGATCTTGGAGGAAGTTGCAGTACAAAAAGAGCTTATAGTTGCACTTGCGAATTCAAATGTGAAAAGCATGTTGGAGGTATGGTTTACTAGCATCAAGAAAGTTGGTATAACCAATTATCTAGTTGTAGGGTTAGATGATGAAATTGAAGAATTTTGCAAAGCTAATGGTGTTCCTGTATACAAAAGAGATCCAGATGAGGGTTTTGATTCAATTGGGAAGACGGGAGGTAACCATGCGGTGTCTGGGTTGAAATTTCGTATCTTGAGGGAGTTTCTGCAACTAGGTTACAGTGTTCTTCTCTCGGATGTTGATATAGTATTTTTGCAGAACCCGTTCAATCATCTCTACCGGGATTCTGATGTAGAGTCCATGACTGATGGTCACAATAACTATACAGCTTATGGATTTAATGATGTGTTTGACGAACCCTCTATGGGGTGGGCTCGATATGCTCACACAATGAGGATATGGGTTTATAACTCTGGTTTCTTTTACATAAGGCCTACGCTTCCTGCAATTGAGCTTTTGGATCGTGTGGCTGAACGACTCTCTAGGCCAGAAAAAGCATGGGACCAAGCAGTGTTCAACGAGGAACTATTTTTCCCTTCACATCCGGGGTACAATGGGCTTCATGCTTCCAAGAGAACAATGGATTTCTATCTCTTCATGAATAGCAAGGTCCTCTTCAAGACGGTCAGGAAAGACGCTAATTTGAAAAGGTTGAAACCAGTAATCCTTCATGTAAATTACCACCCGGATAAACTTCCAAGGATGCAGGCAATTATGGATTTCTATGTTAACGGCAAGCAAGATGCGCTGGAACCTTTCCCTGATGGTTCTCAATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016740 GO:0016757 GO:0021700 GO:0022622 GO:0030154 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0071554 GO:0071695 GO:0071840 GO:0080147 GO:0090558 GO:0090627 GO:0097708 GO:0098791 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00514 map00514

Pfam Domains

Protein Families

Nucleotid_trans

Protein Analysis

436

Amino Acids

49.42

Weight (kDa)

7.21

Isoelectric Point (pI)

36.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nucleotid_trans	PF03407	189 - 408	2.7e-49	Nucleotide-diphospho-sugar transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19360 AT1G19360 AT1G75110
fragaria_vesca	FvH4_2g08270 FvH4_2g08270 FvH4_2g08270 FvH4_2g08270 FvH4_2g40081
malus_domestica	MD08G1032600.v1.1 MD10G1080700.v1.1 MD15G1029300.v1.1
prunus_persica	Prupe.1G382100_v2.0.a1 Prupe.8G102000_v2.0.a1
pyrus_communis	pycom05g06040 pycom08g02590 pycom10g06390 pycom15g02600
rosa_chinensis	RchiOBHm_Chr6g0263151 RchiOBHm_Chr6g0300661
rosa_laevigata	RLG00000011313 RLG00000014368
rosa_multiflora	Rmu_co8387041.1_g000001 Rmu_sc0004226.1_g000014 Rmu_sc0014374.1_g000002 Rmu_sc0015149.1_g000002
rosa_roxburghii	Rroxscaffold_176G00430950 Rroxscaffold_7G00167540 Rroxscaffold_7G00204620
rosa_rugosa	Rorug06G0003900 Rorug06G0298200
rosa_samantha	Rh6AG123000 Rh6AG410900 Rh6BG118000 Rh6BG418100 Rh6CG116200 Rh6CG425600 Rh6DG104700 Rh6DG411000
rosa_wichuraiana	Rw0G002190 Rw6G010570 Rw6G035950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	936
Acc65I	GGTACC	1 cut(s)	389
AccB1I	GGYRCC	1 cut(s)	389
AccI	GTMKAC	1 cut(s)	636
AciI	CCGC	6 cut(s)	8, 75, 149, 163, 368, 695
AclWI	GGATC	5 cut(s)	67, 189, 339, 641, 996
AcsI	RAATTY	3 cut(s)	508, 608, 710
AcuI	CTGAAG	2 cut(s)	170, 296
AdeI	CACNNNGTG	1 cut(s)	206
AfaI	GTAC	3 cut(s)	391, 480, 1079
AfiI	CCNNNNNNNGG	3 cut(s)	656, 893, 894
AgsI	TTSAA	9 cut(s)	513, 605, 669, 709, 796, 1045, 1147, 1174, 1183
AhdI	GACNNNNNGTC	1 cut(s)	837
AjuI	GAANNNNNNNTTGG	4 cut(s)	434, 466, 512, 544
AloI	GAACNNNNNNTCC	2 cut(s)	1044, 1076
AluBI	AGCT	8 cut(s)	141, 195, 274, 307, 490, 620, 857, 982
AluI	AGCT	8 cut(s)	141, 195, 274, 307, 490, 620, 857, 982
Alw21I	GWGCWC	1 cut(s)	143
AlwI	GGATC	5 cut(s)	67, 189, 339, 641, 996
AoxI	GGCC	3 cut(s)	379, 959, 1013
ApoI	RAATTY	3 cut(s)	508, 608, 710
Asp700I	GAANNNNTTC	1 cut(s)	791
Asp718I	GGTACC	1 cut(s)	389
AspLEI	GCGC	1 cut(s)	1276
AspS9I	GGNCC	3 cut(s)	380, 1030, 1138
AsuC2I	CCSGG	4 cut(s)	416, 809, 1074, 1214
AvaII	GGWCC	2 cut(s)	1030, 1138
BanI	GGYRCC	1 cut(s)	389
BanII	GRGCYC	2 cut(s)	143, 904
BarI	GAAGNNNNNNTAC	2 cut(s)	462, 494
BbsI	GAAGAC	2 cut(s)	100, 683
Bbv12I	GWGCWC	1 cut(s)	143
BccI	CCATC	2 cut(s)	830, 1286
BceAI	ACGGC	2 cut(s)	326, 1276
BcgI	CGANNNNNNTGC	4 cut(s)	35, 69, 237, 271
BcnI	CCSGG	4 cut(s)	416, 809, 1074, 1214
BfaI	CTAG	4 cut(s)	546, 578, 740, 1011
BglII	AGATCT	1 cut(s)	459
Bme1390I	CCNGG	4 cut(s)	416, 809, 1074, 1214
Bme18I	GGWCC	2 cut(s)	1030, 1138
BmeRI	GACNNNNNGTC	1 cut(s)	837
BmgT120I	GGNCC	3 cut(s)	380, 1030, 1138
BmiI	GGNNCC	3 cut(s)	391, 1031, 1281
BmrFI	CCNGG	4 cut(s)	416, 809, 1074, 1214
BmrI	ACTGGG	1 cut(s)	107
BmsI	GCATC	4 cut(s)	257, 558, 1221, 1261
BmuI	ACTGGG	1 cut(s)	107
BpiI	GAAGAC	2 cut(s)	100, 683
Bpu10I	CCTNAGC	1 cut(s)	137
BpuEI	CTTGAG	2 cut(s)	424, 742
BpuMI	CCSGG	4 cut(s)	416, 809, 1074, 1214
BsaBI	GATNNNNATC	1 cut(s)	1116
BsaJI	CCNNGG	3 cut(s)	446, 1073, 1226
BsaXI	ACNNNNNCTCC	2 cut(s)	524, 554
Bsc4I	CCNNNNNNNGG	3 cut(s)	656, 893, 894
Bse1I	ACTGG	2 cut(s)	102, 1187
Bse8I	GATNNNNATC	1 cut(s)	1116
BseDI	CCNNGG	3 cut(s)	446, 1073, 1226
BseGI	GGATG	3 cut(s)	769, 1069, 1236
BseJI	GATNNNNATC	1 cut(s)	1116
BseLI	CCNNNNNNNGG	3 cut(s)	656, 893, 894
BseMII	CTCAG	1 cut(s)	128
BseNI	ACTGG	2 cut(s)	102, 1187
BsgI	GTGCAG	1 cut(s)	308
BshFI	GGCC	3 cut(s)	381, 961, 1015
BshNI	GGYRCC	1 cut(s)	389
BsiHKAI	GWGCWC	1 cut(s)	143
BsiSI	CCGG	4 cut(s)	416, 808, 1073, 1214
BslFI	GGGAC	2 cut(s)	50, 1043
BslI	CCNNNNNNNGG	3 cut(s)	656, 893, 894
BsmFI	GGGAC	2 cut(s)	50, 1043
BsnI	GGCC	3 cut(s)	381, 961, 1015
Bsp1286I	GDGCHC	2 cut(s)	143, 904
Bsp143I	GATC	6 cut(s)	59, 181, 331, 459, 646, 988
BspACI	CCGC	6 cut(s)	8, 75, 149, 163, 368, 695
BspANI	GGCC	3 cut(s)	381, 961, 1015
BspCNI	CTCAG	1 cut(s)	129
BspHI	TCATGA	1 cut(s)	1125
BspLI	GGNNCC	3 cut(s)	391, 1031, 1281
BspPI	GGATC	5 cut(s)	67, 189, 339, 641, 996
BspT107I	GGYRCC	1 cut(s)	389
BsrI	ACTGG	2 cut(s)	102, 1187
BssECI	CCNNGG	3 cut(s)	446, 1073, 1226
BssMI	GATC	6 cut(s)	59, 181, 331, 459, 646, 988
BssNAI	GTATAC	1 cut(s)	637
BssT1I	CCWWGG	1 cut(s)	1226
Bst1107I	GTATAC	1 cut(s)	637
Bst4CI	ACNGT	4 cut(s)	348, 394, 749, 1153
Bst6I	CTCTTC	2 cut(s)	1127, 1148
BstC8I	GCNNGC	3 cut(s)	379, 1236, 1265
BstDEI	CTNAG	1 cut(s)	137
BstEII	GGTNACC	1 cut(s)	686
BstF5I	GGATG	3 cut(s)	769, 1069, 1236
BstHHI	GCGC	1 cut(s)	1276
BstKTI	GATC	6 cut(s)	62, 184, 334, 462, 649, 991
BstMBI	GATC	6 cut(s)	59, 181, 331, 459, 646, 988
BstMWI	GCNNNNNNNGC	2 cut(s)	908, 1273
BstNSI	RCATGY	1 cut(s)	529
BstPI	GGTNACC	1 cut(s)	686
BstSCI	CCNGG	4 cut(s)	414, 807, 1072, 1212
BstV2I	GAAGAC	2 cut(s)	100, 683
BstX2I	RGATCY	4 cut(s)	59, 181, 459, 646
BstXI	CCANNNNNNTGG	1 cut(s)	85
BstYI	RGATCY	4 cut(s)	59, 181, 459, 646
BstZ17I	GTATAC	1 cut(s)	637
BsuRI	GGCC	3 cut(s)	381, 961, 1015
BtsCI	GGATG	3 cut(s)	769, 1069, 1236
BtsI	GCAGTG	1 cut(s)	1044
BtsIMutI	CAGTG	2 cut(s)	754, 1044
Cac8I	GCNNGC	3 cut(s)	379, 1236, 1265
CciI	TCATGA	1 cut(s)	1125
CfoI	GCGC	1 cut(s)	1276
Cfr13I	GGNCC	3 cut(s)	380, 1030, 1138
CseI	GACGC	3 cut(s)	52, 94, 1172
Csp6I	GTAC	3 cut(s)	390, 479, 1078
CviAII	CATG	9 cut(s)	85, 335, 526, 692, 829, 1026, 1091, 1126, 1199
CviQI	GTAC	3 cut(s)	390, 479, 1078
DdeI	CTNAG	1 cut(s)	137
DpnI	GATC	6 cut(s)	61, 183, 333, 461, 648, 990
DpnII	GATC	6 cut(s)	59, 181, 331, 459, 646, 988
DraIII	CACNNNGTG	1 cut(s)	206
DriI	GACNNNNNGTC	1 cut(s)	837
Eam1104I	CTCTTC	2 cut(s)	1127, 1148
Eam1105I	GACNNNNNGTC	1 cut(s)	837
EarI	CTCTTC	2 cut(s)	1127, 1148
EciI	GGCGGA	1 cut(s)	138
Ecl136II	GAGCTC	1 cut(s)	141
Eco130I	CCWWGG	1 cut(s)	1226
Eco147I	AGGCCT	1 cut(s)	961
Eco24I	GRGCYC	2 cut(s)	143, 904
Eco47I	GGWCC	2 cut(s)	1030, 1138
Eco53kI	GAGCTC	1 cut(s)	141
Eco57I	CTGAAG	2 cut(s)	170, 296
Eco91I	GGTNACC	1 cut(s)	686
EcoICRI	GAGCTC	1 cut(s)	141
EcoO109I	RGGNCCY	1 cut(s)	1138
EcoO65I	GGTNACC	1 cut(s)	686
EcoRI	GAATTC	1 cut(s)	508
EcoT14I	CCWWGG	1 cut(s)	1226
EcoT38I	GRGCYC	2 cut(s)	143, 904
ErhI	CCWWGG	1 cut(s)	1226
FaeI	CATG	9 cut(s)	88, 338, 529, 695, 832, 1029, 1094, 1129, 1202
FalI	AAGNNNNNCTT	2 cut(s)	1127, 1159
FaqI	GGGAC	2 cut(s)	50, 1043
FatI	CATG	9 cut(s)	84, 334, 525, 691, 828, 1025, 1090, 1125, 1198
FblI	GTMKAC	1 cut(s)	636
FokI	GGATG	3 cut(s)	776, 1056, 1243
FriOI	GRGCYC	2 cut(s)	143, 904
FspBI	CTAG	4 cut(s)	546, 578, 740, 1011
GlaI	GCGC	1 cut(s)	1275
HaeIII	GGCC	3 cut(s)	381, 961, 1015
HapII	CCGG	4 cut(s)	416, 808, 1073, 1214
HgaI	GACGC	3 cut(s)	52, 94, 1172
HhaI	GCGC	1 cut(s)	1276
Hin1II	CATG	9 cut(s)	88, 338, 529, 695, 832, 1029, 1094, 1129, 1202
Hin6I	GCGC	1 cut(s)	1274
HinP1I	GCGC	1 cut(s)	1274
HincII	GTYRAC	1 cut(s)	1258
HindII	GTYRAC	1 cut(s)	1258
HpaI	GTTAAC	1 cut(s)	1258
HpaII	CCGG	4 cut(s)	416, 808, 1073, 1214
Hpy166II	GTNNAC	4 cut(s)	365, 543, 637, 1258
Hpy188I	TCNGA	8 cut(s)	181, 189, 241, 259, 319, 447, 763, 817
Hpy8I	GTNNAC	4 cut(s)	365, 543, 637, 1258
HpyAV	CCTTC	4 cut(s)	124, 274, 1074, 1205
HpyCH4III	ACNGT	4 cut(s)	348, 394, 749, 1153
HpyF10VI	GCNNNNNNNGC	2 cut(s)	908, 1273
HpyF3I	CTNAG	1 cut(s)	137
Hsp92II	CATG	9 cut(s)	88, 338, 529, 695, 832, 1029, 1094, 1129, 1202
HspAI	GCGC	1 cut(s)	1274
KpnI	GGTACC	1 cut(s)	393
KspAI	GTTAAC	1 cut(s)	1258
Kzo9I	GATC	6 cut(s)	59, 181, 331, 459, 646, 988
LmnI	GCTCC	1 cut(s)	146
LweI	GCATC	4 cut(s)	257, 558, 1221, 1261
MaeI	CTAG	4 cut(s)	546, 578, 740, 1011
MaeIII	GTNAC	4 cut(s)	70, 686, 743, 839
MalI	GATC	6 cut(s)	61, 183, 333, 461, 648, 990
MboI	GATC	6 cut(s)	59, 181, 331, 459, 646, 988
MboII	GAAGA	8 cut(s)	100, 176, 289, 617, 688, 746, 1114, 1135
MfeI	CAATTG	2 cut(s)	669, 975
MflI	RGATCY	4 cut(s)	59, 181, 459, 646
MhlI	GDGCHC	2 cut(s)	143, 904
MlyI	GAGTC	2 cut(s)	833, 999
MmeI	TCCRAC	2 cut(s)	237, 510
MroXI	GAANNNNTTC	1 cut(s)	791
MseI	TTAA	3 cut(s)	233, 867, 1257
MslI	CAYNNNNRTG	2 cut(s)	83, 202
MspI	CCGG	4 cut(s)	416, 808, 1073, 1214
MspR9I	CCNGG	4 cut(s)	416, 809, 1074, 1214
MunI	CAATTG	2 cut(s)	669, 975
MwoI	GCNNNNNNNGC	2 cut(s)	908, 1273
NciI	CCSGG	4 cut(s)	416, 809, 1074, 1214
NdeII	GATC	6 cut(s)	59, 181, 331, 459, 646, 988
NlaIII	CATG	9 cut(s)	88, 338, 529, 695, 832, 1029, 1094, 1129, 1202
NlaIV	GGNNCC	3 cut(s)	391, 1031, 1281
NmuCI	GTSAC	2 cut(s)	70, 839
NspI	RCATGY	1 cut(s)	529
PagI	TCATGA	1 cut(s)	1125
PceI	AGGCCT	1 cut(s)	961
PcsI	WCGNNNNNNNCGW	1 cut(s)	61
PdmI	GAANNNNTTC	1 cut(s)	791
PfeI	GAWTC	8 cut(s)	66, 90, 132, 209, 434, 442, 665, 812
PflFI	GACNNNGTC	1 cut(s)	46
PleI	GAGTC	2 cut(s)	832, 999
PpsI	GAGTC	2 cut(s)	832, 999
PpuMI	RGGWCCY	1 cut(s)	1138
PsiI	TTATAA	1 cut(s)	936
Psp124BI	GAGCTC	1 cut(s)	143
Psp5II	RGGWCCY	1 cut(s)	1138
PspEI	GGTNACC	1 cut(s)	686
PspN4I	GGNNCC	3 cut(s)	391, 1031, 1281
PspPI	GGNCC	3 cut(s)	380, 1030, 1138
PspPPI	RGGWCCY	1 cut(s)	1138
PsuI	RGATCY	4 cut(s)	59, 181, 459, 646
PsyI	GACNNNGTC	1 cut(s)	46
RsaI	GTAC	3 cut(s)	391, 480, 1079
RsaNI	GTAC	3 cut(s)	390, 479, 1078
RseI	CAYNNNNRTG	2 cut(s)	83, 202
SacI	GAGCTC	1 cut(s)	143
SaqAI	TTAA	3 cut(s)	233, 867, 1257
Sau3AI	GATC	6 cut(s)	59, 181, 331, 459, 646, 988
Sau96I	GGNCC	3 cut(s)	380, 1030, 1138
SchI	GAGTC	2 cut(s)	833, 999
ScrFI	CCNGG	4 cut(s)	416, 809, 1074, 1214
SduI	GDGCHC	2 cut(s)	143, 904
SfaNI	GCATC	4 cut(s)	257, 558, 1221, 1261
SinI	GGWCC	2 cut(s)	1030, 1138
SmiMI	CAYNNNNRTG	2 cut(s)	83, 202
SmlI	CTYRAG	2 cut(s)	403, 721
SmoI	CTYRAG	2 cut(s)	403, 721
SseBI	AGGCCT	1 cut(s)	961
SsiI	CCGC	6 cut(s)	8, 75, 149, 163, 368, 695
SspMI	CTAG	4 cut(s)	546, 578, 740, 1011
SstI	GAGCTC	1 cut(s)	143
StuI	AGGCCT	1 cut(s)	961
StyD4I	CCNGG	4 cut(s)	414, 807, 1072, 1212
StyI	CCWWGG	1 cut(s)	1226
TaaI	ACNGT	4 cut(s)	348, 394, 749, 1153
TaqI	TCGA	2 cut(s)	64, 904
TatI	WGTACW	1 cut(s)	478
TfiI	GAWTC	8 cut(s)	66, 90, 132, 209, 434, 442, 665, 812
Tru1I	TTAA	3 cut(s)	233, 867, 1257
Tru9I	TTAA	3 cut(s)	233, 867, 1257
TscAI	CASTG	2 cut(s)	754, 1044
TseFI	GTSAC	2 cut(s)	70, 839
Tsp45I	GTSAC	2 cut(s)	70, 839
TspDTI	ATGAA	6 cut(s)	447, 612, 1079, 1114, 1142, 1187
TspGWI	ACGGA	2 cut(s)	144, 235
TspRI	CASTG	2 cut(s)	754, 1044
Tth111I	GACNNNGTC	1 cut(s)	46
VpaK11BI	GGWCC	2 cut(s)	1030, 1138
XapI	RAATTY	3 cut(s)	508, 608, 710
XceI	RCATGY	1 cut(s)	529
XcmI	CCANNNNNNNNNTGG	3 cut(s)	698, 1023, 1105
XmiI	GTMKAC	1 cut(s)	636
XmnI	GAANNNNTTC	1 cut(s)	791
XspI	CTAG	4 cut(s)	546, 578, 740, 1011

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.