Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0002462

Physical Location & Seq

Genomic Coordinates Forward (+)

7784212 .. 7786089

Gene Structure 1878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g06040.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

ATGGCGGTGGTGGGTCGCAGGGAGAAAGCGCAGTCTCTCTGCAAATCGAGGGTCGTCGTCGCTATAACAATCGGAATCCTCCTGGGCTGCGTCTTCGCCCTCTGCTTCCCCAGCGGCTTTCTTTCCATTTCCAATCCTGCCCCCATTCTCAATCGCCGCTTCGCCAAATCCATCGCCCAGGTTGGTTCTTCCTTGTGTGAATCATCTGAACGGATCAACCTGTTGAAATCACAGTTTGTGGCCGCATCTGAGAAAAATGCCGAGTTGAAAAAGCTGGTTAGGGAATTGACTGAAAAGATTCGGTTGGCTGAACAAAGGAAAGATCAGGCAGAGAAACAGGTTCTTGTGTTGGGTGATCAGAAGAAAGCTGGTCCTTTTGGTACCGTCAAAGGCTTACTAACCAACCCCAGTGTTCTTCCAGATGAATCTGTGAATCCAAGATTGGCAAAGATTTTGGAGAAAGTTGCTGTTAATAGAGAACTTATAGTTGCTCTTGCAAACTCGAATGTGAAGGAAATGTTGGAGGTATGGTTCGCTAACATCAATAGGGTGGGCATATCCAATTATCTGGTTGTTGCTTTGGATGATGAAATTGCCAGATTCTGCGAATTGAAAAATGTTCCAGTTTATAAGAGAGACCCAAACAAAGTAATTGATTCGGTTGCAAGGACCGGAGGGAACCATGCTGTCTCTGGGCTAAAATTTCGTGTTCTGAGGGAGTTTTTGCAGCTCGGTTATAGTGTTCTTCTGTCAGATGTCGATATTGTGTACTTGCAAAACCCCTTTAATTATCTATATCGTGATTCAGATGTAGAGTCCATGACTGATGGTCACAACAATATGACTGCTTATGGTTACAATGACGTCTTTGATGAGCCAGGAATGGGTTGGGCTCGATATGCTCATACAATGCGTATATGGGTGTATAACTCTGGTTTCTTCTACATTCGACCGACAATTCCTTCAATTGAGTTATTCGATCGTGTGGCCAATCGACTCTCAAAGGAGCAGGCTTGGGACCAGGCAGTGTTCAACGAGGAACTCTTTTTCCCTTCTCATCCTGGGTATGATGGACTTCATGCTTCCAGGAGAACTATGGATTTCTATCTCTTTATGAATAGCAAGGTCCTCTTCAAGACCGTGAGGAAAGATGCTAAACTGAGCAAGTTGAAGCCGGTTATTGTTCACGTTAATTACCATCCTGATAAGTATCCTAGAATGTTAGCAATTATGGATTTTTATGTCAATGGGAAGCAGGATGCACTGAAACCTTTCCCTGATGGTTCAGAGTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00514 map00514

Pfam Domains

Protein Families

Nucleotid_trans

Protein Analysis

432

Amino Acids

48.82

Weight (kDa)

9.17

Isoelectric Point (pI)

32.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19360 AT1G19360 AT1G75110
fragaria_vesca	FvH4_2g08270 FvH4_2g08270 FvH4_2g08270 FvH4_2g08270 FvH4_2g40081
malus_domestica	MD08G1032600.v1.1 MD10G1080700.v1.1 MD15G1029300.v1.1
prunus_persica	Prupe.1G382100_v2.0.a1 Prupe.8G102000_v2.0.a1
pyrus_communis	pycom05g06040 pycom08g02590 pycom10g06390 pycom15g02600
rosa_chinensis	RchiOBHm_Chr6g0263151 RchiOBHm_Chr6g0300661
rosa_laevigata	RLG00000011313 RLG00000014368
rosa_multiflora	Rmu_co8387041.1_g000001 Rmu_sc0004226.1_g000014 Rmu_sc0014374.1_g000002 Rmu_sc0015149.1_g000002
rosa_roxburghii	Rroxscaffold_176G00430950 Rroxscaffold_7G00167540 Rroxscaffold_7G00204620
rosa_rugosa	Rorug06G0003900 Rorug06G0298200
rosa_samantha	Rh6AG123000 Rh6AG410900 Rh6BG118000 Rh6BG418100 Rh6CG116200 Rh6CG425600 Rh6DG104700 Rh6DG411000
rosa_wichuraiana	Rw0G002190 Rw6G010570 Rw6G035950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	630
AatII	GACGTC	1 cut(s)	867
Acc65I	GGTACC	1 cut(s)	380
AccB1I	GGYRCC	1 cut(s)	380
AciI	CCGC	4 cut(s)	5, 114, 157, 243
AclWI	GGATC	1 cut(s)	221
AcoI	YGGCCR	2 cut(s)	240, 987
AcsI	RAATTY	1 cut(s)	701
AcyI	GRCGYC	1 cut(s)	864
AfaI	GTAC	2 cut(s)	382, 770
AfiI	CCNNNNNNNGG	1 cut(s)	884
AgsI	TTSAA	7 cut(s)	226, 268, 613, 966, 1033, 1135, 1171
AhdI	GACNNNNNGTC	1 cut(s)	828
AjnI	CCWGG	6 cut(s)	81, 177, 877, 1020, 1060, 1085
AjuI	GAANNNNNNNTTGG	4 cut(s)	425, 457, 503, 535
AloI	GAACNNNNNNTCC	4 cut(s)	515, 547, 1032, 1064
AluBI	AGCT	3 cut(s)	274, 368, 730
AluI	AGCT	3 cut(s)	274, 368, 730
Alw26I	GTCTC	3 cut(s)	39, 630, 694
AlwI	GGATC	1 cut(s)	221
AlwNI	CAGNNNCTG	1 cut(s)	603
AoxI	GGCC	2 cut(s)	240, 987
ApeKI	GCWGC	2 cut(s)	87, 727
ApoI	RAATTY	1 cut(s)	701
ArsI	GACNNNNNNTTYG	2 cut(s)	36, 68
Asp700I	GAANNNNTTC	2 cut(s)	297, 1271
Asp718I	GGTACC	1 cut(s)	380
AspLEI	GCGC	1 cut(s)	31
AspS9I	GGNCC	4 cut(s)	371, 669, 1018, 1126
AsuHPI	GGTGA	1 cut(s)	365
AvaII	GGWCC	4 cut(s)	371, 669, 1018, 1126
BalI	TGGCCA	1 cut(s)	989
BanI	GGYRCC	1 cut(s)	380
BanII	GRGCYC	1 cut(s)	895
BbsI	GAAGAC	1 cut(s)	85
BbvI	GCAGC	2 cut(s)	74, 739
BccI	CCATC	5 cut(s)	179, 821, 1064, 1206, 1274
BciT130I	CCWGG	6 cut(s)	83, 179, 879, 1022, 1062, 1087
BciVI	GTATCC	1 cut(s)	1221
BclI	TGATCA	1 cut(s)	355
BcoDI	GTCTC	3 cut(s)	39, 630, 694
BfaI	CTAG	1 cut(s)	1215
BfuI	GTATCC	1 cut(s)	1221
BisI	GCNGC	5 cut(s)	88, 115, 157, 243, 728
BlsI	GCNGC	5 cut(s)	89, 116, 158, 244, 729
Bme1390I	CCNGG	6 cut(s)	83, 179, 879, 1022, 1062, 1087
Bme18I	GGWCC	4 cut(s)	371, 669, 1018, 1126
BmeRI	GACNNNNNGTC	1 cut(s)	828
BmgT120I	GGNCC	4 cut(s)	371, 669, 1018, 1126
BmiI	GGNNCC	3 cut(s)	382, 680, 1019
BmrFI	CCNGG	6 cut(s)	83, 179, 879, 1022, 1062, 1087
BmrI	ACTGGG	1 cut(s)	402
BmsI	GCATC	3 cut(s)	254, 1141, 1249
BmuI	ACTGGG	1 cut(s)	402
BpiI	GAAGAC	1 cut(s)	85
BsaBI	GATNNNNATC	2 cut(s)	1104, 1209
BsaHI	GRCGYC	1 cut(s)	864
BsaI	GGTCTC	1 cut(s)	630
BsaJI	CCNNGG	3 cut(s)	82, 177, 1061
BsaWI	WCCGGW	1 cut(s)	671
BsaXI	ACNNNNNCTCC	2 cut(s)	515, 545
Bsc4I	CCNNNNNNNGG	1 cut(s)	884
Bse118I	RCCGGY	1 cut(s)	1174
Bse1I	ACTGG	2 cut(s)	408, 623
Bse8I	GATNNNNATC	2 cut(s)	1104, 1209
BseBI	CCWGG	6 cut(s)	83, 179, 879, 1022, 1062, 1087
BseDI	CCNNGG	3 cut(s)	82, 177, 1061
BseGI	GGATG	4 cut(s)	589, 1057, 1198, 1264
BseJI	GATNNNNATC	2 cut(s)	1104, 1209
BseLI	CCNNNNNNNGG	1 cut(s)	884
BseMII	CTCAG	3 cut(s)	240, 704, 1151
BseNI	ACTGG	2 cut(s)	408, 623
BseXI	GCAGC	2 cut(s)	74, 739
BseYI	CCCAGC	1 cut(s)	110
Bsh1285I	CGRYCG	2 cut(s)	953, 982
BshFI	GGCC	2 cut(s)	242, 989
BshNI	GGYRCC	1 cut(s)	380
BsiEI	CGRYCG	2 cut(s)	953, 982
BsiSI	CCGG	2 cut(s)	672, 1175
BslFI	GGGAC	1 cut(s)	1031
BslI	CCNNNNNNNGG	1 cut(s)	884
BsmAI	GTCTC	3 cut(s)	39, 630, 694
BsmFI	GGGAC	1 cut(s)	1031
BsnI	GGCC	2 cut(s)	242, 989
Bso31I	GGTCTC	1 cut(s)	630
Bsp1286I	GDGCHC	1 cut(s)	895
Bsp143I	GATC	4 cut(s)	213, 322, 355, 979
BspACI	CCGC	4 cut(s)	5, 114, 157, 243
BspANI	GGCC	2 cut(s)	242, 989
BspCNI	CTCAG	3 cut(s)	241, 705, 1152
BspLI	GGNNCC	3 cut(s)	382, 680, 1019
BspPI	GGATC	1 cut(s)	221
BspT107I	GGYRCC	1 cut(s)	380
BspTNI	GGTCTC	1 cut(s)	630
BsrFI	RCCGGY	1 cut(s)	1174
BsrI	ACTGG	2 cut(s)	408, 623
BssAI	RCCGGY	1 cut(s)	1174
BssECI	CCNNGG	3 cut(s)	82, 177, 1061
BssMI	GATC	4 cut(s)	213, 322, 355, 979
BssNI	GRCGYC	1 cut(s)	864
Bst2UI	CCWGG	6 cut(s)	83, 179, 879, 1022, 1062, 1087
Bst4CI	ACNGT	3 cut(s)	234, 385, 1141
Bst6I	CTCTTC	1 cut(s)	1136
BstACI	GRCGYC	1 cut(s)	864
BstC8I	GCNNGC	1 cut(s)	1011
BstDEI	CTNAG	3 cut(s)	249, 713, 1160
BstF5I	GGATG	4 cut(s)	589, 1057, 1198, 1264
BstHHI	GCGC	1 cut(s)	31
BstKTI	GATC	4 cut(s)	216, 325, 358, 982
BstMAI	GTCTC	3 cut(s)	39, 630, 694
BstMBI	GATC	4 cut(s)	213, 322, 355, 979
BstMCI	CGRYCG	2 cut(s)	953, 982
BstMWI	GCNNNNNNNGC	2 cut(s)	111, 899
BstNI	CCWGG	6 cut(s)	83, 179, 879, 1022, 1062, 1087
BstSCI	CCNGG	6 cut(s)	81, 177, 877, 1020, 1060, 1085
BstV1I	GCAGC	2 cut(s)	74, 739
BstV2I	GAAGAC	1 cut(s)	85
BstXI	CCANNNNNNTGG	1 cut(s)	568
BsuI	GTATCC	1 cut(s)	1221
BsuRI	GGCC	2 cut(s)	242, 989
BtgZI	GCGATG	1 cut(s)	157
BtsCI	GGATG	4 cut(s)	589, 1057, 1198, 1264
BtsI	GCAGTG	1 cut(s)	1032
BtsIMutI	CAGTG	3 cut(s)	415, 1032, 1262
Cac8I	GCNNGC	1 cut(s)	1011
CaiI	CAGNNNCTG	1 cut(s)	603
CfoI	GCGC	1 cut(s)	31
Cfr10I	RCCGGY	1 cut(s)	1174
Cfr13I	GGNCC	4 cut(s)	371, 669, 1018, 1126
CseI	GACGC	1 cut(s)	79
Csp6I	GTAC	2 cut(s)	381, 769
CviAII	CATG	3 cut(s)	683, 820, 1079
CviQI	GTAC	2 cut(s)	381, 769
DdeI	CTNAG	3 cut(s)	249, 713, 1160
DpnI	GATC	4 cut(s)	215, 324, 357, 981
DpnII	GATC	4 cut(s)	213, 322, 355, 979
DriI	GACNNNNNGTC	1 cut(s)	828
EaeI	YGGCCR	2 cut(s)	240, 987
Eam1104I	CTCTTC	1 cut(s)	1136
Eam1105I	GACNNNNNGTC	1 cut(s)	828
EarI	CTCTTC	1 cut(s)	1136
Eco24I	GRGCYC	1 cut(s)	895
Eco31I	GGTCTC	1 cut(s)	630
Eco47I	GGWCC	4 cut(s)	371, 669, 1018, 1126
EcoO109I	RGGNCCY	1 cut(s)	1126
EcoRII	CCWGG	6 cut(s)	81, 177, 877, 1020, 1060, 1085
EcoT38I	GRGCYC	1 cut(s)	895
FaeI	CATG	3 cut(s)	686, 823, 1082
FalI	AAGNNNNNCTT	2 cut(s)	1115, 1147
FaqI	GGGAC	1 cut(s)	1031
FatI	CATG	3 cut(s)	682, 819, 1078
FbaI	TGATCA	1 cut(s)	355
Fnu4HI	GCNGC	5 cut(s)	88, 115, 157, 243, 728
FokI	GGATG	4 cut(s)	596, 1044, 1185, 1271
FriOI	GRGCYC	1 cut(s)	895
Fsp4HI	GCNGC	5 cut(s)	88, 115, 157, 243, 728
FspBI	CTAG	1 cut(s)	1215
GlaI	GCGC	1 cut(s)	30
GluI	GCNGC	5 cut(s)	88, 115, 157, 243, 728
GsaI	CCCAGC	1 cut(s)	114
HaeIII	GGCC	2 cut(s)	242, 989
HapII	CCGG	2 cut(s)	672, 1175
HgaI	GACGC	1 cut(s)	79
HhaI	GCGC	1 cut(s)	31
Hin1I	GRCGYC	1 cut(s)	864
Hin1II	CATG	3 cut(s)	686, 823, 1082
Hin6I	GCGC	1 cut(s)	29
HinP1I	GCGC	1 cut(s)	29
HpaII	CCGG	2 cut(s)	672, 1175
HphI	GGTGA	1 cut(s)	365
Hpy166II	GTNNAC	2 cut(s)	769, 1186
Hpy188I	TCNGA	8 cut(s)	74, 208, 250, 360, 714, 754, 808, 1288
Hpy188III	TCNNGA	4 cut(s)	419, 800, 1135, 1202
Hpy8I	GTNNAC	2 cut(s)	769, 1186
Hpy99I	CGWCG	2 cut(s)	59, 62
HpyAV	CCTTC	3 cut(s)	505, 972, 1062
HpyCH4III	ACNGT	3 cut(s)	234, 385, 1141
HpyCH4IV	ACGT	2 cut(s)	864, 1188
HpyCH4V	TGCA	6 cut(s)	42, 497, 665, 727, 775, 1262
HpyF10VI	GCNNNNNNNGC	2 cut(s)	111, 899
HpyF3I	CTNAG	3 cut(s)	249, 713, 1160
HpySE526I	ACGT	2 cut(s)	864, 1188
Hsp92I	GRCGYC	1 cut(s)	864
Hsp92II	CATG	3 cut(s)	686, 823, 1082
HspAI	GCGC	1 cut(s)	29
KpnI	GGTACC	1 cut(s)	384
Ksp22I	TGATCA	1 cut(s)	355
Kzo9I	GATC	4 cut(s)	213, 322, 355, 979
LmnI	GCTCC	1 cut(s)	1006
Lsp1109I	GCAGC	2 cut(s)	74, 739
LweI	GCATC	3 cut(s)	254, 1141, 1249
MaeI	CTAG	1 cut(s)	1215
MaeII	ACGT	2 cut(s)	864, 1188
MaeIII	GTNAC	2 cut(s)	830, 854
MalI	GATC	4 cut(s)	215, 324, 357, 981
MboI	GATC	4 cut(s)	213, 322, 355, 979
MboII	GAAGA	7 cut(s)	85, 180, 373, 407, 737, 931, 1123
MfeI	CAATTG	1 cut(s)	966
MhlI	GDGCHC	1 cut(s)	895
MlsI	TGGCCA	1 cut(s)	989
MluNI	TGGCCA	1 cut(s)	989
MlyI	GAGTC	2 cut(s)	824, 990
MmeI	TCCRAC	1 cut(s)	501
MnlI	CCTC	9 cut(s)	42, 89, 110, 517, 668, 708, 1030, 1137, 1139
Mox20I	TGGCCA	1 cut(s)	989
MroXI	GAANNNNTTC	2 cut(s)	297, 1271
MscI	TGGCCA	1 cut(s)	989
MseI	TTAA	3 cut(s)	471, 786, 1191
Msp20I	TGGCCA	1 cut(s)	989
MspA1I	CMGCKG	1 cut(s)	114
MspI	CCGG	2 cut(s)	672, 1175
MspR9I	CCNGG	6 cut(s)	83, 179, 879, 1022, 1062, 1087
MunI	CAATTG	1 cut(s)	966
MvaI	CCWGG	6 cut(s)	83, 179, 879, 1022, 1062, 1087
MwoI	GCNNNNNNNGC	2 cut(s)	111, 899
NdeII	GATC	4 cut(s)	213, 322, 355, 979
NlaIII	CATG	3 cut(s)	686, 823, 1082
NlaIV	GGNNCC	3 cut(s)	382, 680, 1019
NmeAIII	GCCGAG	1 cut(s)	286
NmuCI	GTSAC	1 cut(s)	830
PdmI	GAANNNNTTC	2 cut(s)	297, 1271
PfeI	GAWTC	8 cut(s)	75, 200, 298, 425, 433, 600, 656, 803
PfoI	TCCNGGA	1 cut(s)	1085
PkrI	GCNGC	5 cut(s)	89, 116, 158, 244, 729
Ple19I	CGATCG	1 cut(s)	982
PleI	GAGTC	2 cut(s)	823, 990
PpsI	GAGTC	2 cut(s)	823, 990
PpuMI	RGGWCCY	1 cut(s)	1126
PsiI	TTATAA	1 cut(s)	630
Psp5II	RGGWCCY	1 cut(s)	1126
Psp6I	CCWGG	6 cut(s)	81, 177, 877, 1020, 1060, 1085
PspFI	CCCAGC	1 cut(s)	110
PspGI	CCWGG	6 cut(s)	81, 177, 877, 1020, 1060, 1085
PspN4I	GGNNCC	3 cut(s)	382, 680, 1019
PspPI	GGNCC	4 cut(s)	371, 669, 1018, 1126
PspPPI	RGGWCCY	1 cut(s)	1126
PstNI	CAGNNNCTG	1 cut(s)	603
PvuI	CGATCG	1 cut(s)	982
RsaI	GTAC	2 cut(s)	382, 770
RsaNI	GTAC	2 cut(s)	381, 769
SaqAI	TTAA	3 cut(s)	471, 786, 1191
SatI	GCNGC	5 cut(s)	88, 115, 157, 243, 728
Sau3AI	GATC	4 cut(s)	213, 322, 355, 979
Sau96I	GGNCC	4 cut(s)	371, 669, 1018, 1126
SchI	GAGTC	2 cut(s)	824, 990
ScrFI	CCNGG	6 cut(s)	83, 179, 879, 1022, 1062, 1087
SduI	GDGCHC	1 cut(s)	895
SfaNI	GCATC	3 cut(s)	254, 1141, 1249
SinI	GGWCC	4 cut(s)	371, 669, 1018, 1126
SsiI	CCGC	4 cut(s)	5, 114, 157, 243
SspMI	CTAG	1 cut(s)	1215
StyD4I	CCNGG	6 cut(s)	81, 177, 877, 1020, 1060, 1085
TaaI	ACNGT	3 cut(s)	234, 385, 1141
TaiI	ACGT	2 cut(s)	867, 1191
TaqI	TCGA	7 cut(s)	47, 503, 759, 895, 949, 978, 994
TaqII	GACCGA	1 cut(s)	967
TatI	WGTACW	1 cut(s)	768
TauI	GCSGC	3 cut(s)	117, 159, 245
TfiI	GAWTC	8 cut(s)	75, 200, 298, 425, 433, 600, 656, 803
Tru1I	TTAA	3 cut(s)	471, 786, 1191
Tru9I	TTAA	3 cut(s)	471, 786, 1191
TscAI	CASTG	3 cut(s)	415, 1032, 1269
TseFI	GTSAC	1 cut(s)	830
TseI	GCWGC	2 cut(s)	87, 727
Tsp45I	GTSAC	1 cut(s)	830
TspDTI	ATGAA	4 cut(s)	438, 603, 1067, 1130
TspGWI	ACGGA	1 cut(s)	226
TspRI	CASTG	3 cut(s)	415, 1032, 1269
VpaK11BI	GGWCC	4 cut(s)	371, 669, 1018, 1126
XapI	RAATTY	1 cut(s)	701
XcmI	CCANNNNNNNNNTGG	3 cut(s)	689, 885, 1093
XmnI	GAANNNNTTC	2 cut(s)	297, 1271
XspI	CTAG	1 cut(s)	1215
ZraI	GACGTC	1 cut(s)	865

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.