Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0002462

Physical Location & Seq

Genomic Coordinates Forward (+)

13351132 .. 13353846

Gene Structure 2715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G102000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGGTGGGTCGCCGAGAGAAAGCGCAGTCTTTCTGCAAATCGAGGGTCGGCGTTGCCATAGCAATCGGAGTCCTTCTCGGCTGTGTCTTCGCCTTGTGCTTCCCCAATGGCTTTGTTTCAATTTCTAATCCGGCCCCTATTCTCAATCACCGCTTCGTCAAATCCATTTCTCAGGTTGGTTCTACCCTGTGTGAACCATCTGAACGGATCAACCTGTTGAAATCAGAGTTTGTGGCGGCTTCTGAGAAAAATGCCGAGTTGAAGAAGCAGGTTAGGGAATTGACTGAAAAGATTCGGTTGGCGGAACAAAGGAAAGATCAGGCAGAAAAACAGGTTCTTGTGTTAGGTGATCAGAAGAAAGCTGGGCCTTTTGGTACTGTCAAAGGCTTAAGAACCAACCCTAGTGTTCTTCCTGATGAATCTGTGAATCCAAGATTAGCAAAGATTTTGGAGAAAGTAGCTGTTAATAGAGAGCTTATAGTTGCACTTGCAAATTCAAATGTGAAGCAAATGTTGGAGGTATGGTTCACTAATATTAAGAGAGTGGGCATATCCAATTATCTGGTTGTTGCTTTGGATGAAGAAGTTGCAAAGTACTGTGAATCAAAAGATGTTCCAGTTTATAAGAGAGACCCCGATAAAGTCATTGATTCAGTTGCGAGGACTGGAGGGAACCATGCTGTCTCTGGGTTGAAATTTCGTATTTTGAGGGAGTTTTTGCAGCTGGGATATAGTGTTCTTCTGTCGGATGTTGATATTGTGTACTTGCAAAACCCTTTTTTTTATCTATACCGTGATTCAGATGTAGAGTCGATGACTGATGGTCATGACAATAGGACTGCTTATGGCTATAACGACGTCTTTGATGAGCCAGGAATGGGCTGGGCTCGATATGCGCATACAATGCGTATGTGGGTTTATAACTCTGGTTTCTTCTACATTAGACCAACAATTCCTTCAATTGAGCTGTTGGATCGTGTGGCCAATCGACTGTCCAGGGAGCAGGCTTGGGACCAGGCAGTTTTCAATGAGGAACTCTTCTTCCCTTCTCATCCTGGGTACGAGGGGCTTCATGCTTCCAGGAGAACTATGGATTTCTATCTTTTCATGAATAGCAAGGTCCTCTTCAAGACTGTGAGGAAAGATGCTAATCTGAGCAAGTTGAAGCCGGTAATCGTTCATGTTAATTACCATCCTGATAAGCTTCCTAGAATGTTAGCAATTGTGGAATTTTTTGTCAACGGGAAGCAGGATGCTCTGAAACCTTTTCCTGATGGTTCAGATTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00514 map00514

Pfam Domains

Protein Families

Nucleotid_trans

Protein Analysis

430

Amino Acids

48.71

Weight (kDa)

9.03

Isoelectric Point (pI)

30.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19360 AT1G19360 AT1G75110
fragaria_vesca	FvH4_2g08270 FvH4_2g08270 FvH4_2g08270 FvH4_2g08270 FvH4_2g40081
malus_domestica	MD08G1032600.v1.1 MD10G1080700.v1.1 MD15G1029300.v1.1
prunus_persica	Prupe.1G382100_v2.0.a1 Prupe.8G102000_v2.0.a1
pyrus_communis	pycom05g06040 pycom08g02590 pycom10g06390 pycom15g02600
rosa_chinensis	RchiOBHm_Chr6g0263151 RchiOBHm_Chr6g0300661
rosa_laevigata	RLG00000011313 RLG00000014368
rosa_multiflora	Rmu_co8387041.1_g000001 Rmu_sc0004226.1_g000014 Rmu_sc0014374.1_g000002 Rmu_sc0015149.1_g000002
rosa_roxburghii	Rroxscaffold_176G00430950 Rroxscaffold_7G00167540 Rroxscaffold_7G00204620
rosa_rugosa	Rorug06G0003900 Rorug06G0298200
rosa_samantha	Rh6AG123000 Rh6AG410900 Rh6BG118000 Rh6BG418100 Rh6CG116200 Rh6CG425600 Rh6DG104700 Rh6DG411000
rosa_wichuraiana	Rw0G002190 Rw6G010570 Rw6G035950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	624, 921
AatII	GACGTC	1 cut(s)	861
Acc16I	TGCGCA	1 cut(s)	897
Acc36I	ACCTGC	1 cut(s)	259
AciI	CCGC	3 cut(s)	151, 236, 302
AclWI	GGATC	2 cut(s)	215, 981
AcoI	YGGCCR	1 cut(s)	981
AcsI	RAATTY	3 cut(s)	493, 695, 1229
AcyI	GRCGYC	1 cut(s)	858
AfaI	GTAC	4 cut(s)	376, 596, 764, 1061
AfiI	CCNNNNNNNGG	1 cut(s)	878
AflII	CTTAAG	1 cut(s)	388
AgsI	TTSAA	9 cut(s)	120, 220, 262, 498, 694, 960, 1027, 1129, 1165
AhdI	GACNNNNNGTC	1 cut(s)	822
AjnI	CCWGG	5 cut(s)	871, 995, 1014, 1054, 1079
AjuI	GAANNNNNNNTTGG	4 cut(s)	497, 529, 940, 972
AloI	GAACNNNNNNTCC	6 cut(s)	509, 541, 720, 752, 1026, 1058
AluBI	AGCT	6 cut(s)	362, 461, 475, 724, 967, 1204
AluI	AGCT	6 cut(s)	362, 461, 475, 724, 967, 1204
Alw26I	GTCTC	2 cut(s)	624, 688
AlwI	GGATC	2 cut(s)	215, 981
AoxI	GGCC	3 cut(s)	132, 365, 981
ApeKI	GCWGC	1 cut(s)	721
ApoI	RAATTY	3 cut(s)	493, 695, 1229
ArsI	GACNNNNNNTTYG	2 cut(s)	30, 62
Asp700I	GAANNNNTTC	1 cut(s)	291
AspLEI	GCGC	2 cut(s)	25, 898
AspS9I	GGNCC	4 cut(s)	133, 365, 1012, 1120
AsuHPI	GGTGA	2 cut(s)	140, 359
AvaII	GGWCC	2 cut(s)	1012, 1120
BalI	TGGCCA	1 cut(s)	983
BanII	GRGCYC	1 cut(s)	889
BbsI	GAAGAC	1 cut(s)	79
BbvI	GCAGC	1 cut(s)	733
BccI	CCATC	4 cut(s)	205, 815, 1200, 1268
BciT130I	CCWGG	5 cut(s)	873, 997, 1016, 1056, 1081
BclI	TGATCA	1 cut(s)	349
BcoDI	GTCTC	2 cut(s)	624, 688
BfaI	CTAG	2 cut(s)	402, 1209
BfrI	CTTAAG	1 cut(s)	388
BfuAI	ACCTGC	1 cut(s)	259
BisI	GCNGC	2 cut(s)	237, 722
BlsI	GCNGC	2 cut(s)	238, 723
BmcAI	AGTACT	1 cut(s)	596
Bme1390I	CCNGG	5 cut(s)	873, 997, 1016, 1056, 1081
Bme18I	GGWCC	2 cut(s)	1012, 1120
BmeRI	GACNNNNNGTC	1 cut(s)	822
BmgT120I	GGNCC	4 cut(s)	133, 365, 1012, 1120
BmiI	GGNNCC	3 cut(s)	135, 674, 1013
BmrFI	CCNGG	5 cut(s)	873, 997, 1016, 1056, 1081
BmsI	GCATC	2 cut(s)	1135, 1243
BpiI	GAAGAC	1 cut(s)	79
BplI	GAGNNNNNCTC	2 cut(s)	60, 92
BpmI	CTGGAG	1 cut(s)	687
BsaBI	GATNNNNATC	2 cut(s)	1098, 1149
BsaHI	GRCGYC	1 cut(s)	858
BsaI	GGTCTC	1 cut(s)	624
BsaJI	CCNNGG	2 cut(s)	996, 1055
BsaXI	ACNNNNNCTCC	2 cut(s)	509, 539
Bsc4I	CCNNNNNNNGG	1 cut(s)	878
Bse118I	RCCGGY	1 cut(s)	1168
Bse1I	ACTGG	2 cut(s)	617, 670
Bse8I	GATNNNNATC	2 cut(s)	1098, 1149
BseBI	CCWGG	5 cut(s)	873, 997, 1016, 1056, 1081
BseDI	CCNNGG	2 cut(s)	996, 1055
BseGI	GGATG	5 cut(s)	583, 754, 1051, 1192, 1258
BseJI	GATNNNNATC	2 cut(s)	1098, 1149
BseLI	CCNNNNNNNGG	1 cut(s)	878
BseMII	CTCAG	3 cut(s)	185, 234, 1145
BseNI	ACTGG	2 cut(s)	617, 670
BseXI	GCAGC	1 cut(s)	733
BseYI	CCCAGC	3 cut(s)	362, 724, 882
BshFI	GGCC	3 cut(s)	134, 367, 983
BsiSI	CCGG	2 cut(s)	131, 1169
BslFI	GGGAC	1 cut(s)	1025
BslI	CCNNNNNNNGG	1 cut(s)	878
BsmAI	GTCTC	2 cut(s)	624, 688
BsmFI	GGGAC	1 cut(s)	1025
BsnI	GGCC	3 cut(s)	134, 367, 983
Bso31I	GGTCTC	1 cut(s)	624
Bsp1286I	GDGCHC	1 cut(s)	889
Bsp143I	GATC	4 cut(s)	207, 316, 349, 973
BspACI	CCGC	3 cut(s)	151, 236, 302
BspANI	GGCC	3 cut(s)	134, 367, 983
BspCNI	CTCAG	3 cut(s)	184, 235, 1146
BspHI	TCATGA	2 cut(s)	826, 1107
BspLI	GGNNCC	3 cut(s)	135, 674, 1013
BspMI	ACCTGC	1 cut(s)	259
BspPI	GGATC	2 cut(s)	215, 981
BspTI	CTTAAG	1 cut(s)	388
BspTNI	GGTCTC	1 cut(s)	624
BsrFI	RCCGGY	1 cut(s)	1168
BsrI	ACTGG	2 cut(s)	617, 670
BssAI	RCCGGY	1 cut(s)	1168
BssECI	CCNNGG	2 cut(s)	996, 1055
BssMI	GATC	4 cut(s)	207, 316, 349, 973
BssNI	GRCGYC	1 cut(s)	858
Bst2UI	CCWGG	5 cut(s)	873, 997, 1016, 1056, 1081
Bst4CI	ACNGT	5 cut(s)	379, 599, 794, 993, 1135
Bst6I	CTCTTC	2 cut(s)	1043, 1130
BstACI	GRCGYC	1 cut(s)	858
BstAFI	CTTAAG	1 cut(s)	388
BstAPI	GCANNNNNTGC	1 cut(s)	904
BstC8I	GCNNGC	1 cut(s)	1005
BstDEI	CTNAG	3 cut(s)	171, 243, 1154
BstF5I	GGATG	5 cut(s)	583, 754, 1051, 1192, 1258
BstHHI	GCGC	2 cut(s)	25, 898
BstKTI	GATC	4 cut(s)	210, 319, 352, 976
BstMAI	GTCTC	2 cut(s)	624, 688
BstMBI	GATC	4 cut(s)	207, 316, 349, 973
BstMWI	GCNNNNNNNGC	2 cut(s)	893, 904
BstNI	CCWGG	5 cut(s)	873, 997, 1016, 1056, 1081
BstSCI	CCNGG	5 cut(s)	871, 995, 1014, 1054, 1079
BstV1I	GCAGC	1 cut(s)	733
BstV2I	GAAGAC	1 cut(s)	79
BstXI	CCANNNNNNTGG	1 cut(s)	562
BsuRI	GGCC	3 cut(s)	134, 367, 983
BtsCI	GGATG	5 cut(s)	583, 754, 1051, 1192, 1258
BveI	ACCTGC	1 cut(s)	259
Cac8I	GCNNGC	1 cut(s)	1005
CciI	TCATGA	2 cut(s)	826, 1107
CfoI	GCGC	2 cut(s)	25, 898
Cfr10I	RCCGGY	1 cut(s)	1168
Cfr13I	GGNCC	4 cut(s)	133, 365, 1012, 1120
Csp6I	GTAC	4 cut(s)	375, 595, 763, 1060
CviAII	CATG	5 cut(s)	677, 827, 1073, 1108, 1181
CviQI	GTAC	4 cut(s)	375, 595, 763, 1060
DdeI	CTNAG	3 cut(s)	171, 243, 1154
DpnI	GATC	4 cut(s)	209, 318, 351, 975
DpnII	GATC	4 cut(s)	207, 316, 349, 973
DriI	GACNNNNNGTC	1 cut(s)	822
EaeI	YGGCCR	1 cut(s)	981
Eam1104I	CTCTTC	2 cut(s)	1043, 1130
Eam1105I	GACNNNNNGTC	1 cut(s)	822
EarI	CTCTTC	2 cut(s)	1043, 1130
EciI	GGCGGA	1 cut(s)	317
Eco24I	GRGCYC	1 cut(s)	889
Eco31I	GGTCTC	1 cut(s)	624
Eco47I	GGWCC	2 cut(s)	1012, 1120
EcoO109I	RGGNCCY	1 cut(s)	1120
EcoRII	CCWGG	5 cut(s)	871, 995, 1014, 1054, 1079
EcoT38I	GRGCYC	1 cut(s)	889
FaeI	CATG	5 cut(s)	680, 830, 1076, 1111, 1184
FalI	AAGNNNNNCTT	2 cut(s)	1109, 1141
FaqI	GGGAC	1 cut(s)	1025
FatI	CATG	5 cut(s)	676, 826, 1072, 1107, 1180
FbaI	TGATCA	1 cut(s)	349
Fnu4HI	GCNGC	2 cut(s)	237, 722
FokI	GGATG	5 cut(s)	590, 761, 1038, 1179, 1265
FriOI	GRGCYC	1 cut(s)	889
Fsp4HI	GCNGC	2 cut(s)	237, 722
FspAI	RTGCGCAY	1 cut(s)	897
FspBI	CTAG	2 cut(s)	402, 1209
FspI	TGCGCA	1 cut(s)	897
GlaI	GCGC	2 cut(s)	24, 897
GluI	GCNGC	2 cut(s)	237, 722
GsaI	CCCAGC	3 cut(s)	366, 728, 886
GsuI	CTGGAG	1 cut(s)	687
HaeIII	GGCC	3 cut(s)	134, 367, 983
HapII	CCGG	2 cut(s)	131, 1169
HhaI	GCGC	2 cut(s)	25, 898
Hin1I	GRCGYC	1 cut(s)	858
Hin1II	CATG	5 cut(s)	680, 830, 1076, 1111, 1184
Hin6I	GCGC	2 cut(s)	23, 896
HinP1I	GCGC	2 cut(s)	23, 896
HincII	GTYRAC	1 cut(s)	1240
HindII	GTYRAC	1 cut(s)	1240
HindIII	AAGCTT	1 cut(s)	1202
HinfI	GANTC	8 cut(s)	69, 292, 419, 427, 602, 650, 797, 809
HpaII	CCGG	2 cut(s)	131, 1169
HphI	GGTGA	2 cut(s)	140, 359
Hpy166II	GTNNAC	4 cut(s)	194, 528, 763, 1240
Hpy188III	TCNNGA	6 cut(s)	413, 827, 1108, 1129, 1196, 1271
Hpy8I	GTNNAC	4 cut(s)	194, 528, 763, 1240
Hpy99I	CGWCG	1 cut(s)	860
HpyAV	CCTTC	3 cut(s)	83, 966, 1056
HpyCH4III	ACNGT	5 cut(s)	379, 599, 794, 993, 1135
HpyCH4IV	ACGT	1 cut(s)	858
HpyCH4V	TGCA	6 cut(s)	36, 485, 491, 590, 721, 769
HpyF10VI	GCNNNNNNNGC	2 cut(s)	893, 904
HpyF3I	CTNAG	3 cut(s)	171, 243, 1154
HpySE526I	ACGT	1 cut(s)	858
Hsp92I	GRCGYC	1 cut(s)	858
Hsp92II	CATG	5 cut(s)	680, 830, 1076, 1111, 1184
HspAI	GCGC	2 cut(s)	23, 896
Ksp22I	TGATCA	1 cut(s)	349
Kzo9I	GATC	4 cut(s)	207, 316, 349, 973
LmnI	GCTCC	1 cut(s)	1000
Lsp1109I	GCAGC	1 cut(s)	733
LweI	GCATC	2 cut(s)	1135, 1243
MaeI	CTAG	2 cut(s)	402, 1209
MaeII	ACGT	1 cut(s)	858
MalI	GATC	4 cut(s)	209, 318, 351, 975
MboI	GATC	4 cut(s)	207, 316, 349, 973
MfeI	CAATTG	2 cut(s)	960, 1221
MhlI	GDGCHC	1 cut(s)	889
MlsI	TGGCCA	1 cut(s)	983
MluNI	TGGCCA	1 cut(s)	983
MlyI	GAGTC	2 cut(s)	78, 818
MmeI	TCCRAC	3 cut(s)	495, 726, 951
MnlI	CCTC	9 cut(s)	36, 511, 654, 662, 702, 1024, 1057, 1131, 1133
Mox20I	TGGCCA	1 cut(s)	983
MroXI	GAANNNNTTC	1 cut(s)	291
MscI	TGGCCA	1 cut(s)	983
MseI	TTAA	4 cut(s)	389, 465, 537, 1185
Msp20I	TGGCCA	1 cut(s)	983
MspA1I	CMGCKG	1 cut(s)	724
MspCI	CTTAAG	1 cut(s)	388
MspI	CCGG	2 cut(s)	131, 1169
MspR9I	CCNGG	5 cut(s)	873, 997, 1016, 1056, 1081
MunI	CAATTG	2 cut(s)	960, 1221
MvaI	CCWGG	5 cut(s)	873, 997, 1016, 1056, 1081
MwoI	GCNNNNNNNGC	2 cut(s)	893, 904
NdeII	GATC	4 cut(s)	207, 316, 349, 973
NlaIII	CATG	5 cut(s)	680, 830, 1076, 1111, 1184
NlaIV	GGNNCC	3 cut(s)	135, 674, 1013
NmeAIII	GCCGAG	3 cut(s)	38, 57, 280
NsbI	TGCGCA	1 cut(s)	897
PagI	TCATGA	2 cut(s)	826, 1107
PdmI	GAANNNNTTC	1 cut(s)	291
PfeI	GAWTC	6 cut(s)	292, 419, 427, 602, 650, 797
PfoI	TCCNGGA	1 cut(s)	1079
PkrI	GCNGC	2 cut(s)	238, 723
PleI	GAGTC	2 cut(s)	77, 817
PpsI	GAGTC	2 cut(s)	77, 817
PpuMI	RGGWCCY	1 cut(s)	1120
PsiI	TTATAA	2 cut(s)	624, 921
Psp5II	RGGWCCY	1 cut(s)	1120
Psp6I	CCWGG	5 cut(s)	871, 995, 1014, 1054, 1079
PspFI	CCCAGC	3 cut(s)	362, 724, 882
PspGI	CCWGG	5 cut(s)	871, 995, 1014, 1054, 1079
PspN4I	GGNNCC	3 cut(s)	135, 674, 1013
PspPI	GGNCC	4 cut(s)	133, 365, 1012, 1120
PspPPI	RGGWCCY	1 cut(s)	1120
PvuII	CAGCTG	1 cut(s)	724
RsaI	GTAC	4 cut(s)	376, 596, 764, 1061
RsaNI	GTAC	4 cut(s)	375, 595, 763, 1060
SaqAI	TTAA	4 cut(s)	389, 465, 537, 1185
SatI	GCNGC	2 cut(s)	237, 722
Sau3AI	GATC	4 cut(s)	207, 316, 349, 973
Sau96I	GGNCC	4 cut(s)	133, 365, 1012, 1120
ScaI	AGTACT	1 cut(s)	596
SchI	GAGTC	2 cut(s)	78, 818
ScrFI	CCNGG	5 cut(s)	873, 997, 1016, 1056, 1081
SduI	GDGCHC	1 cut(s)	889
SfaNI	GCATC	2 cut(s)	1135, 1243
SinI	GGWCC	2 cut(s)	1012, 1120
SmlI	CTYRAG	1 cut(s)	388
SmoI	CTYRAG	1 cut(s)	388
SsiI	CCGC	3 cut(s)	151, 236, 302
SspI	AATATT	1 cut(s)	535
SspMI	CTAG	2 cut(s)	402, 1209
StyD4I	CCNGG	5 cut(s)	871, 995, 1014, 1054, 1079
TaaI	ACNGT	5 cut(s)	379, 599, 794, 993, 1135
TaiI	ACGT	1 cut(s)	861
TaqI	TCGA	4 cut(s)	41, 812, 889, 988
TatI	WGTACW	2 cut(s)	594, 762
TauI	GCSGC	1 cut(s)	239
TfiI	GAWTC	6 cut(s)	292, 419, 427, 602, 650, 797
Tru1I	TTAA	4 cut(s)	389, 465, 537, 1185
Tru9I	TTAA	4 cut(s)	389, 465, 537, 1185
TseI	GCWGC	1 cut(s)	721
TspDTI	ATGAA	6 cut(s)	432, 594, 1061, 1096, 1124, 1169
TspGWI	ACGGA	1 cut(s)	220
Vha464I	CTTAAG	1 cut(s)	388
VpaK11BI	GGWCC	2 cut(s)	1012, 1120
XapI	RAATTY	3 cut(s)	493, 695, 1229
XcmI	CCANNNNNNNNNTGG	3 cut(s)	683, 879, 1087
XmnI	GAANNNNTTC	1 cut(s)	291
XspI	CTAG	2 cut(s)	402, 1209
ZraI	GACGTC	1 cut(s)	859
ZrmI	AGTACT	1 cut(s)	596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.