RchiOBHm_Chr6g0300661

UDP-D-xylose L-fucose alpha-1,3-D-xylosyltransferase 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0002462
Physical Location & Seq
Reverse (-)
61436863 .. 61439217
2355 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27002

Sequence Viewer

Length: 1248 bp
ATGGCGCTTCGCCGAGACAAGGCGGCGGCTCAGTCTTCACTTCGCGGATCTCGAATTCTTGTGGCCATTGTCGTCGGAGTCCTTATCGGCTGTGTCTTCGCCTTCTTGTATCCTCACGGCTTCTTCTCCAACTCTGATGATCCGCTCATCCAAAACCGCCGAATCGGGAAATCGGACCTCCAGAGTAGCTCTTCTCAATGTGAACCACCGGAACGGATTAACATGCTGAGGTCTGATATTGGAGCACTGTCGGACAAGAATGCTGAGTTGAAGAAGCAGATACAAGACCTAACTGAAAAGCTACGGCTGGCTGAGCAGGGGAAAGATCATGCACATGAGCAGTTTTCAGTGTTAAGCAAGCCACACAAGGCTGGCCCTTTTGGTACCGTCAAGGGCTTGAGGACTAACCCGACTGTTACTCCTGATGAATCTGTGAATCCGAGGTTGGCAAAGATCTTGGAGGAAGTAGCGGTTCATAAAGAACTCATAGTTGTACTGGCAAATTCTAATGTGAAATCCATGTTGGAGGTGCAGTTTACGAGCATCAAGAAGGCTGACATAACCAATTATCTTGTTGTTGCATTAGACGATCAGATTGAAGAATTTTGCAAAGCCAATGATGTTCCTGTATACAGGAGAGCTCCAGATGAAGGTATTGATTCAGTTGCAAAGACTGGAGGTAACCATGCCGTCTCTGGGTTGAAGTTCCGTATCTTGAGGGAATTTTTGCAACTAGGTTATGGCGTACTTCTCTCAGATGTTGATATAGTGTACTTGCAGAATCCATTCAATCATCTCTATCGGGATTCCGATGTAGAGTCAATGACTGATGGTCACAATAACATGACAGCTTATGGATACAATGATGTTTTTGATGAACCTTCTATGGGTTGGGCTCGTTATGCTCATACAATGAGGATATGGCTTTTGGATCGTGTGGCTGGACGGCTTTCTAGGGAAAAAGCATGGGACCAAGCTGTTTTTAATGAAGAGCTGTATTTCCCTTCACATCCGGGGTATGATGGGCTTCATGCTGCCAAGAGAACGATGGATTTCTATATGTTTATGAACAGCAAGGTTCTCTTCAAGACGGTCAGGAAAGATGCTAATTTGAAAAAGTTGAAACCAGTAATCCTTCATGTAAATTACCACCCAGACAAACTTCCAAGAATGAAGGCAATTGTAGAGTTCTATATTAATGGCAAGCAAGATGCGCTGGAACCTTTCCCTGATGGTTCTGATTGGTAG

Protein Analysis

415

Amino Acids

46.88

Weight (kDa)

7.23

Isoelectric Point (pI)

37.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleotid_trans PF03407 187 - 388 8.3e-37 Nucleotide-diphospho-sugar transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 383
AccB1I GGYRCC 1 cut(s) 383
AccBSI CCGCTC 1 cut(s) 145
AccI GTMKAC 1 cut(s) 630
AccII CGCG 1 cut(s) 45
AciI CCGC 6 cut(s) 23, 26, 45, 143, 157, 470
AclWI GGATC 3 cut(s) 55, 134, 939
AcoI YGGCCR 1 cut(s) 63
AcsI RAATTY 4 cut(s) 54, 502, 602, 722
AfaI GTAC 4 cut(s) 385, 495, 747, 773
AfiI CCNNNNNNNGG 4 cut(s) 19, 650, 696, 887
AgsI TTSAA 7 cut(s) 271, 599, 703, 790, 1087, 1114, 1123
AhdI GACNNNNNGTC 1 cut(s) 831
AjuI GAANNNNNNNTTGG 4 cut(s) 428, 460, 506, 538
AluBI AGCT 6 cut(s) 189, 301, 641, 851, 977, 994
AluI AGCT 6 cut(s) 189, 301, 641, 851, 977, 994
Alw21I GWGCWC 2 cut(s) 247, 643
Alw26I GTCTC 2 cut(s) 9, 697
AlwI GGATC 3 cut(s) 55, 134, 939
AoxI GGCC 2 cut(s) 63, 373
ApeKI GCWGC 1 cut(s) 1034
ApoI RAATTY 4 cut(s) 54, 502, 602, 722
AseI ATTAAT 1 cut(s) 1197
Asp700I GAANNNNTTC 1 cut(s) 785
Asp718I GGTACC 1 cut(s) 383
AspLEI GCGC 2 cut(s) 7, 1216
AspS9I GGNCC 3 cut(s) 175, 374, 970
AsuC2I CCSGG 1 cut(s) 1014
AvaII GGWCC 2 cut(s) 175, 970
BalI TGGCCA 1 cut(s) 65
BanI GGYRCC 1 cut(s) 383
BanII GRGCYC 2 cut(s) 643, 898
BbsI GAAGAC 2 cut(s) 27, 88
Bbv12I GWGCWC 2 cut(s) 247, 643
BbvCI CCTCAGC 1 cut(s) 227
BbvI GCAGC 1 cut(s) 1021
BccI CCATC 4 cut(s) 824, 1016, 1042, 1226
BceAI ACGGC 4 cut(s) 133, 320, 674, 962
BciVI GTATCC 2 cut(s) 120, 851
BcnI CCSGG 1 cut(s) 1014
BcoDI GTCTC 2 cut(s) 9, 697
BfaI CTAG 2 cut(s) 734, 954
BfoI RGCGCY 1 cut(s) 8
BfuI GTATCC 2 cut(s) 120, 851
BglII AGATCT 1 cut(s) 453
BisI GCNGC 3 cut(s) 24, 27, 1035
BlpI GCTNAGC 1 cut(s) 312
BlsI GCNGC 3 cut(s) 25, 28, 1036
Bme1390I CCNGG 1 cut(s) 1014
Bme18I GGWCC 2 cut(s) 175, 970
BmeRI GACNNNNNGTC 1 cut(s) 831
BmgT120I GGNCC 3 cut(s) 175, 374, 970
BmiI GGNNCC 3 cut(s) 385, 971, 1221
BmrFI CCNGG 1 cut(s) 1014
BmsI GCATC 3 cut(s) 552, 1093, 1201
BpiI GAAGAC 2 cut(s) 27, 88
BpmI CTGGAG 3 cut(s) 164, 627, 696
Bpu10I CCTNAGC 1 cut(s) 227
Bpu1102I GCTNAGC 1 cut(s) 312
BpuEI CTTGAG 2 cut(s) 418, 736
BpuMI CCSGG 1 cut(s) 1014
BsaJI CCNNGG 2 cut(s) 440, 1013
BsaWI WCCGGW 1 cut(s) 208
BsaXI ACNNNNNCTCC 4 cut(s) 403, 433, 518, 548
Bsc4I CCNNNNNNNGG 4 cut(s) 19, 650, 696, 887
Bse1I ACTGG 3 cut(s) 501, 679, 1127
BseDI CCNNGG 2 cut(s) 440, 1013
BseGI GGATG 2 cut(s) 147, 1009
BseLI CCNNNNNNNGG 4 cut(s) 19, 650, 696, 887
BseMII CTCAG 5 cut(s) 44, 218, 255, 303, 768
BseNI ACTGG 3 cut(s) 501, 679, 1127
BseXI GCAGC 1 cut(s) 1021
BsgI GTGCAG 1 cut(s) 551
Bsh1236I CGCG 1 cut(s) 45
BshFI GGCC 2 cut(s) 65, 375
BshNI GGYRCC 1 cut(s) 383
BsiHKAI GWGCWC 2 cut(s) 247, 643
BsiSI CCGG 2 cut(s) 209, 1013
BslFI GGGAC 1 cut(s) 983
BslI CCNNNNNNNGG 4 cut(s) 19, 650, 696, 887
BsmAI GTCTC 2 cut(s) 9, 697
BsmBI CGTCTC 1 cut(s) 697
BsmFI GGGAC 1 cut(s) 983
BsmI GAATGC 1 cut(s) 265
BsnI GGCC 2 cut(s) 65, 375
Bsp1286I GDGCHC 3 cut(s) 247, 643, 898
Bsp143I GATC 6 cut(s) 47, 139, 325, 453, 589, 931
Bsp1720I GCTNAGC 1 cut(s) 312
BspACI CCGC 6 cut(s) 23, 26, 45, 143, 157, 470
BspANI GGCC 2 cut(s) 65, 375
BspCNI CTCAG 5 cut(s) 43, 219, 256, 304, 767
BspFNI CGCG 1 cut(s) 45
BspLI GGNNCC 3 cut(s) 385, 971, 1221
BspPI GGATC 3 cut(s) 55, 134, 939
BspQI GCTCTTC 2 cut(s) 196, 984
BspT107I GGYRCC 1 cut(s) 383
BsrBI CCGCTC 1 cut(s) 145
BsrI ACTGG 3 cut(s) 501, 679, 1127
BssECI CCNNGG 2 cut(s) 440, 1013
BssMI GATC 6 cut(s) 47, 139, 325, 453, 589, 931
BssNAI GTATAC 1 cut(s) 631
Bst1107I GTATAC 1 cut(s) 631
Bst4CI ACNGT 4 cut(s) 249, 388, 415, 1093
Bst6I CTCTTC 3 cut(s) 196, 984, 1088
BstC8I GCNNGC 4 cut(s) 309, 359, 373, 1205
BstDEI CTNAG 5 cut(s) 30, 227, 264, 312, 754
BstEII GGTNACC 1 cut(s) 680
BstF5I GGATG 2 cut(s) 147, 1009
BstFNI CGCG 1 cut(s) 45
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 1216
BstKTI GATC 6 cut(s) 50, 142, 328, 456, 592, 934
BstMAI GTCTC 2 cut(s) 9, 697
BstMBI GATC 6 cut(s) 47, 139, 325, 453, 589, 931
BstMWI GCNNNNNNNGC 3 cut(s) 313, 902, 1213
BstNSI RCATGY 1 cut(s) 226
BstPI GGTNACC 1 cut(s) 680
BstSCI CCNGG 1 cut(s) 1012
BstUI CGCG 1 cut(s) 45
BstV1I GCAGC 1 cut(s) 1021
BstV2I GAAGAC 2 cut(s) 27, 88
BstX2I RGATCY 2 cut(s) 47, 453
BstYI RGATCY 2 cut(s) 47, 453
BstZ17I GTATAC 1 cut(s) 631
BsuI GTATCC 2 cut(s) 120, 851
BsuRI GGCC 2 cut(s) 65, 375
BtsCI GGATG 2 cut(s) 147, 1009
BtsIMutI CAGTG 2 cut(s) 245, 354
Cac8I GCNNGC 4 cut(s) 309, 359, 373, 1205
CfoI GCGC 2 cut(s) 7, 1216
Cfr13I GGNCC 3 cut(s) 175, 374, 970
Csp6I GTAC 4 cut(s) 384, 494, 746, 772
CviAII CATG 9 cut(s) 223, 329, 335, 520, 686, 844, 966, 1031, 1139
CviQI GTAC 4 cut(s) 384, 494, 746, 772
DdeI CTNAG 5 cut(s) 30, 227, 264, 312, 754
DpnI GATC 6 cut(s) 49, 141, 327, 455, 591, 933
DpnII GATC 6 cut(s) 47, 139, 325, 453, 589, 931
DriI GACNNNNNGTC 1 cut(s) 831
EaeI YGGCCR 1 cut(s) 63
Eam1104I CTCTTC 3 cut(s) 196, 984, 1088
Eam1105I GACNNNNNGTC 1 cut(s) 831
EarI CTCTTC 3 cut(s) 196, 984, 1088
Ecl136II GAGCTC 1 cut(s) 641
Eco24I GRGCYC 2 cut(s) 643, 898
Eco47I GGWCC 2 cut(s) 175, 970
Eco53kI GAGCTC 1 cut(s) 641
Eco91I GGTNACC 1 cut(s) 680
EcoICRI GAGCTC 1 cut(s) 641
EcoO65I GGTNACC 1 cut(s) 680
EcoRI GAATTC 1 cut(s) 54
EcoT38I GRGCYC 2 cut(s) 643, 898
Esp3I CGTCTC 1 cut(s) 697
FaeI CATG 9 cut(s) 226, 332, 338, 523, 689, 847, 969, 1034, 1142
FalI AAGNNNNNCTT 2 cut(s) 1067, 1099
FaqI GGGAC 1 cut(s) 983
FatI CATG 9 cut(s) 222, 328, 334, 519, 685, 843, 965, 1030, 1138
FblI GTMKAC 1 cut(s) 630
Fnu4HI GCNGC 3 cut(s) 24, 27, 1035
FokI GGATG 2 cut(s) 134, 996
FriOI GRGCYC 2 cut(s) 643, 898
Fsp4HI GCNGC 3 cut(s) 24, 27, 1035
FspBI CTAG 2 cut(s) 734, 954
GlaI GCGC 2 cut(s) 6, 1215
GluI GCNGC 3 cut(s) 24, 27, 1035
GsuI CTGGAG 3 cut(s) 164, 627, 696
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 2 cut(s) 65, 375
HapII CCGG 2 cut(s) 209, 1013
HhaI GCGC 2 cut(s) 7, 1216
Hin1II CATG 9 cut(s) 226, 332, 338, 523, 689, 847, 969, 1034, 1142
Hin6I GCGC 2 cut(s) 5, 1214
HinP1I GCGC 2 cut(s) 5, 1214
HinfI GANTC 8 cut(s) 78, 162, 428, 436, 659, 781, 806, 818
HpaII CCGG 2 cut(s) 209, 1013
Hpy166II GTNNAC 4 cut(s) 203, 537, 631, 772
Hpy8I GTNNAC 4 cut(s) 203, 537, 631, 772
Hpy99I CGWCG 1 cut(s) 77
HpyAV CCTTC 7 cut(s) 112, 544, 644, 891, 1014, 1145, 1168
HpyCH4III ACNGT 4 cut(s) 249, 388, 415, 1093
HpyCH4V TGCA 7 cut(s) 332, 532, 581, 609, 668, 730, 778
HpyF10VI GCNNNNNNNGC 3 cut(s) 313, 902, 1213
HpyF3I CTNAG 5 cut(s) 30, 227, 264, 312, 754
Hsp92II CATG 9 cut(s) 226, 332, 338, 523, 689, 847, 969, 1034, 1142
HspAI GCGC 2 cut(s) 5, 1214
KpnI GGTACC 1 cut(s) 387
Kzo9I GATC 6 cut(s) 47, 139, 325, 453, 589, 931
LguI GCTCTTC 2 cut(s) 196, 984
LmnI GCTCC 2 cut(s) 242, 646
Lsp1109I GCAGC 1 cut(s) 1021
LweI GCATC 3 cut(s) 552, 1093, 1201
MaeI CTAG 2 cut(s) 734, 954
MaeIII GTNAC 3 cut(s) 415, 680, 833
MalI GATC 6 cut(s) 49, 141, 327, 455, 591, 933
MbiI CCGCTC 1 cut(s) 145
MboI GATC 6 cut(s) 47, 139, 325, 453, 589, 931
MboII GAAGA 8 cut(s) 27, 88, 115, 183, 283, 611, 1001, 1075
MfeI CAATTG 1 cut(s) 1179
MflI RGATCY 2 cut(s) 47, 453
MhlI GDGCHC 3 cut(s) 247, 643, 898
MlsI TGGCCA 1 cut(s) 65
MluCI AATT 8 cut(s) 54, 502, 565, 602, 722, 1108, 1144, 1179
MluNI TGGCCA 1 cut(s) 65
MlyI GAGTC 2 cut(s) 87, 827
MmeI TCCRAC 4 cut(s) 55, 153, 231, 504
Mox20I TGGCCA 1 cut(s) 65
MroXI GAANNNNTTC 1 cut(s) 785
MscI TGGCCA 1 cut(s) 65
MseI TTAA 4 cut(s) 219, 353, 984, 1197
MslI CAYNNNNRTG 1 cut(s) 333
Msp20I TGGCCA 1 cut(s) 65
MspI CCGG 2 cut(s) 209, 1013
MspR9I CCNGG 1 cut(s) 1014
MunI CAATTG 1 cut(s) 1179
Mva1269I GAATGC 1 cut(s) 265
MvnI CGCG 1 cut(s) 45
MwoI GCNNNNNNNGC 3 cut(s) 313, 902, 1213
NciI CCSGG 1 cut(s) 1014
NdeII GATC 6 cut(s) 47, 139, 325, 453, 589, 931
NlaIII CATG 9 cut(s) 226, 332, 338, 523, 689, 847, 969, 1034, 1142
NlaIV GGNNCC 3 cut(s) 385, 971, 1221
NmeAIII GCCGAG 1 cut(s) 38
NmuCI GTSAC 1 cut(s) 833
NspI RCATGY 1 cut(s) 226
PciSI GCTCTTC 2 cut(s) 196, 984
PcsI WCGNNNNNNNCGW 1 cut(s) 49
PctI GAATGC 1 cut(s) 265
PdmI GAANNNNTTC 1 cut(s) 785
PfeI GAWTC 6 cut(s) 162, 428, 436, 659, 781, 806
PkrI GCNGC 3 cut(s) 25, 28, 1036
PleI GAGTC 2 cut(s) 86, 826
PpsI GAGTC 2 cut(s) 86, 826
PshBI ATTAAT 1 cut(s) 1197
Psp124BI GAGCTC 1 cut(s) 643
PspEI GGTNACC 1 cut(s) 680
PspN4I GGNNCC 3 cut(s) 385, 971, 1221
PspPI GGNCC 3 cut(s) 175, 374, 970
PsuI RGATCY 2 cut(s) 47, 453
RsaI GTAC 4 cut(s) 385, 495, 747, 773
RsaNI GTAC 4 cut(s) 384, 494, 746, 772
RseI CAYNNNNRTG 1 cut(s) 333
SacI GAGCTC 1 cut(s) 643
SapI GCTCTTC 2 cut(s) 196, 984
SaqAI TTAA 4 cut(s) 219, 353, 984, 1197
SatI GCNGC 3 cut(s) 24, 27, 1035
Sau3AI GATC 6 cut(s) 47, 139, 325, 453, 589, 931
Sau96I GGNCC 3 cut(s) 175, 374, 970
SchI GAGTC 2 cut(s) 87, 827
ScrFI CCNGG 1 cut(s) 1014
SduI GDGCHC 3 cut(s) 247, 643, 898
SfaNI GCATC 3 cut(s) 552, 1093, 1201
SinI GGWCC 2 cut(s) 175, 970
SmiMI CAYNNNNRTG 1 cut(s) 333
SmlI CTYRAG 2 cut(s) 397, 715
SmoI CTYRAG 2 cut(s) 397, 715
Sse9I AATT 8 cut(s) 54, 502, 565, 602, 722, 1108, 1144, 1179
SsiI CCGC 6 cut(s) 23, 26, 45, 143, 157, 470
SspMI CTAG 2 cut(s) 734, 954
SstI GAGCTC 1 cut(s) 643
StyD4I CCNGG 1 cut(s) 1012
TaaI ACNGT 4 cut(s) 249, 388, 415, 1093
TaqI TCGA 1 cut(s) 52
TasI AATT 8 cut(s) 54, 502, 565, 602, 722, 1108, 1144, 1179
TatI WGTACW 2 cut(s) 493, 771
TauI GCSGC 2 cut(s) 26, 29
TfiI GAWTC 6 cut(s) 162, 428, 436, 659, 781, 806
Tru1I TTAA 4 cut(s) 219, 353, 984, 1197
Tru9I TTAA 4 cut(s) 219, 353, 984, 1197
TscAI CASTG 2 cut(s) 252, 354
TseFI GTSAC 1 cut(s) 833
TseI GCWGC 1 cut(s) 1034
Tsp45I GTSAC 1 cut(s) 833
TspDTI ATGAA 9 cut(s) 441, 464, 663, 891, 1002, 1019, 1082, 1127, 1187
TspGWI ACGGA 2 cut(s) 229, 698
TspRI CASTG 2 cut(s) 252, 354
VpaK11BI GGWCC 2 cut(s) 175, 970
VspI ATTAAT 1 cut(s) 1197
XapI RAATTY 4 cut(s) 54, 502, 602, 722
XceI RCATGY 1 cut(s) 226
XcmI CCANNNNNNNNNTGG 2 cut(s) 692, 1045
XmiI GTMKAC 1 cut(s) 630
XmnI GAANNNNTTC 1 cut(s) 785
XspI CTAG 2 cut(s) 734, 954
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.