Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002462

Physical Location & Seq

Genomic Coordinates Forward (+)

34383389 .. 34385937

Gene Structure 2549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G382100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGGCGGGTCGTAGAGACGGGTCGTTGATGCGAGATAAGACCCAGTCATTTCGTGGATCTCGAATAGTGACAGCCATTGTCGTCGGAGTCCTTCTTGGCTCTGTCTGCGCTTTCTTCTTTCCGCGCGGATTCTTCAGCTCGGATCCGCCTATCGAAAGCCGTCGATTCGGGAAATTGGATCTCCAGACTAGCTCATCCCAATGTGAATCAACAGAACGGATAAACAAGCTGAGGTCTGACATTGGATCACTGTCGGACAAGAATGATGAGCTGAAGAAACAGGTTCAAGATCTAACTGAAAAGCTACGGCTAGCTGAACAAGGAAAGGATCACGCACATGAGCAGTTTTCAGTATTAGGTAAACCGCATAAGGCTGGCCCTCTTGGTACTGTCAAGGGCTTGAGAACTAACCCGACTGTCATTCCCGATGAATCTGTGAATCCGAGGTTGGCAAAGATCTTGGAGGACGTTGCAGTTCAGAAAGAGCTTATAGTTGCACTTGCAAATTCAAATGTGAAAGCCATGTTGGAGGTATGGTTTACTAGCATCAAGAGGGTTGGTATAACCAATTATCTAGTTGTAGGATTAGACGACGAGATTGAAGAATTTTGCATAGCTAATGATGTTCCTGTATACAAGAGAGATCCAGATGAGGGTATTGATTCGATTGCAAAGACAGGAGGTAACCATGCCGTCTCTGGGTTGAAATTTCGTATCTTGAGGGAGTTTCTGCAACTAGGTTACAGTGTTCTTCTCTCAGATGTTGATATAGTATATTTGCAGAACCCCTTCAATCATCTTTATCGGGATTCTGATGTAGAGTCTATGAGTGATGGTCACAATAACATGACTGCTTATGGATTTAATGATGTGTTTGATGAACCTTCTATGGGTTGGGCTCGCTATGCTCATACAATGAGGATATGGGTATATAACTCTGGTTTCTTTTACATAAGACCTACACTTCCTTCAATTGAGCTTTTGGATCGTGTGGCTGGACGGCTCTCTAAGGAAAAAGCATGGGACCAAGCAGTGTTCAATGAGGAACTCTTTTTCCCTTCACATCCGGGGTACGATGGGCTTCATGCTTCCAAGAGAACTATGGATTTCTATCTCTTTATGAACAGCAAGGTCCTCTTCAAGACAGTCAGGAAAGATGCTAATTTGAAAAAATTGAAACCAGTAATCCTTCATGTAAATTACCACCCAGATAAACTTCCAAGGATGAAGGCAATTATGGAGTTCTATGTTAACGGCAAGCAAGATGCACTAGAACCTTTCCCTGAGGGTTCTCAATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016740 GO:0016757 GO:0021700 GO:0022622 GO:0030154 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0071554 GO:0071695 GO:0071840 GO:0080147 GO:0090558 GO:0090627 GO:0097708 GO:0098791 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00514 map00514

Pfam Domains

Protein Families

Nucleotid_trans

Protein Analysis

434

Amino Acids

49.05

Weight (kDa)

7.18

Isoelectric Point (pI)

37.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19360 AT1G19360 AT1G75110
fragaria_vesca	FvH4_2g08270 FvH4_2g08270 FvH4_2g08270 FvH4_2g08270 FvH4_2g40081
malus_domestica	MD08G1032600.v1.1 MD10G1080700.v1.1 MD15G1029300.v1.1
prunus_persica	Prupe.1G382100_v2.0.a1 Prupe.8G102000_v2.0.a1
pyrus_communis	pycom05g06040 pycom08g02590 pycom10g06390 pycom15g02600
rosa_chinensis	RchiOBHm_Chr6g0263151 RchiOBHm_Chr6g0300661
rosa_laevigata	RLG00000011313 RLG00000014368
rosa_multiflora	Rmu_co8387041.1_g000001 Rmu_sc0004226.1_g000014 Rmu_sc0014374.1_g000002 Rmu_sc0015149.1_g000002
rosa_roxburghii	Rroxscaffold_176G00430950 Rroxscaffold_7G00167540 Rroxscaffold_7G00204620
rosa_rugosa	Rorug06G0003900 Rorug06G0298200
rosa_samantha	Rh6AG123000 Rh6AG410900 Rh6BG118000 Rh6BG418100 Rh6CG116200 Rh6CG425600 Rh6DG104700 Rh6DG411000
rosa_wichuraiana	Rw0G002190 Rw6G010570 Rw6G035950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	633
AccII	CGCG	2 cut(s)	124, 126
AciI	CCGC	5 cut(s)	5, 122, 126, 146, 365
AclWI	GGATC	8 cut(s)	64, 137, 150, 186, 253, 336, 638, 993
AcsI	RAATTY	3 cut(s)	505, 605, 707
AcuI	CTGAAG	2 cut(s)	118, 293
AfaI	GTAC	2 cut(s)	388, 1073
AfiI	CCNNNNNNNGG	3 cut(s)	653, 699, 890
AjuI	GAANNNNNNNTTGG	4 cut(s)	431, 463, 509, 541
AloI	GAACNNNNNNTCC	2 cut(s)	1038, 1070
AluBI	AGCT	9 cut(s)	138, 192, 229, 271, 304, 314, 487, 617, 979
AluI	AGCT	9 cut(s)	138, 192, 229, 271, 304, 314, 487, 617, 979
Alw26I	GTCTC	2 cut(s)	9, 700
AlwI	GGATC	8 cut(s)	64, 137, 150, 186, 253, 336, 638, 993
AoxI	GGCC	1 cut(s)	376
ApoI	RAATTY	3 cut(s)	505, 605, 707
Asp700I	GAANNNNTTC	1 cut(s)	788
AspLEI	GCGC	2 cut(s)	110, 126
AspS9I	GGNCC	3 cut(s)	377, 1024, 1132
AsuC2I	CCSGG	1 cut(s)	1068
AsuNHI	GCTAGC	1 cut(s)	310
AvaII	GGWCC	2 cut(s)	1024, 1132
AxyI	CCTNAGG	1 cut(s)	1284
BamHI	GGATCC	1 cut(s)	142
BanII	GRGCYC	1 cut(s)	901
BbvCI	CCTCAGC	1 cut(s)	230
BccI	CCATC	2 cut(s)	827, 1070
BceAI	ACGGC	5 cut(s)	144, 323, 677, 1016, 1270
BcnI	CCSGG	1 cut(s)	1068
BcoDI	GTCTC	2 cut(s)	9, 700
BfaI	CTAG	6 cut(s)	189, 311, 543, 575, 737, 1271
BglII	AGATCT	2 cut(s)	289, 456
Bme1390I	CCNGG	1 cut(s)	1068
Bme18I	GGWCC	2 cut(s)	1024, 1132
BmgT120I	GGNCC	3 cut(s)	377, 1024, 1132
BmiI	GGNNCC	2 cut(s)	144, 1025
BmrFI	CCNGG	1 cut(s)	1068
BmrI	ACTGGG	1 cut(s)	37
BmsI	GCATC	4 cut(s)	18, 555, 1147, 1255
BmtI	GCTAGC	1 cut(s)	314
BmuI	ACTGGG	1 cut(s)	37
BpmI	CTGGAG	1 cut(s)	167
Bpu10I	CCTNAGC	1 cut(s)	230
BpuEI	CTTGAG	2 cut(s)	421, 739
BpuMI	CCSGG	1 cut(s)	1068
BsaBI	GATNNNNATC	1 cut(s)	1110
BsaJI	CCNNGG	3 cut(s)	443, 1067, 1220
BsaXI	ACNNNNNCTCC	2 cut(s)	521, 551
Bsc4I	CCNNNNNNNGG	3 cut(s)	653, 699, 890
Bse1I	ACTGG	2 cut(s)	43, 1181
Bse21I	CCTNAGG	1 cut(s)	1284
Bse8I	GATNNNNATC	1 cut(s)	1110
BseDI	CCNNGG	3 cut(s)	443, 1067, 1220
BseGI	GGATG	3 cut(s)	194, 1063, 1230
BseJI	GATNNNNATC	1 cut(s)	1110
BseLI	CCNNNNNNNGG	3 cut(s)	653, 699, 890
BseMII	CTCAG	3 cut(s)	221, 771, 1275
BseNI	ACTGG	2 cut(s)	43, 1181
Bsh1236I	CGCG	2 cut(s)	124, 126
BshFI	GGCC	1 cut(s)	378
BsiSI	CCGG	1 cut(s)	1067
BslFI	GGGAC	1 cut(s)	1037
BslI	CCNNNNNNNGG	3 cut(s)	653, 699, 890
BsmAI	GTCTC	2 cut(s)	9, 700
BsmBI	CGTCTC	2 cut(s)	9, 700
BsmFI	GGGAC	1 cut(s)	1037
BsnI	GGCC	1 cut(s)	378
Bsp1286I	GDGCHC	1 cut(s)	901
Bsp143I	GATC	9 cut(s)	56, 142, 178, 245, 289, 328, 456, 643, 985
BspACI	CCGC	5 cut(s)	5, 122, 126, 146, 365
BspANI	GGCC	1 cut(s)	378
BspCNI	CTCAG	3 cut(s)	222, 770, 1276
BspFNI	CGCG	2 cut(s)	124, 126
BspLI	GGNNCC	2 cut(s)	144, 1025
BspOI	GCTAGC	1 cut(s)	314
BspPI	GGATC	8 cut(s)	64, 137, 150, 186, 253, 336, 638, 993
BsrI	ACTGG	2 cut(s)	43, 1181
BssECI	CCNNGG	3 cut(s)	443, 1067, 1220
BssMI	GATC	9 cut(s)	56, 142, 178, 245, 289, 328, 456, 643, 985
BssNAI	GTATAC	1 cut(s)	634
BssT1I	CCWWGG	1 cut(s)	1220
Bst1107I	GTATAC	1 cut(s)	634
Bst4CI	ACNGT	5 cut(s)	252, 391, 418, 746, 1147
Bst6I	CTCTTC	1 cut(s)	1142
BstC8I	GCNNGC	4 cut(s)	312, 376, 901, 1259
BstDEI	CTNAG	4 cut(s)	230, 757, 1008, 1284
BstEII	GGTNACC	1 cut(s)	683
BstF5I	GGATG	3 cut(s)	194, 1063, 1230
BstFNI	CGCG	2 cut(s)	124, 126
BstHHI	GCGC	2 cut(s)	110, 126
BstKTI	GATC	9 cut(s)	59, 145, 181, 248, 292, 331, 459, 646, 988
BstMAI	GTCTC	2 cut(s)	9, 700
BstMBI	GATC	9 cut(s)	56, 142, 178, 245, 289, 328, 456, 643, 985
BstMWI	GCNNNNNNNGC	2 cut(s)	105, 905
BstPI	GGTNACC	1 cut(s)	683
BstSCI	CCNGG	1 cut(s)	1066
BstUI	CGCG	2 cut(s)	124, 126
BstX2I	RGATCY	6 cut(s)	56, 142, 178, 289, 456, 643
BstYI	RGATCY	6 cut(s)	56, 142, 178, 289, 456, 643
BstZ17I	GTATAC	1 cut(s)	634
Bsu36I	CCTNAGG	1 cut(s)	1284
BsuRI	GGCC	1 cut(s)	378
BtsCI	GGATG	3 cut(s)	194, 1063, 1230
BtsI	GCAGTG	1 cut(s)	1038
BtsIMutI	CAGTG	3 cut(s)	248, 751, 1038
Cac8I	GCNNGC	4 cut(s)	312, 376, 901, 1259
CfoI	GCGC	2 cut(s)	110, 126
Cfr13I	GGNCC	3 cut(s)	377, 1024, 1132
Csp6I	GTAC	2 cut(s)	387, 1072
CviAII	CATG	7 cut(s)	338, 523, 689, 847, 1020, 1085, 1193
CviQI	GTAC	2 cut(s)	387, 1072
DdeI	CTNAG	4 cut(s)	230, 757, 1008, 1284
DpnI	GATC	9 cut(s)	58, 144, 180, 247, 291, 330, 458, 645, 987
DpnII	GATC	9 cut(s)	56, 142, 178, 245, 289, 328, 456, 643, 985
Eam1104I	CTCTTC	1 cut(s)	1142
EarI	CTCTTC	1 cut(s)	1142
EciI	GGCGGA	1 cut(s)	135
Eco130I	CCWWGG	1 cut(s)	1220
Eco24I	GRGCYC	1 cut(s)	901
Eco47I	GGWCC	2 cut(s)	1024, 1132
Eco57I	CTGAAG	2 cut(s)	118, 293
Eco81I	CCTNAGG	1 cut(s)	1284
Eco91I	GGTNACC	1 cut(s)	683
EcoO109I	RGGNCCY	1 cut(s)	1132
EcoO65I	GGTNACC	1 cut(s)	683
EcoT14I	CCWWGG	1 cut(s)	1220
EcoT38I	GRGCYC	1 cut(s)	901
ErhI	CCWWGG	1 cut(s)	1220
Esp3I	CGTCTC	2 cut(s)	9, 700
FaeI	CATG	7 cut(s)	341, 526, 692, 850, 1023, 1088, 1196
FalI	AAGNNNNNCTT	2 cut(s)	1121, 1153
FaqI	GGGAC	1 cut(s)	1037
FatI	CATG	7 cut(s)	337, 522, 688, 846, 1019, 1084, 1192
FblI	GTMKAC	1 cut(s)	633
FokI	GGATG	3 cut(s)	181, 1050, 1237
FriOI	GRGCYC	1 cut(s)	901
FspBI	CTAG	6 cut(s)	189, 311, 543, 575, 737, 1271
GlaI	GCGC	2 cut(s)	109, 125
GsuI	CTGGAG	1 cut(s)	167
HaeIII	GGCC	1 cut(s)	378
HapII	CCGG	1 cut(s)	1067
HhaI	GCGC	2 cut(s)	110, 126
Hin1II	CATG	7 cut(s)	341, 526, 692, 850, 1023, 1088, 1196
Hin6I	GCGC	2 cut(s)	108, 124
HinP1I	GCGC	2 cut(s)	108, 124
HincII	GTYRAC	1 cut(s)	1252
HindII	GTYRAC	1 cut(s)	1252
HinfI	GANTC	9 cut(s)	87, 129, 165, 206, 431, 439, 662, 809, 821
HpaI	GTTAAC	1 cut(s)	1252
HpaII	CCGG	1 cut(s)	1067
Hpy166II	GTNNAC	4 cut(s)	362, 540, 634, 1252
Hpy188I	TCNGA	8 cut(s)	86, 142, 238, 256, 444, 480, 760, 814
Hpy8I	GTNNAC	4 cut(s)	362, 540, 634, 1252
Hpy99I	CGWCG	3 cut(s)	86, 165, 596
HpyAV	CCTTC	7 cut(s)	101, 799, 894, 978, 1068, 1199, 1222
HpyCH4III	ACNGT	5 cut(s)	252, 391, 418, 746, 1147
HpyCH4IV	ACGT	1 cut(s)	468
HpyCH4V	TGCA	8 cut(s)	473, 497, 503, 612, 671, 733, 781, 1268
HpyF10VI	GCNNNNNNNGC	2 cut(s)	105, 905
HpyF3I	CTNAG	4 cut(s)	230, 757, 1008, 1284
HpySE526I	ACGT	1 cut(s)	468
Hsp92II	CATG	7 cut(s)	341, 526, 692, 850, 1023, 1088, 1196
HspAI	GCGC	2 cut(s)	108, 124
KspAI	GTTAAC	1 cut(s)	1252
Kzo9I	GATC	9 cut(s)	56, 142, 178, 245, 289, 328, 456, 643, 985
LweI	GCATC	4 cut(s)	18, 555, 1147, 1255
MaeI	CTAG	6 cut(s)	189, 311, 543, 575, 737, 1271
MaeII	ACGT	1 cut(s)	468
MaeIII	GTNAC	4 cut(s)	67, 683, 740, 836
MalI	GATC	9 cut(s)	58, 144, 180, 247, 291, 330, 458, 645, 987
MboI	GATC	9 cut(s)	56, 142, 178, 245, 289, 328, 456, 643, 985
MboII	GAAGA	6 cut(s)	106, 124, 286, 614, 743, 1129
MfeI	CAATTG	1 cut(s)	972
MflI	RGATCY	6 cut(s)	56, 142, 178, 289, 456, 643
MhlI	GDGCHC	1 cut(s)	901
MlyI	GAGTC	2 cut(s)	96, 830
MmeI	TCCRAC	3 cut(s)	64, 234, 507
MroXI	GAANNNNTTC	1 cut(s)	788
MseI	TTAA	2 cut(s)	864, 1251
MslI	CAYNNNNRTG	2 cut(s)	199, 336
MspI	CCGG	1 cut(s)	1067
MspR9I	CCNGG	1 cut(s)	1068
MunI	CAATTG	1 cut(s)	972
MvnI	CGCG	2 cut(s)	124, 126
MwoI	GCNNNNNNNGC	2 cut(s)	105, 905
NciI	CCSGG	1 cut(s)	1068
NdeII	GATC	9 cut(s)	56, 142, 178, 245, 289, 328, 456, 643, 985
NheI	GCTAGC	1 cut(s)	310
NlaIII	CATG	7 cut(s)	341, 526, 692, 850, 1023, 1088, 1196
NlaIV	GGNNCC	2 cut(s)	144, 1025
NmuCI	GTSAC	2 cut(s)	67, 836
PcsI	WCGNNNNNNNCGW	1 cut(s)	58
PdmI	GAANNNNTTC	1 cut(s)	788
PfeI	GAWTC	7 cut(s)	129, 165, 206, 431, 439, 662, 809
PflFI	GACNNNGTC	1 cut(s)	43
PleI	GAGTC	2 cut(s)	95, 829
PpsI	GAGTC	2 cut(s)	95, 829
PpuMI	RGGWCCY	1 cut(s)	1132
Psp5II	RGGWCCY	1 cut(s)	1132
PspEI	GGTNACC	1 cut(s)	683
PspN4I	GGNNCC	2 cut(s)	144, 1025
PspPI	GGNCC	3 cut(s)	377, 1024, 1132
PspPPI	RGGWCCY	1 cut(s)	1132
PsuI	RGATCY	6 cut(s)	56, 142, 178, 289, 456, 643
PsyI	GACNNNGTC	1 cut(s)	43
RsaI	GTAC	2 cut(s)	388, 1073
RsaNI	GTAC	2 cut(s)	387, 1072
RseI	CAYNNNNRTG	2 cut(s)	199, 336
SaqAI	TTAA	2 cut(s)	864, 1251
Sau3AI	GATC	9 cut(s)	56, 142, 178, 245, 289, 328, 456, 643, 985
Sau96I	GGNCC	3 cut(s)	377, 1024, 1132
SchI	GAGTC	2 cut(s)	96, 830
ScrFI	CCNGG	1 cut(s)	1068
SduI	GDGCHC	1 cut(s)	901
SfaNI	GCATC	4 cut(s)	18, 555, 1147, 1255
SinI	GGWCC	2 cut(s)	1024, 1132
SmiMI	CAYNNNNRTG	2 cut(s)	199, 336
SmlI	CTYRAG	2 cut(s)	400, 718
SmoI	CTYRAG	2 cut(s)	400, 718
SsiI	CCGC	5 cut(s)	5, 122, 126, 146, 365
SspMI	CTAG	6 cut(s)	189, 311, 543, 575, 737, 1271
StyD4I	CCNGG	1 cut(s)	1066
StyI	CCWWGG	1 cut(s)	1220
TaaI	ACNGT	5 cut(s)	252, 391, 418, 746, 1147
TaiI	ACGT	1 cut(s)	471
TaqI	TCGA	4 cut(s)	61, 153, 163, 665
TfiI	GAWTC	7 cut(s)	129, 165, 206, 431, 439, 662, 809
Tru1I	TTAA	2 cut(s)	864, 1251
Tru9I	TTAA	2 cut(s)	864, 1251
TscAI	CASTG	3 cut(s)	255, 751, 1038
TseFI	GTSAC	2 cut(s)	67, 836
Tsp45I	GTSAC	2 cut(s)	67, 836
TspDTI	ATGAA	6 cut(s)	444, 894, 1073, 1136, 1181, 1241
TspGWI	ACGGA	1 cut(s)	232
TspRI	CASTG	3 cut(s)	255, 751, 1038
Tth111I	GACNNNGTC	1 cut(s)	43
VpaK11BI	GGWCC	2 cut(s)	1024, 1132
XapI	RAATTY	3 cut(s)	505, 605, 707
XcmI	CCANNNNNNNNNTGG	3 cut(s)	50, 695, 1099
XmiI	GTMKAC	1 cut(s)	633
XmnI	GAANNNNTTC	1 cut(s)	788
XspI	CTAG	6 cut(s)	189, 311, 543, 575, 737, 1271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.