Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002462

Physical Location & Seq

Genomic Coordinates Reverse (-)

28194005 .. 28196033

Gene Structure 2029 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G75110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGGCGGGTCGCAGAGACAGGATCCAACAGCTCCGTGGATCTCGAATTGCGATTGCCATCTTTGTCGGAATTCTTATCGGCTGTGTCTGTTCCGTCTTGTTCCCGAACGGCTTCTTTAACTCGGGATCATCCTTGATTGCTAACGAAGAACGCATTTCGAAATCAACCTCTACGGATGGATTGGCTTCATGTGAATCATCTGAACGAGTCAAAATGCTCAAATCAGACTTTTCAATTATCTCGGTAAAGAACGCAGAGTTAAGGAAGCAGGTAAGAGAACTAACGGAGAAGGTACGGTTGGCGGAACAGGAAACAGAGAATGCAAGGAAACAAGTCTTAGTTTTGGGATCAGAGATAAAGGCAGGGCCTTTTGGTACTGTCAAGAGTCTGAGAACTAATCCAACTGTTGTTCCTGATGAGTCTGTTAACCCGAGATTAGCTAAGCTTTTAGAGAAAGTAGCTGTCAATAAAGAGATCATTGTGGTTCTTGCAAATTCAAATGTGAAACCAATGTTGGAGTTGCAGATTGCTAGTGTAAAGAGAGTTGGTATTCAAAACTACCTCATTGTCGCGTTGGATGATTCCATGGAAAGTTTCTGCGAATCGAAGGAGGTTGTGTTTTACAAGCGAGATCCAGATAAAGCAGTGGACATGGTTGGAAAAAGCGGAGGTAATCACGCTGTTTCCGGACTGAAGTTCCGCGTCTTAAGAGAGTTCTTGCAGCTTGGTTACAGTGTTCTTCTATCGGATGTGGACATTGTCTTCTTGCAGAATCCTTTTAGTCATTTACACAGAGACTCTGATGTTGAGTCAATGAGTGATGGTCACGACAATAACACGGCTTATGGCTTCAACGATGTGTTTGATGAACCATCAATGGGATGGGCTAGGTATGCACACACAATGAGGATATGGGTTTTCAATTCAGGGTTTTTCTATCTAAGACCAACTATTCCTTCAATAGACCTACTCGATCGTGTGGCAGATACACTCTCTAAGTCAGAGGCATGGGACCAAGCGGTTTTCAACGAGCAACTCTTTTACCCTTCGCATCCAGGGTACACTGGCTTACACGCTTCCAAGAGAGTCATGGATATGTACGAGTTCATGAACAGTAAGGTACTCTTCAAAACAGTGAGAAAGAATCAAGAACTGAAGAAGTTGAAGCCAGTGATTGTGCATCTCAATTACCATCCAGATAAACTCGAACGAATGCACGCTGTGGTAGAGTTCTACGTTAATGGCAAACAAGATGCGTTGGATAGCTTTCCCGATGGTTCAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016740 GO:0016757 GO:0021700 GO:0022622 GO:0030154 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0071554 GO:0071695 GO:0071840 GO:0080147 GO:0090558 GO:0090627 GO:0097708 GO:0098791 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00514 map00514

Pfam Domains

Protein Families

Nucleotid_trans

Protein Analysis

428

Amino Acids

48.17

Weight (kDa)

7.16

Isoelectric Point (pI)

33.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nucleotid_trans	PF03407	184 - 405	1.5e-51	Nucleotide-diphospho-sugar transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19360 AT1G19360 AT1G75110
fragaria_vesca	FvH4_2g08270 FvH4_2g08270 FvH4_2g08270 FvH4_2g08270 FvH4_2g40081
malus_domestica	MD08G1032600.v1.1 MD10G1080700.v1.1 MD15G1029300.v1.1
prunus_persica	Prupe.1G382100_v2.0.a1 Prupe.8G102000_v2.0.a1
pyrus_communis	pycom05g06040 pycom08g02590 pycom10g06390 pycom15g02600
rosa_chinensis	RchiOBHm_Chr6g0263151 RchiOBHm_Chr6g0300661
rosa_laevigata	RLG00000011313 RLG00000014368
rosa_multiflora	Rmu_co8387041.1_g000001 Rmu_sc0004226.1_g000014 Rmu_sc0014374.1_g000002 Rmu_sc0015149.1_g000002
rosa_roxburghii	Rroxscaffold_176G00430950 Rroxscaffold_7G00167540 Rroxscaffold_7G00204620
rosa_rugosa	Rorug06G0003900 Rorug06G0298200
rosa_samantha	Rh6AG123000 Rh6AG410900 Rh6BG118000 Rh6BG418100 Rh6CG116200 Rh6CG425600 Rh6DG104700 Rh6DG411000
rosa_wichuraiana	Rw0G002190 Rw6G010570 Rw6G035950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	259
AccII	CGCG	2 cut(s)	572, 702
AccIII	TCCGGA	1 cut(s)	686
AciI	CCGC	5 cut(s)	5, 302, 666, 700, 1019
AclWI	GGATC	6 cut(s)	16, 29, 46, 133, 355, 626
AcsI	RAATTY	2 cut(s)	69, 493
AcuI	CTGAAG	2 cut(s)	713, 1175
AdeI	CACNNNGTG	1 cut(s)	1222
AfaI	GTAC	5 cut(s)	294, 376, 1061, 1100, 1122
AfiI	CCNNNNNNNGG	1 cut(s)	878
AflII	CTTAAG	1 cut(s)	706
AgsI	TTSAA	9 cut(s)	234, 498, 554, 853, 922, 960, 1027, 1129, 1165
AjnI	CCWGG	1 cut(s)	1054
AjuI	GAANNNNNNNTTGG	6 cut(s)	281, 313, 497, 529, 940, 972
AluBI	AGCT	6 cut(s)	31, 440, 445, 461, 724, 1266
AluI	AGCT	6 cut(s)	31, 440, 445, 461, 724, 1266
Alw26I	GTCTC	2 cut(s)	9, 789
AlwI	GGATC	6 cut(s)	16, 29, 46, 133, 355, 626
Ama87I	CYCGRG	2 cut(s)	121, 430
Aor13HI	TCCGGA	1 cut(s)	686
AoxI	GGCC	1 cut(s)	365
ApeKI	GCWGC	1 cut(s)	721
ApoI	RAATTY	2 cut(s)	69, 493
Asp700I	GAANNNNTTC	1 cut(s)	110
AspS9I	GGNCC	2 cut(s)	365, 1012
AsuII	TTCGAA	1 cut(s)	158
AvaI	CYCGRG	2 cut(s)	121, 430
AvaII	GGWCC	1 cut(s)	1012
BamHI	GGATCC	1 cut(s)	21
BbsI	GAAGAC	1 cut(s)	754
BbvI	GCAGC	1 cut(s)	733
BccI	CCATC	7 cut(s)	65, 170, 815, 876, 880, 1200, 1268
BceAI	ACGGC	2 cut(s)	124, 855
BciT130I	CCWGG	1 cut(s)	1056
BcoDI	GTCTC	2 cut(s)	9, 789
BfaI	CTAG	2 cut(s)	531, 888
BfrI	CTTAAG	1 cut(s)	706
BfuAI	ACCTGC	1 cut(s)	259
BisI	GCNGC	1 cut(s)	722
BlpI	GCTNAGC	1 cut(s)	441
BlsI	GCNGC	1 cut(s)	723
Bme1390I	CCNGG	1 cut(s)	1056
Bme18I	GGWCC	1 cut(s)	1012
BmeT110I	CYCGRG	2 cut(s)	121, 430
BmgT120I	GGNCC	2 cut(s)	365, 1012
BmiI	GGNNCC	2 cut(s)	23, 1013
BmrFI	CCNGG	1 cut(s)	1056
BmsI	GCATC	3 cut(s)	1060, 1189, 1243
BpiI	GAAGAC	1 cut(s)	754
Bpu1102I	GCTNAGC	1 cut(s)	441
Bpu14I	TTCGAA	1 cut(s)	158
BsaBI	GATNNNNATC	1 cut(s)	56
BsaJI	CCNNGG	3 cut(s)	34, 585, 1055
BsaWI	WCCGGW	1 cut(s)	686
BsaXI	ACNNNNNCTCC	2 cut(s)	602, 632
Bsc4I	CCNNNNNNNGG	1 cut(s)	878
Bse1I	ACTGG	2 cut(s)	1069, 1169
Bse8I	GATNNNNATC	1 cut(s)	56
BseAI	TCCGGA	1 cut(s)	686
BseBI	CCWGG	1 cut(s)	1056
BseDI	CCNNGG	3 cut(s)	34, 585, 1055
BseGI	GGATG	7 cut(s)	128, 181, 583, 754, 887, 1051, 1192
BseJI	GATNNNNATC	1 cut(s)	56
BseLI	CCNNNNNNNGG	1 cut(s)	878
BseMII	CTCAG	1 cut(s)	380
BseNI	ACTGG	2 cut(s)	1069, 1169
BseXI	GCAGC	1 cut(s)	733
Bsh1236I	CGCG	2 cut(s)	572, 702
Bsh1285I	CGRYCG	1 cut(s)	976
BshFI	GGCC	1 cut(s)	367
BsiEI	CGRYCG	1 cut(s)	976
BsiHKCI	CYCGRG	2 cut(s)	121, 430
BsiSI	CCGG	1 cut(s)	687
BslFI	GGGAC	1 cut(s)	1025
BslI	CCNNNNNNNGG	1 cut(s)	878
BsmAI	GTCTC	2 cut(s)	9, 789
BsmFI	GGGAC	1 cut(s)	1025
BsmI	GAATGC	2 cut(s)	325, 1218
BsnI	GGCC	1 cut(s)	367
BsoBI	CYCGRG	2 cut(s)	121, 430
Bsp119I	TTCGAA	1 cut(s)	158
Bsp13I	TCCGGA	1 cut(s)	686
Bsp143I	GATC	7 cut(s)	21, 38, 125, 347, 474, 631, 973
Bsp1720I	GCTNAGC	1 cut(s)	441
Bsp19I	CCATGG	1 cut(s)	585
BspACI	CCGC	5 cut(s)	5, 302, 666, 700, 1019
BspANI	GGCC	1 cut(s)	367
BspCNI	CTCAG	1 cut(s)	381
BspEI	TCCGGA	1 cut(s)	686
BspFNI	CGCG	2 cut(s)	572, 702
BspHI	TCATGA	1 cut(s)	1107
BspLI	GGNNCC	2 cut(s)	23, 1013
BspMI	ACCTGC	1 cut(s)	259
BspPI	GGATC	6 cut(s)	16, 29, 46, 133, 355, 626
BspT104I	TTCGAA	1 cut(s)	158
BspTI	CTTAAG	1 cut(s)	706
BsrI	ACTGG	2 cut(s)	1069, 1169
BssECI	CCNNGG	3 cut(s)	34, 585, 1055
BssMI	GATC	7 cut(s)	21, 38, 125, 347, 474, 631, 973
BssT1I	CCWWGG	1 cut(s)	585
Bst2UI	CCWGG	1 cut(s)	1056
Bst4CI	ACNGT	6 cut(s)	297, 379, 406, 734, 1115, 1135
Bst6I	CTCTTC	1 cut(s)	1130
BstAFI	CTTAAG	1 cut(s)	706
BstBI	TTCGAA	1 cut(s)	158
BstC8I	GCNNGC	1 cut(s)	1218
BstDEI	CTNAG	5 cut(s)	337, 389, 441, 941, 996
BstDSI	CCRYGG	2 cut(s)	34, 585
BstF5I	GGATG	7 cut(s)	128, 181, 583, 754, 887, 1051, 1192
BstFNI	CGCG	2 cut(s)	572, 702
BstKTI	GATC	7 cut(s)	24, 41, 128, 350, 477, 634, 976
BstMAI	GTCTC	2 cut(s)	9, 789
BstMBI	GATC	7 cut(s)	21, 38, 125, 347, 474, 631, 973
BstMCI	CGRYCG	1 cut(s)	976
BstMWI	GCNNNNNNNGC	1 cut(s)	893
BstNI	CCWGG	1 cut(s)	1056
BstSCI	CCNGG	1 cut(s)	1054
BstUI	CGCG	2 cut(s)	572, 702
BstV1I	GCAGC	1 cut(s)	733
BstV2I	GAAGAC	1 cut(s)	754
BstX2I	RGATCY	3 cut(s)	21, 38, 631
BstYI	RGATCY	3 cut(s)	21, 38, 631
BsuRI	GGCC	1 cut(s)	367
BtgI	CCRYGG	2 cut(s)	34, 585
BtsCI	GGATG	7 cut(s)	128, 181, 583, 754, 887, 1051, 1192
BtsI	GCAGTG	1 cut(s)	651
BtsIMutI	CAGTG	5 cut(s)	651, 739, 1062, 1140, 1176
BveI	ACCTGC	1 cut(s)	259
Cac8I	GCNNGC	1 cut(s)	1218
CciI	TCATGA	1 cut(s)	1107
Cfr13I	GGNCC	2 cut(s)	365, 1012
CseI	GACGC	1 cut(s)	691
Csp6I	GTAC	5 cut(s)	293, 375, 1060, 1099, 1121
CviAII	CATG	6 cut(s)	189, 586, 652, 1008, 1090, 1108
CviQI	GTAC	5 cut(s)	293, 375, 1060, 1099, 1121
DdeI	CTNAG	5 cut(s)	337, 389, 441, 941, 996
DpnI	GATC	7 cut(s)	23, 40, 127, 349, 476, 633, 975
DpnII	GATC	7 cut(s)	21, 38, 125, 347, 474, 631, 973
DraIII	CACNNNGTG	1 cut(s)	1222
Eam1104I	CTCTTC	1 cut(s)	1130
EarI	CTCTTC	1 cut(s)	1130
EciI	GGCGGA	1 cut(s)	317
Eco130I	CCWWGG	1 cut(s)	585
Eco47I	GGWCC	1 cut(s)	1012
Eco57I	CTGAAG	2 cut(s)	713, 1175
Eco88I	CYCGRG	2 cut(s)	121, 430
EcoO109I	RGGNCCY	1 cut(s)	365
EcoRI	GAATTC	1 cut(s)	69
EcoRII	CCWGG	1 cut(s)	1054
EcoT14I	CCWWGG	1 cut(s)	585
ErhI	CCWWGG	1 cut(s)	585
FaeI	CATG	6 cut(s)	192, 589, 655, 1011, 1093, 1111
FalI	AAGNNNNNCTT	2 cut(s)	1109, 1141
FaqI	GGGAC	1 cut(s)	1025
FatI	CATG	6 cut(s)	188, 585, 651, 1007, 1089, 1107
Fnu4HI	GCNGC	1 cut(s)	722
FokI	GGATG	7 cut(s)	115, 188, 590, 761, 894, 1038, 1179
Fsp4HI	GCNGC	1 cut(s)	722
FspBI	CTAG	2 cut(s)	531, 888
GluI	GCNGC	1 cut(s)	722
HaeIII	GGCC	1 cut(s)	367
HapII	CCGG	1 cut(s)	687
HgaI	GACGC	1 cut(s)	691
Hin1II	CATG	6 cut(s)	192, 589, 655, 1011, 1093, 1111
HincII	GTYRAC	1 cut(s)	427
HindII	GTYRAC	1 cut(s)	427
HindIII	AAGCTT	1 cut(s)	443
HpaI	GTTAAC	1 cut(s)	427
HpaII	CCGG	1 cut(s)	687
Hpy166II	GTNNAC	4 cut(s)	427, 649, 754, 1062
Hpy188I	TCNGA	9 cut(s)	68, 202, 226, 352, 390, 748, 802, 1003, 1282
Hpy8I	GTNNAC	4 cut(s)	427, 649, 754, 1062
HpyAV	CCTTC	4 cut(s)	283, 601, 966, 1056
HpyCH4III	ACNGT	6 cut(s)	297, 379, 406, 734, 1115, 1135
HpyCH4IV	ACGT	1 cut(s)	1236
HpyCH4V	TGCA	8 cut(s)	323, 491, 523, 721, 769, 896, 1180, 1216
HpyF10VI	GCNNNNNNNGC	1 cut(s)	893
HpyF3I	CTNAG	5 cut(s)	337, 389, 441, 941, 996
HpySE526I	ACGT	1 cut(s)	1236
Hsp92II	CATG	6 cut(s)	192, 589, 655, 1011, 1093, 1111
Kpn2I	TCCGGA	1 cut(s)	686
KspAI	GTTAAC	1 cut(s)	427
Kzo9I	GATC	7 cut(s)	21, 38, 125, 347, 474, 631, 973
LmnI	GCTCC	1 cut(s)	36
Lsp1109I	GCAGC	1 cut(s)	733
LweI	GCATC	3 cut(s)	1060, 1189, 1243
MaeI	CTAG	2 cut(s)	531, 888
MaeII	ACGT	1 cut(s)	1236
MaeIII	GTNAC	2 cut(s)	728, 824
MalI	GATC	7 cut(s)	23, 40, 127, 349, 476, 633, 975
MboI	GATC	7 cut(s)	21, 38, 125, 347, 474, 631, 973
MboII	GAAGA	5 cut(s)	158, 731, 754, 1117, 1168
MflI	RGATCY	3 cut(s)	21, 38, 631
MluCI	AATT	6 cut(s)	45, 69, 234, 493, 922, 1186
MlyI	GAGTC	6 cut(s)	216, 394, 428, 791, 818, 1095
MmeI	TCCRAC	7 cut(s)	46, 49, 425, 495, 555, 637, 1239
MnlI	CCTC	6 cut(s)	178, 572, 604, 662, 900, 997
MroI	TCCGGA	1 cut(s)	686
MroXI	GAANNNNTTC	1 cut(s)	110
MseI	TTAA	5 cut(s)	117, 260, 426, 707, 1239
MslI	CAYNNNNRTG	1 cut(s)	1094
MspCI	CTTAAG	1 cut(s)	706
MspI	CCGG	1 cut(s)	687
MspR9I	CCNGG	1 cut(s)	1056
Mva1269I	GAATGC	2 cut(s)	325, 1218
MvaI	CCWGG	1 cut(s)	1056
MvnI	CGCG	2 cut(s)	572, 702
MwoI	GCNNNNNNNGC	1 cut(s)	893
NcoI	CCATGG	1 cut(s)	585
NdeII	GATC	7 cut(s)	21, 38, 125, 347, 474, 631, 973
NlaIII	CATG	6 cut(s)	192, 589, 655, 1011, 1093, 1111
NlaIV	GGNNCC	2 cut(s)	23, 1013
NmuCI	GTSAC	1 cut(s)	824
NspV	TTCGAA	1 cut(s)	158
PagI	TCATGA	1 cut(s)	1107
PctI	GAATGC	2 cut(s)	325, 1218
PdmI	GAANNNNTTC	1 cut(s)	110
PfeI	GAWTC	5 cut(s)	194, 581, 602, 772, 1144
PflFI	GACNNNGTC	1 cut(s)	758
PkrI	GCNGC	1 cut(s)	723
Ple19I	CGATCG	1 cut(s)	976
PleI	GAGTC	6 cut(s)	215, 393, 427, 791, 817, 1094
PpsI	GAGTC	6 cut(s)	215, 393, 427, 791, 817, 1094
Psp6I	CCWGG	1 cut(s)	1054
PspGI	CCWGG	1 cut(s)	1054
PspN4I	GGNNCC	2 cut(s)	23, 1013
PspPI	GGNCC	2 cut(s)	365, 1012
PsuI	RGATCY	3 cut(s)	21, 38, 631
PsyI	GACNNNGTC	1 cut(s)	758
PvuI	CGATCG	1 cut(s)	976
RsaI	GTAC	5 cut(s)	294, 376, 1061, 1100, 1122
RsaNI	GTAC	5 cut(s)	293, 375, 1060, 1099, 1121
RseI	CAYNNNNRTG	1 cut(s)	1094
SaqAI	TTAA	5 cut(s)	117, 260, 426, 707, 1239
SatI	GCNGC	1 cut(s)	722
Sau3AI	GATC	7 cut(s)	21, 38, 125, 347, 474, 631, 973
Sau96I	GGNCC	2 cut(s)	365, 1012
SchI	GAGTC	6 cut(s)	216, 394, 428, 791, 818, 1095
ScrFI	CCNGG	1 cut(s)	1056
SfaNI	GCATC	3 cut(s)	1060, 1189, 1243
SfuI	TTCGAA	1 cut(s)	158
SinI	GGWCC	1 cut(s)	1012
SmiMI	CAYNNNNRTG	1 cut(s)	1094
SmlI	CTYRAG	1 cut(s)	706
SmoI	CTYRAG	1 cut(s)	706
Sse9I	AATT	6 cut(s)	45, 69, 234, 493, 922, 1186
SsiI	CCGC	5 cut(s)	5, 302, 666, 700, 1019
SspMI	CTAG	2 cut(s)	531, 888
StyD4I	CCNGG	1 cut(s)	1054
StyI	CCWWGG	1 cut(s)	585
TaaI	ACNGT	6 cut(s)	297, 379, 406, 734, 1115, 1135
TaiI	ACGT	1 cut(s)	1239
TaqI	TCGA	5 cut(s)	43, 158, 605, 972, 1206
TasI	AATT	6 cut(s)	45, 69, 234, 493, 922, 1186
TfiI	GAWTC	5 cut(s)	194, 581, 602, 772, 1144
Tru1I	TTAA	5 cut(s)	117, 260, 426, 707, 1239
Tru9I	TTAA	5 cut(s)	117, 260, 426, 707, 1239
TscAI	CASTG	5 cut(s)	651, 739, 1069, 1140, 1176
TseFI	GTSAC	1 cut(s)	824
TseI	GCWGC	1 cut(s)	721
Tsp45I	GTSAC	1 cut(s)	824
TspDTI	ATGAA	4 cut(s)	177, 882, 1096, 1124
TspGWI	ACGGA	4 cut(s)	23, 82, 188, 299
TspRI	CASTG	5 cut(s)	651, 739, 1069, 1140, 1176
Tth111I	GACNNNGTC	1 cut(s)	758
Vha464I	CTTAAG	1 cut(s)	706
VpaK11BI	GGWCC	1 cut(s)	1012
XapI	RAATTY	2 cut(s)	69, 493
XcmI	CCANNNNNNNNNTGG	3 cut(s)	32, 879, 1087
XmnI	GAANNNNTTC	1 cut(s)	110
XspI	CTAG	2 cut(s)	531, 888

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.