Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8387041.1

Orthogroup ID

OG0002462

Physical Location & Seq

Genomic Coordinates Reverse (-)

342 .. 1121

Gene Structure 780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8387041.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

atgttggagttatggttcaataatattaaaagagtgggaataaccaattatctggttgttgctttggatgaagaaattgccagatactgtgaagcaaaagatgtgccagtatataagagagacccagataaagacattgattctgtcacgagaactggagggaaccatgctgtctctggtatgaaatttcgtatcttgagggagtttttgcagctgggatatagtgtccttctgtcagatgtggatattgtgtacctgcaaaacccttttaatcatctctatcgtgattcagatgtggagtccatgacagatgggcatgataatagaactgcttatggcttcaatgatgtctttgatgaacccaagatgggttgggctcgatatgctcatacaatgcgtatgtgggtctataactctggcttcttctacattcgaccaacaattccttcaattgaactgttggatcgcgtggctggtcggctttctagggaggcaaagtcttgggaccaggcagttttcaatgaggaactctttttcccttctcatcctgggtacgatggccttcatgcttccaggagaactatggatttctatctctttatgaatagcaaggtcctctttaagactgtgaggaaagatgctaatctaagcaagttgaagccggtaattgttcatgtcaattaccatcccgataaatttccacgtatgctagcagttgtggaattttatgttaatgggaagcaggatgcactgaaatcttttcctgatggctcagagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00514 map00514

Pfam Domains

Protein Families

Nucleotid_trans

Protein Analysis

259

Amino Acids

30.15

Weight (kDa)

6.46

Isoelectric Point (pI)

34.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19360 AT1G19360 AT1G75110
fragaria_vesca	FvH4_2g08270 FvH4_2g08270 FvH4_2g08270 FvH4_2g08270 FvH4_2g40081
malus_domestica	MD08G1032600.v1.1 MD10G1080700.v1.1 MD15G1029300.v1.1
prunus_persica	Prupe.1G382100_v2.0.a1 Prupe.8G102000_v2.0.a1
pyrus_communis	pycom05g06040 pycom08g02590 pycom10g06390 pycom15g02600
rosa_chinensis	RchiOBHm_Chr6g0263151 RchiOBHm_Chr6g0300661
rosa_laevigata	RLG00000011313 RLG00000014368
rosa_multiflora	Rmu_co8387041.1_g000001 Rmu_sc0004226.1_g000014 Rmu_sc0014374.1_g000002 Rmu_sc0015149.1_g000002
rosa_roxburghii	Rroxscaffold_176G00430950 Rroxscaffold_7G00167540 Rroxscaffold_7G00204620
rosa_rugosa	Rorug06G0003900 Rorug06G0298200
rosa_samantha	Rh6AG123000 Rh6AG410900 Rh6BG118000 Rh6BG418100 Rh6CG116200 Rh6CG425600 Rh6DG104700 Rh6DG411000
rosa_wichuraiana	Rw0G002190 Rw6G010570 Rw6G035950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	264
AccII	CGCG	1 cut(s)	468
AclWI	GGATC	1 cut(s)	471
AcsI	RAATTY	3 cut(s)	185, 695, 722
AfaI	GTAC	2 cut(s)	254, 554
AfiI	CCNNNNNNNGG	1 cut(s)	368
AgsI	TTSAA	6 cut(s)	19, 343, 450, 455, 520, 658
AjnI	CCWGG	3 cut(s)	507, 547, 572
AjuI	GAANNNNNNNTTGG	2 cut(s)	430, 462
AloI	GAACNNNNNNTCC	3 cut(s)	31, 519, 551
AluBI	AGCT	1 cut(s)	214
AluI	AGCT	1 cut(s)	214
Alw26I	GTCTC	2 cut(s)	114, 178
AlwI	GGATC	1 cut(s)	471
AlwNI	CAGNNNCTG	1 cut(s)	87
AoxI	GGCC	1 cut(s)	559
ApeKI	GCWGC	1 cut(s)	211
ApoI	RAATTY	3 cut(s)	185, 695, 722
AspS9I	GGNCC	2 cut(s)	505, 613
AsuNHI	GCTAGC	1 cut(s)	709
AvaII	GGWCC	2 cut(s)	505, 613
BanII	GRGCYC	1 cut(s)	379
BauI	CACGAG	1 cut(s)	148
BbvI	GCAGC	1 cut(s)	223
BccI	CCATC	5 cut(s)	305, 361, 551, 693, 761
BciT130I	CCWGG	3 cut(s)	509, 549, 574
BcoDI	GTCTC	2 cut(s)	114, 178
BfaI	CTAG	2 cut(s)	486, 710
BfuAI	ACCTGC	1 cut(s)	264
BisI	GCNGC	1 cut(s)	212
BlsI	GCNGC	1 cut(s)	213
Bme1390I	CCNGG	3 cut(s)	509, 549, 574
Bme18I	GGWCC	2 cut(s)	505, 613
BmgT120I	GGNCC	2 cut(s)	505, 613
BmiI	GGNNCC	2 cut(s)	164, 506
BmrFI	CCNGG	3 cut(s)	509, 549, 574
BmsI	GCATC	2 cut(s)	628, 736
BmtI	GCTAGC	1 cut(s)	713
BpmI	CTGGAG	1 cut(s)	177
BpuEI	CTTGAG	1 cut(s)	217
BsaAI	YACGTR	1 cut(s)	704
BsaBI	GATNNNNATC	2 cut(s)	591, 642
BsaI	GGTCTC	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	548
BsaXI	ACNNNNNCTCC	3 cut(s)	29, 482, 512
Bsc4I	CCNNNNNNNGG	1 cut(s)	368
Bse118I	RCCGGY	1 cut(s)	661
Bse1I	ACTGG	2 cut(s)	107, 160
Bse8I	GATNNNNATC	2 cut(s)	591, 642
BseBI	CCWGG	3 cut(s)	509, 549, 574
BseDI	CCNNGG	1 cut(s)	548
BseGI	GGATG	4 cut(s)	73, 544, 685, 751
BseJI	GATNNNNATC	2 cut(s)	591, 642
BseLI	CCNNNNNNNGG	1 cut(s)	368
BseNI	ACTGG	2 cut(s)	107, 160
BseXI	GCAGC	1 cut(s)	223
BseYI	CCCAGC	1 cut(s)	214
Bsh1236I	CGCG	1 cut(s)	468
BshFI	GGCC	1 cut(s)	561
BsiSI	CCGG	1 cut(s)	662
BslFI	GGGAC	1 cut(s)	518
BslI	CCNNNNNNNGG	1 cut(s)	368
BsmAI	GTCTC	2 cut(s)	114, 178
BsmFI	GGGAC	1 cut(s)	518
BsnI	GGCC	1 cut(s)	561
Bso31I	GGTCTC	1 cut(s)	114
Bsp1286I	GDGCHC	1 cut(s)	379
Bsp143I	GATC	1 cut(s)	463
BspANI	GGCC	1 cut(s)	561
BspFNI	CGCG	1 cut(s)	468
BspLI	GGNNCC	2 cut(s)	164, 506
BspMI	ACCTGC	1 cut(s)	264
BspOI	GCTAGC	1 cut(s)	713
BspPI	GGATC	1 cut(s)	471
BspTNI	GGTCTC	1 cut(s)	114
BsrFI	RCCGGY	1 cut(s)	661
BsrI	ACTGG	2 cut(s)	107, 160
BssAI	RCCGGY	1 cut(s)	661
BssECI	CCNNGG	1 cut(s)	548
BssMI	GATC	1 cut(s)	463
BssSI	CACGAG	1 cut(s)	148
Bst2BI	CACGAG	1 cut(s)	148
Bst2UI	CCWGG	3 cut(s)	509, 549, 574
Bst4CI	ACNGT	3 cut(s)	89, 459, 628
BstBAI	YACGTR	1 cut(s)	704
BstC8I	GCNNGC	1 cut(s)	711
BstDEI	CTNAG	2 cut(s)	647, 772
BstF5I	GGATG	4 cut(s)	73, 544, 685, 751
BstFNI	CGCG	1 cut(s)	468
BstKTI	GATC	1 cut(s)	466
BstMAI	GTCTC	2 cut(s)	114, 178
BstMBI	GATC	1 cut(s)	463
BstMWI	GCNNNNNNNGC	1 cut(s)	383
BstNI	CCWGG	3 cut(s)	509, 549, 574
BstSCI	CCNGG	3 cut(s)	507, 547, 572
BstUI	CGCG	1 cut(s)	468
BstV1I	GCAGC	1 cut(s)	223
BstXI	CCANNNNNNTGG	1 cut(s)	52
BsuRI	GGCC	1 cut(s)	561
BtsCI	GGATG	4 cut(s)	73, 544, 685, 751
BtsIMutI	CAGTG	1 cut(s)	749
BveI	ACCTGC	1 cut(s)	264
Cac8I	GCNNGC	1 cut(s)	711
CaiI	CAGNNNCTG	1 cut(s)	87
Cfr10I	RCCGGY	1 cut(s)	661
Cfr13I	GGNCC	2 cut(s)	505, 613
Csp6I	GTAC	2 cut(s)	253, 553
CviAII	CATG	5 cut(s)	167, 304, 317, 566, 674
CviJI	RGCY	9 cut(s)	214, 339, 377, 420, 473, 481, 561, 661, 771
CviKI_1	RGCY	9 cut(s)	214, 339, 377, 420, 473, 481, 561, 661, 771
CviQI	GTAC	2 cut(s)	253, 553
DdeI	CTNAG	2 cut(s)	647, 772
DpnI	GATC	1 cut(s)	465
DpnII	GATC	1 cut(s)	463
Eco24I	GRGCYC	1 cut(s)	379
Eco31I	GGTCTC	1 cut(s)	114
Eco47I	GGWCC	2 cut(s)	505, 613
EcoO109I	RGGNCCY	1 cut(s)	613
EcoRII	CCWGG	3 cut(s)	507, 547, 572
EcoT38I	GRGCYC	1 cut(s)	379
FaeI	CATG	5 cut(s)	170, 307, 320, 569, 677
FalI	AAGNNNNNCTT	2 cut(s)	602, 634
FaqI	GGGAC	1 cut(s)	518
FatI	CATG	5 cut(s)	166, 303, 316, 565, 673
Fnu4HI	GCNGC	1 cut(s)	212
FokI	GGATG	4 cut(s)	80, 531, 672, 758
FriOI	GRGCYC	1 cut(s)	379
Fsp4HI	GCNGC	1 cut(s)	212
FspBI	CTAG	2 cut(s)	486, 710
GluI	GCNGC	1 cut(s)	212
GsaI	CCCAGC	1 cut(s)	218
GsuI	CTGGAG	1 cut(s)	177
HaeIII	GGCC	1 cut(s)	561
HapII	CCGG	1 cut(s)	662
Hin1II	CATG	5 cut(s)	170, 307, 320, 569, 677
HinfI	GANTC	3 cut(s)	140, 287, 299
HpaII	CCGG	1 cut(s)	662
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188I	TCNGA	3 cut(s)	238, 292, 775
Hpy188III	TCNNGA	5 cut(s)	148, 196, 284, 689, 764
Hpy8I	GTNNAC	1 cut(s)	253
HpyAV	CCTTC	4 cut(s)	239, 456, 549, 572
HpyCH4III	ACNGT	3 cut(s)	89, 459, 628
HpyCH4IV	ACGT	1 cut(s)	703
HpyCH4V	TGCA	3 cut(s)	211, 259, 749
HpyF10VI	GCNNNNNNNGC	1 cut(s)	383
HpyF3I	CTNAG	2 cut(s)	647, 772
HpySE526I	ACGT	1 cut(s)	703
Hsp92II	CATG	5 cut(s)	170, 307, 320, 569, 677
Kzo9I	GATC	1 cut(s)	463
Lsp1109I	GCAGC	1 cut(s)	223
LweI	GCATC	2 cut(s)	628, 736
MaeI	CTAG	2 cut(s)	486, 710
MaeII	ACGT	1 cut(s)	703
MaeIII	GTNAC	1 cut(s)	145
MalI	GATC	1 cut(s)	465
MboI	GATC	1 cut(s)	463
MboII	GAAGA	2 cut(s)	83, 415
MfeI	CAATTG	1 cut(s)	450
MhlI	GDGCHC	1 cut(s)	379
MluCI	AATT	9 cut(s)	46, 75, 185, 441, 450, 666, 679, 695, 722
MlyI	GAGTC	1 cut(s)	308
MmeI	TCCRAC	1 cut(s)	441
MnlI	CCTC	6 cut(s)	152, 192, 484, 517, 624, 626
MseI	TTAA	4 cut(s)	27, 270, 621, 732
MspA1I	CMGCKG	1 cut(s)	214
MspI	CCGG	1 cut(s)	662
MspR9I	CCNGG	3 cut(s)	509, 549, 574
MunI	CAATTG	1 cut(s)	450
MvaI	CCWGG	3 cut(s)	509, 549, 574
MvnI	CGCG	1 cut(s)	468
MwoI	GCNNNNNNNGC	1 cut(s)	383
NdeII	GATC	1 cut(s)	463
NheI	GCTAGC	1 cut(s)	709
NlaIII	CATG	5 cut(s)	170, 307, 320, 569, 677
NlaIV	GGNNCC	2 cut(s)	164, 506
NmuCI	GTSAC	1 cut(s)	145
PfeI	GAWTC	2 cut(s)	140, 287
PfoI	TCCNGGA	1 cut(s)	572
PkrI	GCNGC	1 cut(s)	213
PleI	GAGTC	1 cut(s)	307
PpsI	GAGTC	1 cut(s)	307
Ppu21I	YACGTR	1 cut(s)	704
PpuMI	RGGWCCY	1 cut(s)	613
Psp5II	RGGWCCY	1 cut(s)	613
Psp6I	CCWGG	3 cut(s)	507, 547, 572
PspFI	CCCAGC	1 cut(s)	214
PspGI	CCWGG	3 cut(s)	507, 547, 572
PspN4I	GGNNCC	2 cut(s)	164, 506
PspPI	GGNCC	2 cut(s)	505, 613
PspPPI	RGGWCCY	1 cut(s)	613
PstNI	CAGNNNCTG	1 cut(s)	87
PvuII	CAGCTG	1 cut(s)	214
RsaI	GTAC	2 cut(s)	254, 554
RsaNI	GTAC	2 cut(s)	253, 553
SaqAI	TTAA	4 cut(s)	27, 270, 621, 732
SatI	GCNGC	1 cut(s)	212
Sau3AI	GATC	1 cut(s)	463
Sau96I	GGNCC	2 cut(s)	505, 613
SchI	GAGTC	1 cut(s)	308
ScrFI	CCNGG	3 cut(s)	509, 549, 574
SduI	GDGCHC	1 cut(s)	379
SetI	ASST	4 cut(s)	216, 258, 615, 706
SfaNI	GCATC	2 cut(s)	628, 736
SinI	GGWCC	2 cut(s)	505, 613
SmlI	CTYRAG	1 cut(s)	196
SmoI	CTYRAG	1 cut(s)	196
Sse9I	AATT	9 cut(s)	46, 75, 185, 441, 450, 666, 679, 695, 722
SspI	AATATT	1 cut(s)	25
SspMI	CTAG	2 cut(s)	486, 710
StyD4I	CCNGG	3 cut(s)	507, 547, 572
TaaI	ACNGT	3 cut(s)	89, 459, 628
TaiI	ACGT	1 cut(s)	706
TaqI	TCGA	2 cut(s)	379, 433
TasI	AATT	9 cut(s)	46, 75, 185, 441, 450, 666, 679, 695, 722
TfiI	GAWTC	2 cut(s)	140, 287
Tru1I	TTAA	4 cut(s)	27, 270, 621, 732
Tru9I	TTAA	4 cut(s)	27, 270, 621, 732
TscAI	CASTG	1 cut(s)	756
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	1 cut(s)	211
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	6 cut(s)	84, 197, 372, 554, 617, 662
TspRI	CASTG	1 cut(s)	756
VpaK11BI	GGWCC	2 cut(s)	505, 613
XapI	RAATTY	3 cut(s)	185, 695, 722
XcmI	CCANNNNNNNNNTGG	2 cut(s)	173, 580
XspI	CTAG	2 cut(s)	486, 710

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.