Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014374.1

Orthogroup ID

OG0002462

Physical Location & Seq

Genomic Coordinates Reverse (-)

2935 .. 4107

Gene Structure 1173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014374.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

atgttacggttaagctgccagcatagcttgagtgtcgacctgtattttggcctgcagagtagctcttctcaatgtgaaccaccggaacggattaacatgctgaggtctgatattggagcactgtcggacaagaatgctgagttgaagaagcagatacaagacctaactgaaaagctacggctggctgagcaggggaaagatcatgcacatgagcagttttcggtgttaagcaagccacacaaggctggaccttttggtaccgtcaagggcttgaggactaacccgactgttactcctgatgaatctgtgaatccgaggttggcaaagatcttggaggaagtagcggttcataaagaactcatagttgtactggcaaattctaatgtgaaatccatgttggaggtgcagtttactagcatcaagaaggctggcataaccaattatcttgttgttgcactagacgatcagattgaagaattttgcaaagccaatgatgttcctgtatacaggagagctccagatgaaggtattgattcagttgcaaagactggaggtaaccatgctgtctctgggttgaagttccgtatcttgagggagtttttgcaactaggttatggggtacttctctcagacgttgatatagtgtacttgcagaacccattcaatcatctctatcgggattccgatgtagagtcaatgactgatggtcacaataacatgacagcttatggatacaatgatgtttttgatgaaccttctatgggttgggctcgttatgctcatacaatgaggatatgggtttataactctggcttcttttacttaagacctacacttcctgcaattgagcttttggatcgtgtggctggacggctttctagggaaaaagcatgggaccaagctgtttttaatgaagagctgtatttcccttcacatccggggtatgatgggcttcatgctgccaagagaacgatggatttctatatgtttatgaacagcaaggttctcttcaagacggttaggaaagatgctaatttgaaaaagttgaaaccagtaatccttcatgtaaattaccacccagacaaacttccaagaatgaaggcaattgtagagttctatattaatggcaagcaagatgcactggaacctttccctgatggttctgattggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016740 GO:0016757 GO:0021700 GO:0022622 GO:0030154 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0071554 GO:0071695 GO:0071840 GO:0080147 GO:0090558 GO:0090627 GO:0097708 GO:0098791 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00514 map00514

Pfam Domains

Protein Families

Nucleotid_trans

Protein Analysis

390

Amino Acids

44.32

Weight (kDa)

6.51

Isoelectric Point (pI)

37.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19360 AT1G19360 AT1G75110
fragaria_vesca	FvH4_2g08270 FvH4_2g08270 FvH4_2g08270 FvH4_2g08270 FvH4_2g40081
malus_domestica	MD08G1032600.v1.1 MD10G1080700.v1.1 MD15G1029300.v1.1
prunus_persica	Prupe.1G382100_v2.0.a1 Prupe.8G102000_v2.0.a1
pyrus_communis	pycom05g06040 pycom08g02590 pycom10g06390 pycom15g02600
rosa_chinensis	RchiOBHm_Chr6g0263151 RchiOBHm_Chr6g0300661
rosa_laevigata	RLG00000011313 RLG00000014368
rosa_multiflora	Rmu_co8387041.1_g000001 Rmu_sc0004226.1_g000014 Rmu_sc0014374.1_g000002 Rmu_sc0015149.1_g000002
rosa_roxburghii	Rroxscaffold_176G00430950 Rroxscaffold_7G00167540 Rroxscaffold_7G00204620
rosa_rugosa	Rorug06G0003900 Rorug06G0298200
rosa_samantha	Rh6AG123000 Rh6AG410900 Rh6BG118000 Rh6BG418100 Rh6CG116200 Rh6CG425600 Rh6DG104700 Rh6DG411000
rosa_wichuraiana	Rw0G002190 Rw6G010570 Rw6G035950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	804
Acc65I	GGTACC	1 cut(s)	257
AccB1I	GGYRCC	1 cut(s)	257
AccI	GTMKAC	2 cut(s)	36, 504
AciI	CCGC	1 cut(s)	344
AclWI	GGATC	1 cut(s)	864
AcsI	RAATTY	2 cut(s)	376, 476
AfaI	GTAC	4 cut(s)	259, 369, 621, 647
AfiI	CCNNNNNNNGG	2 cut(s)	524, 761
AflII	CTTAAG	1 cut(s)	823
AgsI	TTSAA	7 cut(s)	145, 473, 577, 664, 1012, 1039, 1048
AhdI	GACNNNNNGTC	1 cut(s)	705
AjuI	GAANNNNNNNTTGG	4 cut(s)	302, 334, 380, 412
AluBI	AGCT	9 cut(s)	15, 27, 63, 175, 515, 725, 850, 902, 919
AluI	AGCT	9 cut(s)	15, 27, 63, 175, 515, 725, 850, 902, 919
Alw21I	GWGCWC	2 cut(s)	121, 517
Alw26I	GTCTC	1 cut(s)	571
AlwI	GGATC	1 cut(s)	864
AoxI	GGCC	1 cut(s)	49
ApeKI	GCWGC	2 cut(s)	15, 959
ApoI	RAATTY	2 cut(s)	376, 476
ArsI	GACNNNNNNTTYG	2 cut(s)	29, 61
AseI	ATTAAT	1 cut(s)	1122
Asp700I	GAANNNNTTC	1 cut(s)	659
Asp718I	GGTACC	1 cut(s)	257
AspS9I	GGNCC	2 cut(s)	248, 895
AsuC2I	CCSGG	1 cut(s)	939
AvaII	GGWCC	2 cut(s)	248, 895
BanI	GGYRCC	1 cut(s)	257
BanII	GRGCYC	2 cut(s)	517, 772
Bbv12I	GWGCWC	2 cut(s)	121, 517
BbvCI	CCTCAGC	1 cut(s)	101
BbvI	GCAGC	2 cut(s)	2, 946
BccI	CCATC	4 cut(s)	698, 941, 967, 1151
BceAI	ACGGC	2 cut(s)	194, 887
BciVI	GTATCC	1 cut(s)	725
BcnI	CCSGG	1 cut(s)	939
BcoDI	GTCTC	1 cut(s)	571
BfaI	CTAG	4 cut(s)	414, 458, 608, 879
BfmI	CTRYAG	1 cut(s)	53
BfrI	CTTAAG	1 cut(s)	823
BfuI	GTATCC	1 cut(s)	725
BglII	AGATCT	1 cut(s)	327
BisI	GCNGC	2 cut(s)	16, 960
BlpI	GCTNAGC	1 cut(s)	186
BlsI	GCNGC	2 cut(s)	17, 961
Bme1390I	CCNGG	1 cut(s)	939
Bme18I	GGWCC	2 cut(s)	248, 895
BmeRI	GACNNNNNGTC	1 cut(s)	705
BmgT120I	GGNCC	2 cut(s)	248, 895
BmiI	GGNNCC	3 cut(s)	259, 896, 1146
BmrFI	CCNGG	1 cut(s)	939
BmsI	GCATC	3 cut(s)	426, 1018, 1126
BpmI	CTGGAG	2 cut(s)	501, 570
Bpu10I	CCTNAGC	1 cut(s)	101
Bpu1102I	GCTNAGC	1 cut(s)	186
BpuEI	CTTGAG	3 cut(s)	49, 292, 610
BpuMI	CCSGG	1 cut(s)	939
BsaJI	CCNNGG	2 cut(s)	314, 938
BsaWI	WCCGGW	1 cut(s)	82
BsaXI	ACNNNNNCTCC	4 cut(s)	277, 307, 392, 422
Bsc4I	CCNNNNNNNGG	2 cut(s)	524, 761
Bse1I	ACTGG	4 cut(s)	375, 553, 1052, 1146
BseDI	CCNNGG	2 cut(s)	314, 938
BseGI	GGATG	1 cut(s)	934
BseLI	CCNNNNNNNGG	2 cut(s)	524, 761
BseMII	CTCAG	4 cut(s)	92, 129, 177, 642
BseNI	ACTGG	4 cut(s)	375, 553, 1052, 1146
BseXI	GCAGC	2 cut(s)	2, 946
BsgI	GTGCAG	1 cut(s)	425
BshFI	GGCC	1 cut(s)	51
BshNI	GGYRCC	1 cut(s)	257
BsiHKAI	GWGCWC	2 cut(s)	121, 517
BsiSI	CCGG	2 cut(s)	83, 938
BslFI	GGGAC	1 cut(s)	908
BslI	CCNNNNNNNGG	2 cut(s)	524, 761
BsmAI	GTCTC	1 cut(s)	571
BsmFI	GGGAC	1 cut(s)	908
BsmI	GAATGC	1 cut(s)	139
BsnI	GGCC	1 cut(s)	51
Bsp1286I	GDGCHC	3 cut(s)	121, 517, 772
Bsp143I	GATC	4 cut(s)	199, 327, 463, 856
Bsp1720I	GCTNAGC	1 cut(s)	186
BspACI	CCGC	1 cut(s)	344
BspANI	GGCC	1 cut(s)	51
BspCNI	CTCAG	4 cut(s)	93, 130, 178, 641
BspLI	GGNNCC	3 cut(s)	259, 896, 1146
BspMAI	CTGCAG	1 cut(s)	57
BspPI	GGATC	1 cut(s)	864
BspQI	GCTCTTC	2 cut(s)	70, 909
BspT107I	GGYRCC	1 cut(s)	257
BspTI	CTTAAG	1 cut(s)	823
BsrI	ACTGG	4 cut(s)	375, 553, 1052, 1146
BssECI	CCNNGG	2 cut(s)	314, 938
BssMI	GATC	4 cut(s)	199, 327, 463, 856
BssNAI	GTATAC	1 cut(s)	505
Bst1107I	GTATAC	1 cut(s)	505
Bst4CI	ACNGT	5 cut(s)	9, 123, 262, 289, 1018
Bst6I	CTCTTC	3 cut(s)	70, 909, 1013
BstAFI	CTTAAG	1 cut(s)	823
BstC8I	GCNNGC	6 cut(s)	20, 53, 183, 233, 430, 1130
BstDEI	CTNAG	4 cut(s)	101, 138, 186, 628
BstEII	GGTNACC	1 cut(s)	554
BstF5I	GGATG	1 cut(s)	934
BstKTI	GATC	4 cut(s)	202, 330, 466, 859
BstMAI	GTCTC	1 cut(s)	571
BstMBI	GATC	4 cut(s)	199, 327, 463, 856
BstMWI	GCNNNNNNNGC	3 cut(s)	24, 187, 776
BstNSI	RCATGY	1 cut(s)	100
BstPI	GGTNACC	1 cut(s)	554
BstSCI	CCNGG	1 cut(s)	937
BstSFI	CTRYAG	1 cut(s)	53
BstV1I	GCAGC	2 cut(s)	2, 946
BstX2I	RGATCY	1 cut(s)	327
BstYI	RGATCY	1 cut(s)	327
BstZ17I	GTATAC	1 cut(s)	505
BsuI	GTATCC	1 cut(s)	725
BsuRI	GGCC	1 cut(s)	51
BtsCI	GGATG	1 cut(s)	934
BtsIMutI	CAGTG	2 cut(s)	119, 1139
Cac8I	GCNNGC	6 cut(s)	20, 53, 183, 233, 430, 1130
Cfr13I	GGNCC	2 cut(s)	248, 895
Csp6I	GTAC	4 cut(s)	258, 368, 620, 646
CviAII	CATG	9 cut(s)	97, 203, 209, 394, 560, 718, 891, 956, 1064
CviQI	GTAC	4 cut(s)	258, 368, 620, 646
DdeI	CTNAG	4 cut(s)	101, 138, 186, 628
DpnI	GATC	4 cut(s)	201, 329, 465, 858
DpnII	GATC	4 cut(s)	199, 327, 463, 856
DriI	GACNNNNNGTC	1 cut(s)	705
Eam1104I	CTCTTC	3 cut(s)	70, 909, 1013
Eam1105I	GACNNNNNGTC	1 cut(s)	705
EarI	CTCTTC	3 cut(s)	70, 909, 1013
Ecl136II	GAGCTC	1 cut(s)	515
Eco24I	GRGCYC	2 cut(s)	517, 772
Eco47I	GGWCC	2 cut(s)	248, 895
Eco53kI	GAGCTC	1 cut(s)	515
Eco91I	GGTNACC	1 cut(s)	554
EcoICRI	GAGCTC	1 cut(s)	515
EcoO65I	GGTNACC	1 cut(s)	554
EcoT38I	GRGCYC	2 cut(s)	517, 772
FaeI	CATG	9 cut(s)	100, 206, 212, 397, 563, 721, 894, 959, 1067
FalI	AAGNNNNNCTT	2 cut(s)	992, 1024
FaqI	GGGAC	1 cut(s)	908
FatI	CATG	9 cut(s)	96, 202, 208, 393, 559, 717, 890, 955, 1063
FblI	GTMKAC	2 cut(s)	36, 504
Fnu4HI	GCNGC	2 cut(s)	16, 960
FokI	GGATG	1 cut(s)	921
FriOI	GRGCYC	2 cut(s)	517, 772
Fsp4HI	GCNGC	2 cut(s)	16, 960
FspBI	CTAG	4 cut(s)	414, 458, 608, 879
GluI	GCNGC	2 cut(s)	16, 960
GsuI	CTGGAG	2 cut(s)	501, 570
HaeIII	GGCC	1 cut(s)	51
HapII	CCGG	2 cut(s)	83, 938
Hin1II	CATG	9 cut(s)	100, 206, 212, 397, 563, 721, 894, 959, 1067
HincII	GTYRAC	1 cut(s)	37
HindII	GTYRAC	1 cut(s)	37
HinfI	GANTC	5 cut(s)	302, 310, 533, 680, 692
HpaII	CCGG	2 cut(s)	83, 938
Hpy166II	GTNNAC	5 cut(s)	37, 77, 411, 505, 646
Hpy188I	TCNGA	7 cut(s)	109, 127, 315, 468, 631, 685, 1165
Hpy188III	TCNNGA	6 cut(s)	296, 421, 518, 589, 677, 1012
Hpy8I	GTNNAC	5 cut(s)	37, 77, 411, 505, 646
HpyAV	CCTTC	6 cut(s)	418, 518, 765, 939, 1070, 1093
HpyCH4III	ACNGT	5 cut(s)	9, 123, 262, 289, 1018
HpyCH4IV	ACGT	1 cut(s)	633
HpyF10VI	GCNNNNNNNGC	3 cut(s)	24, 187, 776
HpyF3I	CTNAG	4 cut(s)	101, 138, 186, 628
HpySE526I	ACGT	1 cut(s)	633
Hsp92II	CATG	9 cut(s)	100, 206, 212, 397, 563, 721, 894, 959, 1067
KpnI	GGTACC	1 cut(s)	261
Kzo9I	GATC	4 cut(s)	199, 327, 463, 856
LguI	GCTCTTC	2 cut(s)	70, 909
LmnI	GCTCC	2 cut(s)	116, 520
Lsp1109I	GCAGC	2 cut(s)	2, 946
LweI	GCATC	3 cut(s)	426, 1018, 1126
MaeI	CTAG	4 cut(s)	414, 458, 608, 879
MaeII	ACGT	1 cut(s)	633
MaeIII	GTNAC	4 cut(s)	3, 289, 554, 707
MalI	GATC	4 cut(s)	201, 329, 465, 858
MboI	GATC	4 cut(s)	199, 327, 463, 856
MboII	GAAGA	5 cut(s)	57, 157, 485, 926, 1000
MfeI	CAATTG	2 cut(s)	843, 1104
MflI	RGATCY	1 cut(s)	327
MhlI	GDGCHC	3 cut(s)	121, 517, 772
MluCI	AATT	7 cut(s)	376, 439, 476, 843, 1033, 1069, 1104
MlyI	GAGTC	1 cut(s)	701
MmeI	TCCRAC	2 cut(s)	105, 378
MnlI	CCTC	8 cut(s)	96, 267, 309, 328, 394, 545, 585, 783
MroXI	GAANNNNTTC	1 cut(s)	659
MseI	TTAA	6 cut(s)	11, 93, 227, 824, 909, 1122
MslI	CAYNNNNRTG	1 cut(s)	207
MspCI	CTTAAG	1 cut(s)	823
MspI	CCGG	2 cut(s)	83, 938
MspR9I	CCNGG	1 cut(s)	939
MunI	CAATTG	2 cut(s)	843, 1104
Mva1269I	GAATGC	1 cut(s)	139
MwoI	GCNNNNNNNGC	3 cut(s)	24, 187, 776
NciI	CCSGG	1 cut(s)	939
NdeII	GATC	4 cut(s)	199, 327, 463, 856
NlaIII	CATG	9 cut(s)	100, 206, 212, 397, 563, 721, 894, 959, 1067
NlaIV	GGNNCC	3 cut(s)	259, 896, 1146
NmuCI	GTSAC	1 cut(s)	707
NspI	RCATGY	1 cut(s)	100
PciSI	GCTCTTC	2 cut(s)	70, 909
PctI	GAATGC	1 cut(s)	139
PdmI	GAANNNNTTC	1 cut(s)	659
PfeI	GAWTC	4 cut(s)	302, 310, 533, 680
PkrI	GCNGC	2 cut(s)	17, 961
PleI	GAGTC	1 cut(s)	700
PpsI	GAGTC	1 cut(s)	700
PshBI	ATTAAT	1 cut(s)	1122
PsiI	TTATAA	1 cut(s)	804
Psp124BI	GAGCTC	1 cut(s)	517
PspEI	GGTNACC	1 cut(s)	554
PspN4I	GGNNCC	3 cut(s)	259, 896, 1146
PspPI	GGNCC	2 cut(s)	248, 895
PstI	CTGCAG	1 cut(s)	57
PsuI	RGATCY	1 cut(s)	327
RsaI	GTAC	4 cut(s)	259, 369, 621, 647
RsaNI	GTAC	4 cut(s)	258, 368, 620, 646
RseI	CAYNNNNRTG	1 cut(s)	207
SacI	GAGCTC	1 cut(s)	517
SalI	GTCGAC	1 cut(s)	35
SapI	GCTCTTC	2 cut(s)	70, 909
SaqAI	TTAA	6 cut(s)	11, 93, 227, 824, 909, 1122
SatI	GCNGC	2 cut(s)	16, 960
Sau3AI	GATC	4 cut(s)	199, 327, 463, 856
Sau96I	GGNCC	2 cut(s)	248, 895
SchI	GAGTC	1 cut(s)	701
ScrFI	CCNGG	1 cut(s)	939
SduI	GDGCHC	3 cut(s)	121, 517, 772
SfaNI	GCATC	3 cut(s)	426, 1018, 1126
SfcI	CTRYAG	1 cut(s)	53
SinI	GGWCC	2 cut(s)	248, 895
SmiMI	CAYNNNNRTG	1 cut(s)	207
SmlI	CTYRAG	4 cut(s)	28, 271, 589, 823
SmoI	CTYRAG	4 cut(s)	28, 271, 589, 823
Sse9I	AATT	7 cut(s)	376, 439, 476, 843, 1033, 1069, 1104
SsiI	CCGC	1 cut(s)	344
SspMI	CTAG	4 cut(s)	414, 458, 608, 879
SstI	GAGCTC	1 cut(s)	517
StyD4I	CCNGG	1 cut(s)	937
TaaI	ACNGT	5 cut(s)	9, 123, 262, 289, 1018
TaiI	ACGT	1 cut(s)	636
TaqI	TCGA	1 cut(s)	36
TasI	AATT	7 cut(s)	376, 439, 476, 843, 1033, 1069, 1104
TatI	WGTACW	2 cut(s)	367, 645
TfiI	GAWTC	4 cut(s)	302, 310, 533, 680
Tru1I	TTAA	6 cut(s)	11, 93, 227, 824, 909, 1122
Tru9I	TTAA	6 cut(s)	11, 93, 227, 824, 909, 1122
TscAI	CASTG	2 cut(s)	126, 1146
TseFI	GTSAC	1 cut(s)	707
TseI	GCWGC	2 cut(s)	15, 959
Tsp45I	GTSAC	1 cut(s)	707
TspDTI	ATGAA	9 cut(s)	315, 338, 537, 765, 927, 944, 1007, 1052, 1112
TspGWI	ACGGA	2 cut(s)	103, 572
TspRI	CASTG	2 cut(s)	126, 1146
Vha464I	CTTAAG	1 cut(s)	823
VpaK11BI	GGWCC	2 cut(s)	248, 895
VspI	ATTAAT	1 cut(s)	1122
XapI	RAATTY	2 cut(s)	376, 476
XceI	RCATGY	1 cut(s)	100
XcmI	CCANNNNNNNNNTGG	2 cut(s)	566, 970
XmiI	GTMKAC	2 cut(s)	36, 504
XmnI	GAANNNNTTC	1 cut(s)	659
XspI	CTAG	4 cut(s)	414, 458, 608, 879

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.