Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002462

Physical Location & Seq

Genomic Coordinates Reverse (-)

1599839 .. 1600621

Gene Structure 783 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g02600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGTTGGAGGTATGGTTTACTAGCATCAAGAAAGTTGGTATAACCAATTATCTAGTTGTAGGGTTAGATGACGAAATTGAAGAATTTTGCAAAGCTAATGATGTTCCTGTATACAAAAGAGATCCGGATGAGCGTTTTGATTCAATTGGGAAGACGGGAGGTAACCATGCGGTATCTGGGTTGAAATTTCGTATCTTGAGGGAGTTTCTGCAACTAGGTTACAGTGTTCTTCTCTCGGATGTTGATATAGTATATTTGCAGAACCCGTTCAATCATCTCTATCGGGATTCTGATGTAGAGTCCATGACTGATGGTCACAATAACTATACAGCTTATGGATTTAATGATGTGTTTGACGAACCCTCTATGGGGTGGGCTCGATATGCTCACACAATGAGGATATGGGTTTATAACTCTGGTTTCTTTTACCTAAGACCTACGCTTCCTGCAATTGAGCTTTTGGATCGTGTGGCTGAACGACTCTCTAGGCCAGAAAAAGCATGGGACCAAGCAGTATTCAACGAGGAACTATTTTTCCCTTCACATCCAGGATACAATGGACTTCATGCTTCCAAGAGAACAATGGATTTCTATCTCTTTATGAATAGCAAGGTCCTCTTCAAGACGGTCAGGAAAGACGCTAATTTGAAAAAGTTGAAACCAGTAATCCTTCACGTAAATTACCACCCGGATAAACTTCCAAGGATGCAGGCAATTATGGATTTCTATGTTCACGGCAAGCAAGATGCACTGGAACCTTTCCCTGACGGTTCTCAATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016740 GO:0016757 GO:0021700 GO:0022622 GO:0030154 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0071554 GO:0071695 GO:0071840 GO:0080147 GO:0090558 GO:0090627 GO:0097708 GO:0098791 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00514 map00514

Pfam Domains

Protein Families

Nucleotid_trans

Protein Analysis

261

Amino Acids

30.31

Weight (kDa)

5.99

Isoelectric Point (pI)

34.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nucleotid_trans	PF03407	14 - 233	1.5e-49	Nucleotide-diphospho-sugar transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19360 AT1G19360 AT1G75110
fragaria_vesca	FvH4_2g08270 FvH4_2g08270 FvH4_2g08270 FvH4_2g08270 FvH4_2g40081
malus_domestica	MD08G1032600.v1.1 MD10G1080700.v1.1 MD15G1029300.v1.1
prunus_persica	Prupe.1G382100_v2.0.a1 Prupe.8G102000_v2.0.a1
pyrus_communis	pycom05g06040 pycom08g02590 pycom10g06390 pycom15g02600
rosa_chinensis	RchiOBHm_Chr6g0263151 RchiOBHm_Chr6g0300661
rosa_laevigata	RLG00000011313 RLG00000014368
rosa_multiflora	Rmu_co8387041.1_g000001 Rmu_sc0004226.1_g000014 Rmu_sc0014374.1_g000002 Rmu_sc0015149.1_g000002
rosa_roxburghii	Rroxscaffold_176G00430950 Rroxscaffold_7G00167540 Rroxscaffold_7G00204620
rosa_rugosa	Rorug06G0003900 Rorug06G0298200
rosa_samantha	Rh6AG123000 Rh6AG410900 Rh6BG118000 Rh6BG418100 Rh6CG116200 Rh6CG425600 Rh6DG104700 Rh6DG411000
rosa_wichuraiana	Rw0G002190 Rw6G010570 Rw6G035950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	411
AccI	GTMKAC	1 cut(s)	111
AccIII	TCCGGA	1 cut(s)	124
AciI	CCGC	1 cut(s)	170
AclWI	GGATC	2 cut(s)	116, 471
AcsI	RAATTY	2 cut(s)	83, 185
AfiI	CCNNNNNNNGG	2 cut(s)	368, 369
AgsI	TTSAA	8 cut(s)	80, 144, 184, 271, 520, 622, 649, 658
AhdI	GACNNNNNGTC	1 cut(s)	312
AjnI	CCWGG	1 cut(s)	547
AloI	GAACNNNNNNTCC	2 cut(s)	519, 551
AluBI	AGCT	3 cut(s)	95, 332, 457
AluI	AGCT	3 cut(s)	95, 332, 457
AlwI	GGATC	2 cut(s)	116, 471
Aor13HI	TCCGGA	1 cut(s)	124
AoxI	GGCC	1 cut(s)	488
ApoI	RAATTY	2 cut(s)	83, 185
Asp700I	GAANNNNTTC	1 cut(s)	266
AspS9I	GGNCC	2 cut(s)	505, 613
AsuC2I	CCSGG	1 cut(s)	689
AvaII	GGWCC	2 cut(s)	505, 613
BanII	GRGCYC	1 cut(s)	379
BbsI	GAAGAC	1 cut(s)	158
BccI	CCATC	1 cut(s)	305
BceAI	ACGGC	1 cut(s)	751
BciT130I	CCWGG	1 cut(s)	549
BciVI	GTATCC	1 cut(s)	545
BcnI	CCSGG	1 cut(s)	689
BfaI	CTAG	4 cut(s)	21, 53, 215, 486
BfuI	GTATCC	1 cut(s)	545
Bme1390I	CCNGG	2 cut(s)	549, 689
Bme18I	GGWCC	2 cut(s)	505, 613
BmeRI	GACNNNNNGTC	1 cut(s)	312
BmgT120I	GGNCC	2 cut(s)	505, 613
BmiI	GGNNCC	2 cut(s)	506, 756
BmrFI	CCNGG	2 cut(s)	549, 689
BmsI	GCATC	3 cut(s)	33, 696, 736
BpiI	GAAGAC	1 cut(s)	158
BpuEI	CTTGAG	1 cut(s)	217
BpuMI	CCSGG	1 cut(s)	689
BsaAI	YACGTR	1 cut(s)	676
BsaBI	GATNNNNATC	1 cut(s)	591
BsaJI	CCNNGG	1 cut(s)	701
BsaWI	WCCGGW	1 cut(s)	124
BsaXI	ACNNNNNCTCC	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	2 cut(s)	368, 369
Bse1I	ACTGG	2 cut(s)	662, 756
Bse8I	GATNNNNATC	1 cut(s)	591
BseAI	TCCGGA	1 cut(s)	124
BseBI	CCWGG	1 cut(s)	549
BseDI	CCNNGG	1 cut(s)	701
BseGI	GGATG	4 cut(s)	133, 244, 544, 711
BseJI	GATNNNNATC	1 cut(s)	591
BseLI	CCNNNNNNNGG	2 cut(s)	368, 369
BseNI	ACTGG	2 cut(s)	662, 756
BshFI	GGCC	1 cut(s)	490
BsiSI	CCGG	2 cut(s)	125, 689
BslFI	GGGAC	1 cut(s)	518
BslI	CCNNNNNNNGG	2 cut(s)	368, 369
BsmFI	GGGAC	1 cut(s)	518
BsnI	GGCC	1 cut(s)	490
Bsp1286I	GDGCHC	1 cut(s)	379
Bsp13I	TCCGGA	1 cut(s)	124
Bsp143I	GATC	2 cut(s)	121, 463
BspACI	CCGC	1 cut(s)	170
BspANI	GGCC	1 cut(s)	490
BspEI	TCCGGA	1 cut(s)	124
BspLI	GGNNCC	2 cut(s)	506, 756
BspPI	GGATC	2 cut(s)	116, 471
BsrI	ACTGG	2 cut(s)	662, 756
BssECI	CCNNGG	1 cut(s)	701
BssMI	GATC	2 cut(s)	121, 463
BssNAI	GTATAC	1 cut(s)	112
BssT1I	CCWWGG	1 cut(s)	701
Bst1107I	GTATAC	1 cut(s)	112
Bst2UI	CCWGG	1 cut(s)	549
Bst4CI	ACNGT	3 cut(s)	224, 628, 770
Bst6I	CTCTTC	1 cut(s)	623
BstBAI	YACGTR	1 cut(s)	676
BstC8I	GCNNGC	2 cut(s)	711, 740
BstDEI	CTNAG	1 cut(s)	431
BstEII	GGTNACC	1 cut(s)	161
BstF5I	GGATG	4 cut(s)	133, 244, 544, 711
BstKTI	GATC	2 cut(s)	124, 466
BstMBI	GATC	2 cut(s)	121, 463
BstMWI	GCNNNNNNNGC	1 cut(s)	383
BstNI	CCWGG	1 cut(s)	549
BstPI	GGTNACC	1 cut(s)	161
BstSCI	CCNGG	2 cut(s)	547, 687
BstV2I	GAAGAC	1 cut(s)	158
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
BstZ17I	GTATAC	1 cut(s)	112
BsuI	GTATCC	1 cut(s)	545
BsuRI	GGCC	1 cut(s)	490
BtsCI	GGATG	4 cut(s)	133, 244, 544, 711
BtsIMutI	CAGTG	2 cut(s)	229, 749
Cac8I	GCNNGC	2 cut(s)	711, 740
Cfr13I	GGNCC	2 cut(s)	505, 613
CseI	GACGC	1 cut(s)	647
CviAII	CATG	4 cut(s)	167, 304, 501, 566
CviJI	RGCY	6 cut(s)	95, 332, 377, 457, 473, 490
CviKI_1	RGCY	6 cut(s)	95, 332, 377, 457, 473, 490
DdeI	CTNAG	1 cut(s)	431
DpnI	GATC	2 cut(s)	123, 465
DpnII	GATC	2 cut(s)	121, 463
DriI	GACNNNNNGTC	1 cut(s)	312
Eam1104I	CTCTTC	1 cut(s)	623
Eam1105I	GACNNNNNGTC	1 cut(s)	312
EarI	CTCTTC	1 cut(s)	623
Eco130I	CCWWGG	1 cut(s)	701
Eco24I	GRGCYC	1 cut(s)	379
Eco47I	GGWCC	2 cut(s)	505, 613
Eco91I	GGTNACC	1 cut(s)	161
EcoO109I	RGGNCCY	1 cut(s)	613
EcoO65I	GGTNACC	1 cut(s)	161
EcoRII	CCWGG	1 cut(s)	547
EcoT14I	CCWWGG	1 cut(s)	701
EcoT38I	GRGCYC	1 cut(s)	379
ErhI	CCWWGG	1 cut(s)	701
FaeI	CATG	4 cut(s)	170, 307, 504, 569
FalI	AAGNNNNNCTT	2 cut(s)	602, 634
FaqI	GGGAC	1 cut(s)	518
FatI	CATG	4 cut(s)	166, 303, 500, 565
FblI	GTMKAC	1 cut(s)	111
FokI	GGATG	4 cut(s)	140, 251, 531, 718
FriOI	GRGCYC	1 cut(s)	379
FspBI	CTAG	4 cut(s)	21, 53, 215, 486
HaeIII	GGCC	1 cut(s)	490
HapII	CCGG	2 cut(s)	125, 689
HgaI	GACGC	1 cut(s)	647
Hin1II	CATG	4 cut(s)	170, 307, 504, 569
HinfI	GANTC	4 cut(s)	140, 287, 299, 480
HpaII	CCGG	2 cut(s)	125, 689
Hpy166II	GTNNAC	3 cut(s)	18, 112, 733
Hpy188I	TCNGA	2 cut(s)	238, 292
Hpy188III	TCNNGA	6 cut(s)	28, 125, 196, 284, 622, 631
Hpy8I	GTNNAC	3 cut(s)	18, 112, 733
HpyAV	CCTTC	2 cut(s)	549, 680
HpyCH4III	ACNGT	3 cut(s)	224, 628, 770
HpyCH4IV	ACGT	1 cut(s)	675
HpyCH4V	TGCA	6 cut(s)	90, 211, 259, 449, 709, 749
HpyF10VI	GCNNNNNNNGC	1 cut(s)	383
HpyF3I	CTNAG	1 cut(s)	431
HpySE526I	ACGT	1 cut(s)	675
Hsp92II	CATG	4 cut(s)	170, 307, 504, 569
Kpn2I	TCCGGA	1 cut(s)	124
Kzo9I	GATC	2 cut(s)	121, 463
LweI	GCATC	3 cut(s)	33, 696, 736
MaeI	CTAG	4 cut(s)	21, 53, 215, 486
MaeII	ACGT	1 cut(s)	675
MaeIII	GTNAC	3 cut(s)	161, 218, 314
MalI	GATC	2 cut(s)	123, 465
MboI	GATC	2 cut(s)	121, 463
MboII	GAAGA	4 cut(s)	92, 163, 221, 610
MfeI	CAATTG	2 cut(s)	144, 450
MflI	RGATCY	1 cut(s)	121
MhlI	GDGCHC	1 cut(s)	379
MluCI	AATT	9 cut(s)	46, 75, 83, 144, 185, 450, 643, 679, 714
MlyI	GAGTC	2 cut(s)	308, 474
MnlI	CCTC	6 cut(s)	152, 192, 373, 390, 517, 626
MroI	TCCGGA	1 cut(s)	124
MroXI	GAANNNNTTC	1 cut(s)	266
MseI	TTAA	1 cut(s)	342
MspI	CCGG	2 cut(s)	125, 689
MspR9I	CCNGG	2 cut(s)	549, 689
MunI	CAATTG	2 cut(s)	144, 450
MvaI	CCWGG	1 cut(s)	549
MwoI	GCNNNNNNNGC	1 cut(s)	383
NciI	CCSGG	1 cut(s)	689
NdeII	GATC	2 cut(s)	121, 463
NlaIII	CATG	4 cut(s)	170, 307, 504, 569
NlaIV	GGNNCC	2 cut(s)	506, 756
NmuCI	GTSAC	1 cut(s)	314
PdmI	GAANNNNTTC	1 cut(s)	266
PfeI	GAWTC	2 cut(s)	140, 287
PfoI	TCCNGGA	1 cut(s)	547
PleI	GAGTC	2 cut(s)	307, 474
PpsI	GAGTC	2 cut(s)	307, 474
Ppu21I	YACGTR	1 cut(s)	676
PpuMI	RGGWCCY	1 cut(s)	613
PsiI	TTATAA	1 cut(s)	411
Psp5II	RGGWCCY	1 cut(s)	613
Psp6I	CCWGG	1 cut(s)	547
PspEI	GGTNACC	1 cut(s)	161
PspGI	CCWGG	1 cut(s)	547
PspN4I	GGNNCC	2 cut(s)	506, 756
PspPI	GGNCC	2 cut(s)	505, 613
PspPPI	RGGWCCY	1 cut(s)	613
PsuI	RGATCY	1 cut(s)	121
SaqAI	TTAA	1 cut(s)	342
Sau3AI	GATC	2 cut(s)	121, 463
Sau96I	GGNCC	2 cut(s)	505, 613
SchI	GAGTC	2 cut(s)	308, 474
ScrFI	CCNGG	2 cut(s)	549, 689
SduI	GDGCHC	1 cut(s)	379
SfaNI	GCATC	3 cut(s)	33, 696, 736
SinI	GGWCC	2 cut(s)	505, 613
SmlI	CTYRAG	1 cut(s)	196
SmoI	CTYRAG	1 cut(s)	196
Sse9I	AATT	9 cut(s)	46, 75, 83, 144, 185, 450, 643, 679, 714
SsiI	CCGC	1 cut(s)	170
SspMI	CTAG	4 cut(s)	21, 53, 215, 486
StyD4I	CCNGG	2 cut(s)	547, 687
StyI	CCWWGG	1 cut(s)	701
TaaI	ACNGT	3 cut(s)	224, 628, 770
TaiI	ACGT	1 cut(s)	678
TaqI	TCGA	1 cut(s)	379
TasI	AATT	9 cut(s)	46, 75, 83, 144, 185, 450, 643, 679, 714
TfiI	GAWTC	2 cut(s)	140, 287
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TscAI	CASTG	2 cut(s)	229, 756
TseFI	GTSAC	1 cut(s)	314
Tsp45I	GTSAC	1 cut(s)	314
TspDTI	ATGAA	2 cut(s)	554, 617
TspRI	CASTG	2 cut(s)	229, 756
VpaK11BI	GGWCC	2 cut(s)	505, 613
XapI	RAATTY	2 cut(s)	83, 185
XcmI	CCANNNNNNNNNTGG	3 cut(s)	173, 498, 580
XmiI	GTMKAC	1 cut(s)	111
XmnI	GAANNNNTTC	1 cut(s)	266
XspI	CTAG	4 cut(s)	21, 53, 215, 486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.